RNA–Protein interactions for RNA: ENST00000312970.12

TPM3-203, Transcript of tropomyosin 3, humanhuman

TSL 5

Gene TPM3, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-203ENST00000312970 NISCHQ9Y2I1 1504 aa20.2■□□□□ 0.82
TPM3-203ENST00000312970 ABCC9O60706 1549 aa18.32■□□□□ 0.52
TPM3-203ENST00000312970 CCDC180Q9P1Z9 1646 aa18.2■□□□□ 0.5
TPM3-203ENST00000312970 DNAJC5BQ9UF47 199 aa17.69■□□□□ 0.42
TPM3-203ENST00000312970 RB1CC1Q8TDY2 1594 aa17.34■□□□□ 0.37
TPM3-203ENST00000312970 NACADO15069 1562 aa17.19■□□□□ 0.34
TPM3-203ENST00000312970 DCAF8L2P0C7V8 631 aa17.14■□□□□ 0.33
TPM3-203ENST00000312970 PABPN1Q86U42 306 aaKnown RBP eCLIP17.05■□□□□ 0.32
TPM3-203ENST00000312970 UNC13AQ9UPW8 1703 aa17.01■□□□□ 0.31
TPM3-203ENST00000312970 MYO15BQ96JP2 1530 aa16.91■□□□□ 0.3
TPM3-203ENST00000312970 BICRAQ9NZM4 1560 aa16.84■□□□□ 0.29
TPM3-203ENST00000312970 CHIC1Q5VXU3 224 aa16.81■□□□□ 0.28
TPM3-203ENST00000312970 ZCCHC6Q5VYS8 1495 aaKnown RBP16.72■□□□□ 0.27
TPM3-203ENST00000312970 DCAF1Q9Y4B6 1507 aa16.68■□□□□ 0.26
TPM3-203ENST00000312970 SHROOM4Q9ULL8 1493 aa16.61■□□□□ 0.25
TPM3-203ENST00000312970 SCRIBQ14160 1630 aa16.54■□□□□ 0.24
TPM3-203ENST00000312970 CECR2Q9BXF3 1484 aa16.53■□□□□ 0.24
TPM3-203ENST00000312970 CC2D2AQ9P2K1 1620 aa16.51■□□□□ 0.23
TPM3-203ENST00000312970 DNAJC5Q9H3Z4 198 aa16.48■□□□□ 0.23
TPM3-203ENST00000312970 EIF4G1Q04637 1599 aaKnown RBP16.43■□□□□ 0.22
TPM3-203ENST00000312970 AEBP2Q6ZN18 517 aaPredicted RBP16.35■□□□□ 0.21
TPM3-203ENST00000312970 CUX2O14529 1486 aa15.89■□□□□ 0.13
TPM3-203ENST00000312970 NCAPD3P42695 1498 aa15.84■□□□□ 0.13
TPM3-203ENST00000312970 ERCC6Q03468 1493 aa15.79■□□□□ 0.12
TPM3-203ENST00000312970 ATAD2BQ9ULI0 1458 aa15.78■□□□□ 0.12
TPM3-203ENST00000312970 SMARCA4P51532 1647 aa15.77■□□□□ 0.12
TPM3-203ENST00000312970 SMARCA2P51531 1590 aa15.75■□□□□ 0.11
TPM3-203ENST00000312970 HMGXB3Q12766 1538 aa15.75■□□□□ 0.11
TPM3-203ENST00000312970 BAZ1AQ9NRL2 1556 aaPredicted RBP15.67■□□□□ 0.1
TPM3-203ENST00000312970 NESP48681 1621 aa15.64■□□□□ 0.09
TPM3-203ENST00000312970 BAZ1BQ9UIG0 1483 aaKnown RBP15.64■□□□□ 0.09
TPM3-203ENST00000312970 PEG3Q9GZU2 1588 aa15.62■□□□□ 0.09
TPM3-203ENST00000312970 TRIM41Q8WV44 630 aa15.58■□□□□ 0.08
TPM3-203ENST00000312970 MROH2BQ7Z745 1585 aa15.56■□□□□ 0.08
TPM3-203ENST00000312970 THOC2Q8NI27 1593 aaKnown RBP15.54■□□□□ 0.08
TPM3-203ENST00000312970 LAMC3Q9Y6N6 1575 aa15.54■□□□□ 0.08
TPM3-203ENST00000312970 KIF21AQ7Z4S6 1674 aa15.49■□□□□ 0.07
TPM3-203ENST00000312970 PDS5BQ9NTI5 1447 aa15.42■□□□□ 0.06
TPM3-203ENST00000312970 WIZO95785 1651 aa15.36■□□□□ 0.05
TPM3-203ENST00000312970 CADPSQ9ULU8 1353 aa15.35■□□□□ 0.05
TPM3-203ENST00000312970 MRC2Q9UBG0 1479 aa15.3■□□□□ 0.04
TPM3-203ENST00000312970 WDR62O43379 1518 aa15.28■□□□□ 0.04
TPM3-203ENST00000312970 RSF1Q96T23 1441 aaPredicted RBP15.28■□□□□ 0.04
TPM3-203ENST00000312970 CEP164Q9UPV0 1460 aa15.23■□□□□ 0.03
TPM3-203ENST00000312970 FANCD2Q9BXW9 1451 aa15.19■□□□□ 0.02
TPM3-203ENST00000312970 OSCARQ8IYS5 282 aa15.18■□□□□ 0.02
TPM3-203ENST00000312970 TOP2AP11388 1531 aaKnown RBP15.17■□□□□ 0.02
TPM3-203ENST00000312970 CFTRP13569 1480 aa15.16■□□□□ 0.02
TPM3-203ENST00000312970 PRDM2Q13029 1718 aa15.11■□□□□ 0.01
TPM3-203ENST00000312970 URB2Q14146 1524 aaKnown RBP15.07■□□□□ 0
TPM3-203ENST00000312970 CCDC88BA6NC98 1476 aa15.04■□□□□ -0
TPM3-203ENST00000312970 RIMBP3CA6NJZ7 1639 aa15□□□□□ -0.01
TPM3-203ENST00000312970 RIMBP3BA6NNM3 1639 aa15□□□□□ -0.01
TPM3-203ENST00000312970 RIMBP3Q9UFD9 1639 aa15□□□□□ -0.01
TPM3-203ENST00000312970 IFT140Q96RY7 1462 aa14.92□□□□□ -0.02
TPM3-203ENST00000312970 TOPBP1Q92547 1522 aa14.9□□□□□ -0.02
TPM3-203ENST00000312970 ZNF608Q9ULD9 1512 aaPredicted RBP14.9□□□□□ -0.02
TPM3-203ENST00000312970 ARHGEF11O15085 1522 aa14.89□□□□□ -0.03
TPM3-203ENST00000312970 CYB5RLQ6IPT4 315 aa14.88□□□□□ -0.03
TPM3-203ENST00000312970 ABCC8Q09428 1581 aa14.87□□□□□ -0.03
TPM3-203ENST00000312970 PHF23Q9BUL5 403 aaPredicted RBP14.87□□□□□ -0.03
TPM3-203ENST00000312970 EIF4G3O43432 1585 aaKnown RBP14.85□□□□□ -0.03
TPM3-203ENST00000312970 DNMBPQ6XZF7 1577 aa14.85□□□□□ -0.03
TPM3-203ENST00000312970 TRHP20396 242 aaPredicted RBP14.83□□□□□ -0.04
TPM3-203ENST00000312970 TARBP1Q13395 1621 aaKnown RBP14.8□□□□□ -0.04
TPM3-203ENST00000312970 CHD1O14646 1710 aa14.79□□□□□ -0.04
TPM3-203ENST00000312970 AQRO60306 1485 aaKnown RBP eCLIP14.74□□□□□ -0.054e-7■■□□□ 12.7
TPM3-203ENST00000312970 POLA1P09884 1462 aaPredicted RBP14.73□□□□□ -0.05
TPM3-203ENST00000312970 ARAP1Q96P48 1450 aa14.72□□□□□ -0.05
TPM3-203ENST00000312970 SUPT5HO00267 1087 aaKnown RBP14.7□□□□□ -0.06
TPM3-203ENST00000312970 SOGA1O94964 1423 aa14.69□□□□□ -0.06
TPM3-203ENST00000312970 FBLN2P98095 1184 aa14.67□□□□□ -0.06
TPM3-203ENST00000312970 RAD54L2Q9Y4B4 1467 aa14.66□□□□□ -0.06
TPM3-203ENST00000312970 TDRD9Q8NDG6 1382 aaKnown RBP14.65□□□□□ -0.06
TPM3-203ENST00000312970 WDR97A6NE52 1622 aa14.65□□□□□ -0.06
TPM3-203ENST00000312970 FGD5Q6ZNL6 1462 aa14.63□□□□□ -0.07
TPM3-203ENST00000312970 SNAPC4Q5SXM2 1469 aa14.61□□□□□ -0.07
TPM3-203ENST00000312970 CUX1P39880 1505 aa14.61□□□□□ -0.07
TPM3-203ENST00000312970 CLASP1Q7Z460 1538 aa14.58□□□□□ -0.08
TPM3-203ENST00000312970 MAGI1Q96QZ7 1491 aaPredicted RBP14.57□□□□□ -0.08
TPM3-203ENST00000312970 CHMP7Q8WUX9 453 aaPredicted RBP14.57□□□□□ -0.08
TPM3-203ENST00000312970 SYNJ1O43426 1573 aa14.56□□□□□ -0.08
TPM3-203ENST00000312970 GRIN2BQ13224 1484 aa14.55□□□□□ -0.08
TPM3-203ENST00000312970 PBRM1Q86U86 1689 aa14.55□□□□□ -0.08
TPM3-203ENST00000312970 SYNJ2O15056 1496 aa14.51□□□□□ -0.09
TPM3-203ENST00000312970 GAPVD1Q14C86 1478 aa14.49□□□□□ -0.09
TPM3-203ENST00000312970 ABCA5Q8WWZ7 1642 aa14.48□□□□□ -0.09
TPM3-203ENST00000312970 ABCA10Q8WWZ4 1543 aa14.46□□□□□ -0.09
TPM3-203ENST00000312970 WRNQ14191 1432 aaPredicted RBP eCLIP14.44□□□□□ -0.19e-7■■■□□ 18.8
TPM3-203ENST00000312970 TOP2BQ02880 1626 aa14.38□□□□□ -0.11
TPM3-203ENST00000312970 BIVM-ERCC5R4GMW8 1640 aa14.37□□□□□ -0.11
TPM3-203ENST00000312970 ADAMTS12P58397 1594 aa14.37□□□□□ -0.11
TPM3-203ENST00000312970 GRIN2AQ12879 1464 aa14.37□□□□□ -0.11
TPM3-203ENST00000312970 CEP170Q5SW79 1584 aa14.34□□□□□ -0.11
TPM3-203ENST00000312970 ERCC6L2Q5T890 1561 aa14.33□□□□□ -0.12
TPM3-203ENST00000312970 NUP160Q12769 1436 aa14.32□□□□□ -0.12
TPM3-203ENST00000312970 FHAD1B1AJZ9 1412 aa14.31□□□□□ -0.12
TPM3-203ENST00000312970 SHROOM2Q13796 1616 aa14.3□□□□□ -0.12
TPM3-203ENST00000312970 ERICH3Q5RHP9 1530 aa14.28□□□□□ -0.12
TPM3-203ENST00000312970 KIF13AQ9H1H9 1805 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms