RNA–Protein interactions for RNA: ENST00000554226.5

NEDD1-206, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 2

Gene NEDD1, Length 582 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-206ENST00000554226 NISCHQ9Y2I1 1504 aa35.65■■■■□ 3.3
NEDD1-206ENST00000554226 ABCC9O60706 1549 aa32.55■■■□□ 2.8
NEDD1-206ENST00000554226 CCDC180Q9P1Z9 1646 aa32.28■■■□□ 2.76
NEDD1-206ENST00000554226 DNAJC5BQ9UF47 199 aa31.05■■■□□ 2.56
NEDD1-206ENST00000554226 RB1CC1Q8TDY2 1594 aa30.85■■■□□ 2.53
NEDD1-206ENST00000554226 NACADO15069 1562 aa30.57■■■□□ 2.48
NEDD1-206ENST00000554226 PABPN1Q86U42 306 aaKnown RBP eCLIP30.19■■■□□ 2.42
NEDD1-206ENST00000554226 UNC13AQ9UPW8 1703 aa30.18■■■□□ 2.42
NEDD1-206ENST00000554226 MYO15BQ96JP2 1530 aa30.11■■■□□ 2.41
NEDD1-206ENST00000554226 DCAF8L2P0C7V8 631 aa30.01■■■□□ 2.39
NEDD1-206ENST00000554226 BICRAQ9NZM4 1560 aa29.98■■■□□ 2.39
NEDD1-206ENST00000554226 SHROOM4Q9ULL8 1493 aa29.66■■■□□ 2.34
NEDD1-206ENST00000554226 DCAF1Q9Y4B6 1507 aa29.54■■■□□ 2.32
NEDD1-206ENST00000554226 ZCCHC6Q5VYS8 1495 aaKnown RBP29.48■■■□□ 2.31
NEDD1-206ENST00000554226 CECR2Q9BXF3 1484 aa29.4■■■□□ 2.3
NEDD1-206ENST00000554226 CC2D2AQ9P2K1 1620 aa29.39■■■□□ 2.3
NEDD1-206ENST00000554226 EIF4G1Q04637 1599 aaKnown RBP29.25■■■□□ 2.27
NEDD1-206ENST00000554226 SCRIBQ14160 1630 aa29.2■■■□□ 2.26
NEDD1-206ENST00000554226 DNAJC5Q9H3Z4 198 aa28.92■■■□□ 2.22
NEDD1-206ENST00000554226 CUX2O14529 1486 aa28.34■■■□□ 2.13
NEDD1-206ENST00000554226 NCAPD3P42695 1498 aa28.21■■■□□ 2.11
NEDD1-206ENST00000554226 ERCC6Q03468 1493 aa28.14■■■□□ 2.09
NEDD1-206ENST00000554226 ATAD2BQ9ULI0 1458 aa28.02■■■□□ 2.08
NEDD1-206ENST00000554226 HMGXB3Q12766 1538 aa27.99■■■□□ 2.07
NEDD1-206ENST00000554226 SMARCA2P51531 1590 aa27.95■■■□□ 2.07
NEDD1-206ENST00000554226 SMARCA4P51532 1647 aa27.91■■■□□ 2.06
NEDD1-206ENST00000554226 NESP48681 1621 aa27.81■■■□□ 2.04
NEDD1-206ENST00000554226 PEG3Q9GZU2 1588 aa27.73■■■□□ 2.03
NEDD1-206ENST00000554226 BAZ1AQ9NRL2 1556 aaPredicted RBP27.72■■■□□ 2.03
NEDD1-206ENST00000554226 THOC2Q8NI27 1593 aaKnown RBP27.7■■■□□ 2.03
NEDD1-206ENST00000554226 BAZ1BQ9UIG0 1483 aaKnown RBP27.69■■■□□ 2.02
NEDD1-206ENST00000554226 LAMC3Q9Y6N6 1575 aa27.65■■■□□ 2.02
NEDD1-206ENST00000554226 KIF21AQ7Z4S6 1674 aa27.49■■□□□ 1.99
NEDD1-206ENST00000554226 PDS5BQ9NTI5 1447 aa27.43■■□□□ 1.98
NEDD1-206ENST00000554226 MROH2BQ7Z745 1585 aa27.41■■□□□ 1.98
NEDD1-206ENST00000554226 TRIM41Q8WV44 630 aa27.36■■□□□ 1.97
NEDD1-206ENST00000554226 CADPSQ9ULU8 1353 aa27.26■■□□□ 1.95
NEDD1-206ENST00000554226 WDR62O43379 1518 aa27.24■■□□□ 1.95
NEDD1-206ENST00000554226 MRC2Q9UBG0 1479 aa27.23■■□□□ 1.95
NEDD1-206ENST00000554226 WIZO95785 1651 aa27.06■■□□□ 1.92
NEDD1-206ENST00000554226 CEP164Q9UPV0 1460 aa27.02■■□□□ 1.92
NEDD1-206ENST00000554226 FANCD2Q9BXW9 1451 aa26.95■■□□□ 1.91
NEDD1-206ENST00000554226 CFTRP13569 1480 aa26.92■■□□□ 1.9
NEDD1-206ENST00000554226 OSCARQ8IYS5 282 aa26.88■■□□□ 1.89
NEDD1-206ENST00000554226 URB2Q14146 1524 aaKnown RBP26.77■■□□□ 1.88
NEDD1-206ENST00000554226 TOP2AP11388 1531 aaKnown RBP26.75■■□□□ 1.87
NEDD1-206ENST00000554226 RSF1Q96T23 1441 aaPredicted RBP26.7■■□□□ 1.86
NEDD1-206ENST00000554226 PRDM2Q13029 1718 aa26.69■■□□□ 1.86
NEDD1-206ENST00000554226 RIMBP3CA6NJZ7 1639 aa26.63■■□□□ 1.85
NEDD1-206ENST00000554226 RIMBP3BA6NNM3 1639 aa26.63■■□□□ 1.85
NEDD1-206ENST00000554226 RIMBP3Q9UFD9 1639 aa26.63■■□□□ 1.85
NEDD1-206ENST00000554226 IFT140Q96RY7 1462 aa26.52■■□□□ 1.84
NEDD1-206ENST00000554226 ARHGEF11O15085 1522 aa26.5■■□□□ 1.83
NEDD1-206ENST00000554226 ZNF608Q9ULD9 1512 aaPredicted RBP26.47■■□□□ 1.83
NEDD1-206ENST00000554226 TOPBP1Q92547 1522 aa26.41■■□□□ 1.82
NEDD1-206ENST00000554226 ABCC8Q09428 1581 aa26.38■■□□□ 1.81
NEDD1-206ENST00000554226 CCDC88BA6NC98 1476 aa26.38■■□□□ 1.81
NEDD1-206ENST00000554226 EIF4G3O43432 1585 aaKnown RBP26.37■■□□□ 1.81
NEDD1-206ENST00000554226 DNMBPQ6XZF7 1577 aa26.3■■□□□ 1.8
NEDD1-206ENST00000554226 CYB5RLQ6IPT4 315 aa26.27■■□□□ 1.8
NEDD1-206ENST00000554226 TARBP1Q13395 1621 aaKnown RBP26.26■■□□□ 1.79
NEDD1-206ENST00000554226 CHD1O14646 1710 aa26.24■■□□□ 1.79
NEDD1-206ENST00000554226 ARAP1Q96P48 1450 aa26.21■■□□□ 1.79
NEDD1-206ENST00000554226 AQRO60306 1485 aaKnown RBP eCLIP26.15■■□□□ 1.78
NEDD1-206ENST00000554226 TRHP20396 242 aaPredicted RBP26.14■■□□□ 1.78
NEDD1-206ENST00000554226 POLA1P09884 1462 aaPredicted RBP26.11■■□□□ 1.77
NEDD1-206ENST00000554226 WDR97A6NE52 1622 aa26.05■■□□□ 1.76
NEDD1-206ENST00000554226 FBLN2P98095 1184 aa26.02■■□□□ 1.76
NEDD1-206ENST00000554226 CLASP1Q7Z460 1538 aa25.98■■□□□ 1.75
NEDD1-206ENST00000554226 RAD54L2Q9Y4B4 1467 aa25.95■■□□□ 1.74
NEDD1-206ENST00000554226 SOGA1O94964 1423 aa25.93■■□□□ 1.74
NEDD1-206ENST00000554226 TDRD9Q8NDG6 1382 aaKnown RBP25.9■■□□□ 1.74
NEDD1-206ENST00000554226 SNAPC4Q5SXM2 1469 aa25.9■■□□□ 1.74
NEDD1-206ENST00000554226 MAGI1Q96QZ7 1491 aaPredicted RBP25.89■■□□□ 1.73
NEDD1-206ENST00000554226 SYNJ1O43426 1573 aa25.88■■□□□ 1.73
NEDD1-206ENST00000554226 FGD5Q6ZNL6 1462 aa25.86■■□□□ 1.73
NEDD1-206ENST00000554226 GRIN2BQ13224 1484 aa25.8■■□□□ 1.72
NEDD1-206ENST00000554226 CUX1P39880 1505 aa25.79■■□□□ 1.72
NEDD1-206ENST00000554226 AEBP2Q6ZN18 517 aaPredicted RBP25.79■■□□□ 1.72
NEDD1-206ENST00000554226 SYNJ2O15056 1496 aa25.79■■□□□ 1.72
NEDD1-206ENST00000554226 CHMP7Q8WUX9 453 aaPredicted RBP25.77■■□□□ 1.72
NEDD1-206ENST00000554226 PBRM1Q86U86 1689 aa25.71■■□□□ 1.71
NEDD1-206ENST00000554226 GAPVD1Q14C86 1478 aa25.66■■□□□ 1.7
NEDD1-206ENST00000554226 ABCA5Q8WWZ7 1642 aa25.63■■□□□ 1.69
NEDD1-206ENST00000554226 ABCA10Q8WWZ4 1543 aa25.61■■□□□ 1.69
NEDD1-206ENST00000554226 GRIN2AQ12879 1464 aa25.48■■□□□ 1.67
NEDD1-206ENST00000554226 ERCC6L2Q5T890 1561 aa25.45■■□□□ 1.66
NEDD1-206ENST00000554226 NUP160Q12769 1436 aa25.45■■□□□ 1.66
NEDD1-206ENST00000554226 ADAMTS12P58397 1594 aa25.44■■□□□ 1.66
NEDD1-206ENST00000554226 SHROOM2Q13796 1616 aa25.44■■□□□ 1.66
NEDD1-206ENST00000554226 CEP170Q5SW79 1584 aa25.42■■□□□ 1.66
NEDD1-206ENST00000554226 WRNQ14191 1432 aaPredicted RBP eCLIP25.37■■□□□ 1.65
NEDD1-206ENST00000554226 BIVM-ERCC5R4GMW8 1640 aa25.34■■□□□ 1.65
NEDD1-206ENST00000554226 TOP2BQ02880 1626 aa25.32■■□□□ 1.64
NEDD1-206ENST00000554226 FHAD1B1AJZ9 1412 aa25.31■■□□□ 1.64
NEDD1-206ENST00000554226 ERICH3Q5RHP9 1530 aa25.29■■□□□ 1.64
NEDD1-206ENST00000554226 KIF13AQ9H1H9 1805 aa25.29■■□□□ 1.64
NEDD1-206ENST00000554226 PRG4Q92954 1404 aaPredicted RBP25.14■■□□□ 1.62
NEDD1-206ENST00000554226 RUSC2Q8N2Y8 1516 aa25.11■■□□□ 1.61
NEDD1-206ENST00000554226 MAPKBP1O60336 1514 aa25.09■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms