Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 RACK1-225ENST00000511566 825 ntTSL 3 BASIC10.84□□□□□ -0.672e-6■■■■■ 109
SF3B1O75533 RACK1-219ENST00000508682 1208 ntTSL 510.64□□□□□ -0.712e-6■■■■■ 109
SF3B1O75533 NTPCR-202ENST00000366628 6311 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.712e-6■■■■■ 109
SF3B1O75533 RACK1-233ENST00000514455 791 ntTSL 2 BASIC10.63□□□□□ -0.712e-6■■■■■ 109
SF3B1O75533 RACK1-205ENST00000502905 643 ntTSL 310.38□□□□□ -0.752e-6■■■■■ 109
SF3B1O75533 STX12-201ENST00000373943 3079 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.762e-6■■■■■ 109
SF3B1O75533 STX12-203ENST00000468761 703 ntTSL 210.28□□□□□ -0.762e-6■■■■■ 109
SF3B1O75533 RACK1-210ENST00000504325 1098 ntTSL 1 (best)10.12□□□□□ -0.792e-6■■■■■ 109
SF3B1O75533 SZT2-205ENST00000470139 4098 ntTSL 29.6□□□□□ -0.872e-6■■■■■ 109
SF3B1O75533 RACK1-211ENST00000504726 388 ntTSL 5 BASIC9.55□□□□□ -0.882e-6■■■■■ 109
SF3B1O75533 RACK1-222ENST00000509535 456 ntTSL 39.52□□□□□ -0.892e-6■■■■■ 109
SF3B1O75533 RACK1-217ENST00000507756 889 ntTSL 59.52□□□□□ -0.892e-6■■■■■ 109
SF3B1O75533 RACK1-201ENST00000376817 965 ntTSL 5 BASIC9.14□□□□□ -0.952e-6■■■■■ 109
SF3B1O75533 RACK1-209ENST00000504128 990 ntTSL 29.14□□□□□ -0.952e-6■■■■■ 109
SF3B1O75533 PHLPP2-206ENST00000568954 8317 ntAPPRIS P2 TSL 1 (best) BASIC8.8□□□□□ -12e-6■■■■■ 109
SF3B1O75533 PHLPP2-202ENST00000538126 3485 ntTSL 26.21□□□□□ -1.422e-6■■■■■ 109
SF3B1O75533 MINDY3-203ENST00000418767 967 ntTSL 32.83□□□□□ -1.963e-8■■■■■ 109
SF3B1O75533 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.274e-6■■■■■ 109
SF3B1O75533 CEP152-202ENST00000380950 5635 ntAPPRIS ALT2 TSL 1 (best) BASIC9.5□□□□□ -0.893e-7■■■■■ 109
SF3B1O75533 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.653e-7■■■■■ 109
SF3B1O75533 GUSBP11-206ENST00000455485 3816 ntTSL 2 BASIC14.18□□□□□ -0.145e-7■■■■■ 108.9
SF3B1O75533 ITPR1-204ENST00000443694 9513 ntAPPRIS ALT1 TSL 1 (best) BASIC8.22□□□□□ -1.093e-6■■■■■ 108.9
SF3B1O75533 MYO18B-202ENST00000407587 8090 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.363e-6■■■■■ 108.9
SF3B1O75533 MYO18B-201ENST00000335473 8565 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.463e-6■■■■■ 108.9
SF3B1O75533 MYO18B-205ENST00000536101 8051 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.593e-6■■■■■ 108.9
SF3B1O75533 SUPT3H-205ENST00000475057 1377 ntTSL 27.57□□□□□ -1.23e-6■■■■■ 108.9
SF3B1O75533 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.37□□□□□ -1.553e-6■■■■■ 108.9
SF3B1O75533 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.643e-6■■■■■ 108.9
SF3B1O75533 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC22.2■■□□□ 1.142e-6■■■■■ 108.9
SF3B1O75533 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.282e-6■■■■■ 108.9
SF3B1O75533 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC5.25□□□□□ -1.572e-6■■■■■ 108.9
SF3B1O75533 CDC14A-204ENST00000455467 841 ntTSL 33.75□□□□□ -1.812e-6■■■■■ 108.9
SF3B1O75533 SPRED2-207ENST00000452315 1365 ntTSL 1 (best)18.25■□□□□ 0.512e-6■■■■■ 108.8
SF3B1O75533 CBFA2T3-209ENST00000569443 469 ntTSL 513.87□□□□□ -0.192e-6■■■■■ 108.8
SF3B1O75533 GATAD2A-213ENST00000609040 1652 ntTSL 219.9■□□□□ 0.784e-6■■■■■ 108.8
SF3B1O75533 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.374e-6■■■■■ 108.8
SF3B1O75533 IKBKB-228ENST00000523517 2378 ntTSL 1 (best)18.34■□□□□ 0.534e-6■■■■■ 108.7
SF3B1O75533 IKBKB-206ENST00000517890 2501 ntTSL 217.01■□□□□ 0.314e-6■■■■■ 108.7
SF3B1O75533 IKBKB-209ENST00000518679 2784 ntTSL 215□□□□□ -0.014e-6■■■■■ 108.7
SF3B1O75533 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.034e-6■■■■■ 108.7
SF3B1O75533 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC14.27□□□□□ -0.124e-6■■■■■ 108.7
SF3B1O75533 IKBKB-218ENST00000520835 2403 ntTSL 2 BASIC13.73□□□□□ -0.214e-6■■■■■ 108.7
SF3B1O75533 IKBKB-227ENST00000523105 1966 ntTSL 213.28□□□□□ -0.284e-6■■■■■ 108.7
SF3B1O75533 IKBKB-214ENST00000520201 5002 ntTSL 212.59□□□□□ -0.394e-6■■■■■ 108.7
SF3B1O75533 IKBKB-201ENST00000342222 3952 ntTSL 212.28□□□□□ -0.444e-6■■■■■ 108.7
SF3B1O75533 IKBKB-230ENST00000629753 4069 ntTSL 2 BASIC12.24□□□□□ -0.454e-6■■■■■ 108.7
SF3B1O75533 IKBKB-220ENST00000521661 2196 ntTSL 512.15□□□□□ -0.464e-6■■■■■ 108.7
SF3B1O75533 IKBKB-216ENST00000520655 3777 ntTSL 211.89□□□□□ -0.514e-6■■■■■ 108.7
SF3B1O75533 IKBKB-202ENST00000416505 4036 ntTSL 2 BASIC10.52□□□□□ -0.724e-6■■■■■ 108.7
SF3B1O75533 FAM13A-203ENST00000502459 1993 ntTSL 218.05■□□□□ 0.482e-6■■■■■ 108.7
SF3B1O75533 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.99■□□□□ 0.311e-6■■■■■ 108.7
SF3B1O75533 PSMF1-209ENST00000479715 660 ntTSL 314.4□□□□□ -0.11e-6■■■■■ 108.7
SF3B1O75533 PSMF1-203ENST00000335877 4290 ntAPPRIS P3 TSL 1 (best) BASIC10.12□□□□□ -0.791e-6■■■■■ 108.7
SF3B1O75533 PSMF1-202ENST00000333082 3686 ntAPPRIS P3 TSL 1 (best) BASIC9.78□□□□□ -0.841e-6■■■■■ 108.7
SF3B1O75533 AC104041.1-201ENST00000560054 569 ntTSL 5 BASIC10.68□□□□□ -0.74e-6■■■■■ 108.6
SF3B1O75533 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.011e-6■■■■■ 108.6
SF3B1O75533 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.682e-6■■■■■ 108.6
SF3B1O75533 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.15■□□□□ 0.51e-6■■■■■ 108.6
SF3B1O75533 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.491e-6■■■■■ 108.6
SF3B1O75533 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.431e-6■■■■■ 108.6
SF3B1O75533 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.45■□□□□ 0.381e-6■■■■■ 108.6
SF3B1O75533 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.271e-6■■■■■ 108.6
SF3B1O75533 SLC38A10-204ENST00000539748 528 ntTSL 315.65■□□□□ 0.12e-6■■■■■ 108.6
SF3B1O75533 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.032e-6■■■■■ 108.6
SF3B1O75533 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC15.13■□□□□ 0.011e-6■■■■■ 108.6
SF3B1O75533 TNIP1-201ENST00000315050 2785 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.331e-6■■■■■ 108.6
SF3B1O75533 TNIP1-218ENST00000523338 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.371e-6■■■■■ 108.6
SF3B1O75533 AGAP1-214ENST00000635100 2478 ntTSL 515.7■□□□□ 0.11e-6■■■■■ 108.6
SF3B1O75533 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.254e-6■■■■■ 108.6
SF3B1O75533 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC23.54■■□□□ 1.362e-6■■■■■ 108.6
SF3B1O75533 TPM3-220ENST00000509601 543 ntTSL 419.67■□□□□ 0.747e-7■■■■■ 108.6
SF3B1O75533 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.532e-6■■■■■ 108.6
SF3B1O75533 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.25■□□□□ 0.352e-6■■■■■ 108.6
SF3B1O75533 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.332e-6■■■■■ 108.6
SF3B1O75533 TPM3-219ENST00000509409 1248 ntTSL 216.96■□□□□ 0.37e-7■■■■■ 108.6
SF3B1O75533 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC15.45■□□□□ 0.067e-7■■■■■ 108.6
SF3B1O75533 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC15.4■□□□□ 0.067e-7■■■■■ 108.6
SF3B1O75533 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC15.02■□□□□ -07e-7■■■■■ 108.6
SF3B1O75533 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC14.96□□□□□ -0.017e-7■■■■■ 108.6
SF3B1O75533 TPM3-216ENST00000473036 746 ntTSL 214.2□□□□□ -0.147e-7■■■■■ 108.6
SF3B1O75533 TRAP1-201ENST00000246957 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.182e-6■■■■■ 108.6
SF3B1O75533 TPM3-204ENST00000323144 1088 ntTSL 2 BASIC13.63□□□□□ -0.237e-7■■■■■ 108.6
SF3B1O75533 TPM3-223ENST00000611659 3149 ntTSL 3 BASIC12.34□□□□□ -0.437e-7■■■■■ 108.6
SF3B1O75533 TPM3-207ENST00000341372 2007 ntTSL 5 BASIC11.11□□□□□ -0.637e-7■■■■■ 108.6
SF3B1O75533 TPM3-212ENST00000368533 3131 ntTSL 1 (best) BASIC10.91□□□□□ -0.667e-7■■■■■ 108.6
SF3B1O75533 TPM3-210ENST00000368530 1523 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.697e-7■■■■■ 108.6
SF3B1O75533 TPM3-209ENST00000368527 569 ntTSL 410.64□□□□□ -0.717e-7■■■■■ 108.6
SF3B1O75533 TPM3-201ENST00000271850 1219 ntAPPRIS ALT1 TSL 5 BASIC9.88□□□□□ -0.837e-7■■■■■ 108.6
SF3B1O75533 TPM3-203ENST00000312970 750 ntTSL 58.97□□□□□ -0.977e-7■■■■■ 108.6
SF3B1O75533 TPM3-215ENST00000469717 4041 ntTSL 28.25□□□□□ -1.097e-7■■■■■ 108.6
SF3B1O75533 LINC01608-202ENST00000524283 561 ntTSL 4 BASIC8.17□□□□□ -1.14e-6■■■■■ 108.6
SF3B1O75533 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.384e-6■■■■■ 108.6
SF3B1O75533 FNTB-203ENST00000554334 2622 ntTSL 215.98■□□□□ 0.158e-7■■■■■ 108.6
SF3B1O75533 PPME1-207ENST00000542710 590 ntTSL 314.66□□□□□ -0.061e-11■■■■■ 108.6
SF3B1O75533 FNTB-207ENST00000556709 509 ntTSL 514.55□□□□□ -0.088e-7■■■■■ 108.6
SF3B1O75533 FNTB-201ENST00000246166 2834 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.178e-7■■■■■ 108.6
SF3B1O75533 PPME1-209ENST00000544401 488 ntTSL 411.43□□□□□ -0.581e-11■■■■■ 108.6
SF3B1O75533 FANCA-225ENST00000567621 618 ntTSL 310.81□□□□□ -0.681e-7■■■■■ 108.6
SF3B1O75533 FNTB-202ENST00000554210 575 ntTSL 49.74□□□□□ -0.858e-7■■■■■ 108.6
SF3B1O75533 R3HCC1L-203ENST00000370584 3372 ntAPPRIS P1 TSL 2 BASIC8.66□□□□□ -1.022e-6■■■■■ 108.6
Retrieved 100 of 46,956 protein–RNA pairs in 1341.3 ms