RNA–Protein interactions for RNA: ENST00000553609.5

NEDD1-205, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 3

Gene NEDD1, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-205ENST00000553609 NISCHQ9Y2I1 1504 aa36.28■■■■□ 3.4
NEDD1-205ENST00000553609 ABCC9O60706 1549 aa32.91■■■□□ 2.86
NEDD1-205ENST00000553609 CCDC180Q9P1Z9 1646 aa32.66■■■□□ 2.82
NEDD1-205ENST00000553609 RB1CC1Q8TDY2 1594 aa31.18■■■□□ 2.58
NEDD1-205ENST00000553609 DNAJC5BQ9UF47 199 aa31.16■■■□□ 2.58
NEDD1-205ENST00000553609 NACADO15069 1562 aa30.93■■■□□ 2.54
NEDD1-205ENST00000553609 DCAF8L2P0C7V8 631 aa30.56■■■□□ 2.48
NEDD1-205ENST00000553609 PABPN1Q86U42 306 aaKnown RBP eCLIP30.56■■■□□ 2.48
NEDD1-205ENST00000553609 UNC13AQ9UPW8 1703 aa30.5■■■□□ 2.47
NEDD1-205ENST00000553609 MYO15BQ96JP2 1530 aa30.47■■■□□ 2.47
NEDD1-205ENST00000553609 BICRAQ9NZM4 1560 aa30.38■■■□□ 2.45
NEDD1-205ENST00000553609 ZCCHC6Q5VYS8 1495 aaKnown RBP30.04■■■□□ 2.4
NEDD1-205ENST00000553609 DCAF1Q9Y4B6 1507 aa29.97■■■□□ 2.39
NEDD1-205ENST00000553609 SHROOM4Q9ULL8 1493 aa29.91■■■□□ 2.38
NEDD1-205ENST00000553609 CC2D2AQ9P2K1 1620 aa29.72■■■□□ 2.35
NEDD1-205ENST00000553609 SCRIBQ14160 1630 aa29.71■■■□□ 2.35
NEDD1-205ENST00000553609 CECR2Q9BXF3 1484 aa29.68■■■□□ 2.34
NEDD1-205ENST00000553609 EIF4G1Q04637 1599 aaKnown RBP29.61■■■□□ 2.33
NEDD1-205ENST00000553609 DNAJC5Q9H3Z4 198 aa28.75■■■□□ 2.19
NEDD1-205ENST00000553609 NCAPD3P42695 1498 aa28.59■■■□□ 2.17
NEDD1-205ENST00000553609 CUX2O14529 1486 aa28.47■■■□□ 2.15
NEDD1-205ENST00000553609 ATAD2BQ9ULI0 1458 aa28.46■■■□□ 2.15
NEDD1-205ENST00000553609 ERCC6Q03468 1493 aa28.37■■■□□ 2.13
NEDD1-205ENST00000553609 HMGXB3Q12766 1538 aa28.35■■■□□ 2.13
NEDD1-205ENST00000553609 SMARCA4P51532 1647 aa28.35■■■□□ 2.13
NEDD1-205ENST00000553609 SMARCA2P51531 1590 aa28.33■■■□□ 2.12
NEDD1-205ENST00000553609 NESP48681 1621 aa28.21■■■□□ 2.11
NEDD1-205ENST00000553609 BAZ1AQ9NRL2 1556 aaPredicted RBP28.16■■■□□ 2.1
NEDD1-205ENST00000553609 BAZ1BQ9UIG0 1483 aaKnown RBP28.13■■■□□ 2.09
NEDD1-205ENST00000553609 PEG3Q9GZU2 1588 aa28.11■■■□□ 2.09
NEDD1-205ENST00000553609 THOC2Q8NI27 1593 aaKnown RBP28.01■■■□□ 2.07
NEDD1-205ENST00000553609 MROH2BQ7Z745 1585 aa27.97■■■□□ 2.07
NEDD1-205ENST00000553609 LAMC3Q9Y6N6 1575 aa27.95■■■□□ 2.07
NEDD1-205ENST00000553609 KIF21AQ7Z4S6 1674 aa27.81■■■□□ 2.04
NEDD1-205ENST00000553609 PDS5BQ9NTI5 1447 aa27.77■■■□□ 2.04
NEDD1-205ENST00000553609 CADPSQ9ULU8 1353 aa27.68■■■□□ 2.02
NEDD1-205ENST00000553609 MRC2Q9UBG0 1479 aa27.58■■■□□ 2.01
NEDD1-205ENST00000553609 WIZO95785 1651 aa27.58■■■□□ 2.01
NEDD1-205ENST00000553609 WDR62O43379 1518 aa27.56■■■□□ 2
NEDD1-205ENST00000553609 CEP164Q9UPV0 1460 aa27.4■■□□□ 1.98
NEDD1-205ENST00000553609 FANCD2Q9BXW9 1451 aa27.36■■□□□ 1.97
NEDD1-205ENST00000553609 CFTRP13569 1480 aa27.34■■□□□ 1.97
NEDD1-205ENST00000553609 TRIM41Q8WV44 630 aa27.3■■□□□ 1.96
NEDD1-205ENST00000553609 RSF1Q96T23 1441 aaPredicted RBP27.28■■□□□ 1.96
NEDD1-205ENST00000553609 AEBP2Q6ZN18 517 aaPredicted RBP27.27■■□□□ 1.96
NEDD1-205ENST00000553609 TOP2AP11388 1531 aaKnown RBP27.23■■□□□ 1.95
NEDD1-205ENST00000553609 URB2Q14146 1524 aaKnown RBP27.19■■□□□ 1.94
NEDD1-205ENST00000553609 OSCARQ8IYS5 282 aa27.06■■□□□ 1.92
NEDD1-205ENST00000553609 PRDM2Q13029 1718 aa26.97■■□□□ 1.91
NEDD1-205ENST00000553609 CCDC88BA6NC98 1476 aa26.92■■□□□ 1.9
NEDD1-205ENST00000553609 ZNF608Q9ULD9 1512 aaPredicted RBP26.9■■□□□ 1.9
NEDD1-205ENST00000553609 IFT140Q96RY7 1462 aa26.87■■□□□ 1.89
NEDD1-205ENST00000553609 TOPBP1Q92547 1522 aa26.83■■□□□ 1.89
NEDD1-205ENST00000553609 RIMBP3CA6NJZ7 1639 aa26.8■■□□□ 1.88
NEDD1-205ENST00000553609 RIMBP3BA6NNM3 1639 aa26.8■■□□□ 1.88
NEDD1-205ENST00000553609 RIMBP3Q9UFD9 1639 aa26.8■■□□□ 1.88
NEDD1-205ENST00000553609 EIF4G3O43432 1585 aaKnown RBP26.71■■□□□ 1.87
NEDD1-205ENST00000553609 ARHGEF11O15085 1522 aa26.71■■□□□ 1.87
NEDD1-205ENST00000553609 ABCC8Q09428 1581 aa26.7■■□□□ 1.86
NEDD1-205ENST00000553609 DNMBPQ6XZF7 1577 aa26.7■■□□□ 1.86
NEDD1-205ENST00000553609 TARBP1Q13395 1621 aaKnown RBP26.64■■□□□ 1.85
NEDD1-205ENST00000553609 AQRO60306 1485 aaKnown RBP eCLIP26.59■■□□□ 1.85
NEDD1-205ENST00000553609 POLA1P09884 1462 aaPredicted RBP26.55■■□□□ 1.84
NEDD1-205ENST00000553609 CHD1O14646 1710 aa26.53■■□□□ 1.84
NEDD1-205ENST00000553609 ARAP1Q96P48 1450 aa26.45■■□□□ 1.82
NEDD1-205ENST00000553609 CYB5RLQ6IPT4 315 aa26.45■■□□□ 1.82
NEDD1-205ENST00000553609 RAD54L2Q9Y4B4 1467 aa26.44■■□□□ 1.82
NEDD1-205ENST00000553609 TDRD9Q8NDG6 1382 aaKnown RBP26.37■■□□□ 1.81
NEDD1-205ENST00000553609 SOGA1O94964 1423 aa26.37■■□□□ 1.81
NEDD1-205ENST00000553609 FBLN2P98095 1184 aa26.36■■□□□ 1.81
NEDD1-205ENST00000553609 FGD5Q6ZNL6 1462 aa26.33■■□□□ 1.81
NEDD1-205ENST00000553609 SNAPC4Q5SXM2 1469 aa26.31■■□□□ 1.8
NEDD1-205ENST00000553609 WDR97A6NE52 1622 aa26.31■■□□□ 1.8
NEDD1-205ENST00000553609 CLASP1Q7Z460 1538 aa26.29■■□□□ 1.8
NEDD1-205ENST00000553609 CUX1P39880 1505 aa26.29■■□□□ 1.8
NEDD1-205ENST00000553609 MAGI1Q96QZ7 1491 aaPredicted RBP26.23■■□□□ 1.79
NEDD1-205ENST00000553609 GRIN2BQ13224 1484 aa26.19■■□□□ 1.78
NEDD1-205ENST00000553609 TRHP20396 242 aaPredicted RBP26.18■■□□□ 1.78
NEDD1-205ENST00000553609 SYNJ1O43426 1573 aa26.16■■□□□ 1.78
NEDD1-205ENST00000553609 SYNJ2O15056 1496 aa26.15■■□□□ 1.78
NEDD1-205ENST00000553609 CHMP7Q8WUX9 453 aaPredicted RBP26.14■■□□□ 1.78
NEDD1-205ENST00000553609 GAPVD1Q14C86 1478 aa26.06■■□□□ 1.76
NEDD1-205ENST00000553609 PBRM1Q86U86 1689 aa26.05■■□□□ 1.76
NEDD1-205ENST00000553609 ABCA10Q8WWZ4 1543 aa26.03■■□□□ 1.76
NEDD1-205ENST00000553609 ABCA5Q8WWZ7 1642 aa26.03■■□□□ 1.76
NEDD1-205ENST00000553609 CHIC1Q5VXU3 224 aa25.91■■□□□ 1.74
NEDD1-205ENST00000553609 GRIN2AQ12879 1464 aa25.87■■□□□ 1.73
NEDD1-205ENST00000553609 ERCC6L2Q5T890 1561 aa25.86■■□□□ 1.73
NEDD1-205ENST00000553609 ADAMTS12P58397 1594 aa25.84■■□□□ 1.73
NEDD1-205ENST00000553609 NUP160Q12769 1436 aa25.83■■□□□ 1.73
NEDD1-205ENST00000553609 WRNQ14191 1432 aaPredicted RBP eCLIP25.82■■□□□ 1.72
NEDD1-205ENST00000553609 CEP170Q5SW79 1584 aa25.81■■□□□ 1.72
NEDD1-205ENST00000553609 BIVM-ERCC5R4GMW8 1640 aa25.77■■□□□ 1.72
NEDD1-205ENST00000553609 TOP2BQ02880 1626 aa25.77■■□□□ 1.72
NEDD1-205ENST00000553609 SUPT5HO00267 1087 aaKnown RBP25.74■■□□□ 1.71
NEDD1-205ENST00000553609 SHROOM2Q13796 1616 aa25.74■■□□□ 1.71
NEDD1-205ENST00000553609 FHAD1B1AJZ9 1412 aa25.72■■□□□ 1.71
NEDD1-205ENST00000553609 ERICH3Q5RHP9 1530 aa25.68■■□□□ 1.7
NEDD1-205ENST00000553609 PRG4Q92954 1404 aaPredicted RBP25.54■■□□□ 1.68
NEDD1-205ENST00000553609 KIF13AQ9H1H9 1805 aa25.49■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms