Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.615e-7■□□□□ 9.1
DDX55Q8NHQ9 PON2-211ENST00000483292 699 ntTSL 310.33□□□□□ -0.765e-7■□□□□ 9.1
DDX55Q8NHQ9 PON2-203ENST00000446142 1099 ntTSL 1 (best)4.29□□□□□ -1.725e-7■□□□□ 9.1
DDX55Q8NHQ9 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.421e-6■□□□□ 9.1
DDX55Q8NHQ9 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC7.89□□□□□ -1.151e-6■□□□□ 9.1
DDX55Q8NHQ9 AK2-207ENST00000482191 599 ntTSL 215.66■□□□□ 0.12e-17■□□□□ 9.1
DDX55Q8NHQ9 AK2-209ENST00000491241 596 ntTSL 313.12□□□□□ -0.312e-17■□□□□ 9.1
DDX55Q8NHQ9 AK2-215ENST00000629371 3576 ntTSL 3 BASIC11.36□□□□□ -0.599e-10■□□□□ 9.1
DDX55Q8NHQ9 AK2-202ENST00000373449 3586 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.69e-10■□□□□ 9.1
DDX55Q8NHQ9 FCGRT-206ENST00000594823 819 ntTSL 518.95■□□□□ 0.622e-7■□□□□ 9.1
DDX55Q8NHQ9 FCGRT-204ENST00000593381 566 ntTSL 415.89■□□□□ 0.132e-7■□□□□ 9.1
DDX55Q8NHQ9 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.763e-11■□□□□ 9.1
DDX55Q8NHQ9 PHPT1-205ENST00000492540 1316 ntTSL 1 (best)24.19■■□□□ 1.463e-11■□□□□ 9.1
DDX55Q8NHQ9 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC22.04■■□□□ 1.123e-11■□□□□ 9.1
DDX55Q8NHQ9 PHPT1-204ENST00000463215 627 ntTSL 217.98■□□□□ 0.473e-11■□□□□ 9.1
DDX55Q8NHQ9 PHPT1-203ENST00000462205 619 ntTSL 317.55■□□□□ 0.43e-11■□□□□ 9.1
DDX55Q8NHQ9 PHPT1-206ENST00000497413 618 ntTSL 216.54■□□□□ 0.243e-11■□□□□ 9.1
DDX55Q8NHQ9 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.136e-10■□□□□ 9
DDX55Q8NHQ9 FLNB-203ENST00000419752 2002 ntTSL 5 BASIC12.86□□□□□ -0.356e-10■□□□□ 9
DDX55Q8NHQ9 FLNB-204ENST00000429972 9430 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.376e-10■□□□□ 9
DDX55Q8NHQ9 FLNB-201ENST00000295956 9463 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.386e-10■□□□□ 9
DDX55Q8NHQ9 FLNB-202ENST00000358537 9391 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.526e-10■□□□□ 9
DDX55Q8NHQ9 FLNB-211ENST00000484981 932 ntTSL 511.62□□□□□ -0.556e-10■□□□□ 9
DDX55Q8NHQ9 FLNB-210ENST00000481470 6497 ntTSL 1 (best)11.4□□□□□ -0.586e-10■□□□□ 9
DDX55Q8NHQ9 EBP-201ENST00000276096 904 ntTSL 220.5■□□□□ 0.875e-7■□□□□ 9
DDX55Q8NHQ9 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.295e-7■□□□□ 9
DDX55Q8NHQ9 UBXN1-206ENST00000525717 1257 ntTSL 325.88■■□□□ 1.734e-9■□□□□ 9
DDX55Q8NHQ9 UBXN1-204ENST00000524762 763 ntTSL 323.26■■□□□ 1.314e-9■□□□□ 9
DDX55Q8NHQ9 UBXN1-208ENST00000527421 1085 ntTSL 522.81■■□□□ 1.244e-9■□□□□ 9
DDX55Q8NHQ9 UBXN1-216ENST00000533908 739 ntTSL 1 (best)22.7■■□□□ 1.224e-9■□□□□ 9
DDX55Q8NHQ9 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC21.5■■□□□ 1.034e-9■□□□□ 9
DDX55Q8NHQ9 UBXN1-215ENST00000533476 1912 ntTSL 220.79■□□□□ 0.924e-9■□□□□ 9
DDX55Q8NHQ9 UBXN1-207ENST00000526919 759 ntTSL 320.49■□□□□ 0.874e-9■□□□□ 9
DDX55Q8NHQ9 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC20.13■□□□□ 0.814e-9■□□□□ 9
DDX55Q8NHQ9 UBXN1-213ENST00000532904 2073 ntTSL 219.32■□□□□ 0.684e-9■□□□□ 9
DDX55Q8NHQ9 UBXN1-217ENST00000534176 943 ntTSL 318.9■□□□□ 0.624e-9■□□□□ 9
DDX55Q8NHQ9 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.534e-9■□□□□ 9
DDX55Q8NHQ9 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC18.36■□□□□ 0.534e-9■□□□□ 9
DDX55Q8NHQ9 UBXN1-209ENST00000528907 861 ntTSL 217.16■□□□□ 0.344e-9■□□□□ 9
DDX55Q8NHQ9 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC30.49■■■□□ 2.471e-7■□□□□ 9
DDX55Q8NHQ9 AL121845.3-203ENST00000496820 507 ntTSL 528.65■■■□□ 2.181e-7■□□□□ 9
DDX55Q8NHQ9 AL121845.3-202ENST00000632538 872 ntAPPRIS P1 TSL 325.1■■□□□ 1.611e-7■□□□□ 9
DDX55Q8NHQ9 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC17.4■□□□□ 0.381e-7■□□□□ 9
DDX55Q8NHQ9 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC17.14■□□□□ 0.331e-7■□□□□ 9
DDX55Q8NHQ9 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.311e-7■□□□□ 9
DDX55Q8NHQ9 SRSF3-203ENST00000477442 1095 ntTSL 516.37■□□□□ 0.211e-7■□□□□ 9
DDX55Q8NHQ9 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.21e-7■□□□□ 9
DDX55Q8NHQ9 SRSF3-206ENST00000620242 544 ntTSL 215.5■□□□□ 0.071e-7■□□□□ 9
DDX55Q8NHQ9 SRSF3-201ENST00000339436 1518 ntTSL 215.47■□□□□ 0.071e-7■□□□□ 9
DDX55Q8NHQ9 SRSF3-204ENST00000613941 595 ntTSL 413.62□□□□□ -0.231e-7■□□□□ 9
DDX55Q8NHQ9 PSAP-204ENST00000495196 344 ntTSL 215.27■□□□□ 0.044e-25■□□□□ 9
DDX55Q8NHQ9 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC22.76■■□□□ 1.232e-18■□□□□ 9
DDX55Q8NHQ9 CHCHD3-202ENST00000423635 1310 ntTSL 1 (best)21.31■■□□□ 12e-18■□□□□ 9
DDX55Q8NHQ9 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.762e-18■□□□□ 9
DDX55Q8NHQ9 AC008038.1-201ENST00000634247 1314 ntBASIC15.89■□□□□ 0.132e-18■□□□□ 9
DDX55Q8NHQ9 CHCHD3-206ENST00000496427 721 ntTSL 58.8□□□□□ -12e-18■□□□□ 9
DDX55Q8NHQ9 CHCHD3-205ENST00000481152 1367 ntTSL 25.35□□□□□ -1.552e-18■□□□□ 9
DDX55Q8NHQ9 OPLAH-202ENST00000531027 500 ntTSL 217.58■□□□□ 0.44e-6■□□□□ 9
DDX55Q8NHQ9 OPLAH-204ENST00000618853 4031 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.094e-6■□□□□ 9
DDX55Q8NHQ9 BRD2-207ENST00000463639 946 ntTSL 27.29□□□□□ -1.242e-8■□□□□ 9
DDX55Q8NHQ9 C2orf68-203ENST00000420686 1204 ntTSL 219.29■□□□□ 0.683e-19■□□□□ 9
DDX55Q8NHQ9 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.213e-19■□□□□ 9
DDX55Q8NHQ9 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.153e-17■□□□□ 9
DDX55Q8NHQ9 MRPS15-202ENST00000462067 1612 ntTSL 211.83□□□□□ -0.523e-17■□□□□ 9
DDX55Q8NHQ9 MRPS15-204ENST00000488606 2127 ntTSL 29.96□□□□□ -0.823e-17■□□□□ 9
DDX55Q8NHQ9 MRPS15-203ENST00000477040 533 ntTSL 27.34□□□□□ -1.233e-17■□□□□ 9
DDX55Q8NHQ9 LDHA-219ENST00000541097 582 ntTSL 38.39□□□□□ -1.078e-17■□□□□ 9
DDX55Q8NHQ9 ARF1-209ENST00000478424 1059 ntTSL 230.91■■■□□ 2.542e-12■□□□□ 9
DDX55Q8NHQ9 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.792e-12■□□□□ 9
DDX55Q8NHQ9 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.82e-12■□□□□ 9
DDX55Q8NHQ9 ARF1-201ENST00000272102 1888 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.352e-12■□□□□ 9
DDX55Q8NHQ9 SELENOP-209ENST00000511224 1853 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.92e-42■□□□□ 9
DDX55Q8NHQ9 AGRN-202ENST00000419249 861 ntTSL 322.18■■□□□ 1.147e-12■□□□□ 9
DDX55Q8NHQ9 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.166e-16■□□□□ 9
DDX55Q8NHQ9 FUNDC2-202ENST00000456179 871 ntTSL 311.17□□□□□ -0.626e-16■□□□□ 9
DDX55Q8NHQ9 EIF4B-201ENST00000262056 4148 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.022e-8■□□□□ 9
DDX55Q8NHQ9 FUNDC2-207ENST00000492303 3685 ntTSL 28.11□□□□□ -1.116e-16■□□□□ 9
DDX55Q8NHQ9 FUNDC2-203ENST00000471528 765 ntTSL 37.35□□□□□ -1.236e-16■□□□□ 9
DDX55Q8NHQ9 NARS-201ENST00000256854 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.465e-7■□□□□ 9
DDX55Q8NHQ9 FTL-201ENST00000331825 878 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.121e-323■□□□□ 9
DDX55Q8NHQ9 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC26.18■■□□□ 1.782e-6■□□□□ 9
DDX55Q8NHQ9 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.162e-6■□□□□ 9
DDX55Q8NHQ9 RAPGEF1-201ENST00000372189 6085 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.062e-6■□□□□ 9
DDX55Q8NHQ9 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.044e-20■□□□□ 9
DDX55Q8NHQ9 GPT2-205ENST00000569193 3205 ntTSL 1 (best)13.56□□□□□ -0.244e-20■□□□□ 9
DDX55Q8NHQ9 GPT2-202ENST00000440783 4228 ntTSL 2 BASIC12.89□□□□□ -0.354e-20■□□□□ 9
DDX55Q8NHQ9 PSAT1-201ENST00000347159 1411 ntTSL 1 (best) BASIC15.55■□□□□ 0.082e-10■□□□□ 9
DDX55Q8NHQ9 PSAT1-202ENST00000376588 2188 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.472e-10■□□□□ 9
DDX55Q8NHQ9 ZMAT2-201ENST00000274712 1647 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.512e-10■□□□□ 9
DDX55Q8NHQ9 SNRNP200-208ENST00000497539 2666 ntTSL 1 (best)12.66□□□□□ -0.385e-12■□□□□ 9
DDX55Q8NHQ9 SNRNP200-201ENST00000323853 7165 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.55e-12■□□□□ 9
DDX55Q8NHQ9 BRD4-201ENST00000263377 7169 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.471e-10■□□□□ 9
DDX55Q8NHQ9 MAP7D1-202ENST00000373148 1797 ntTSL 232.24■■■□□ 2.758e-11■□□□□ 9
DDX55Q8NHQ9 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC28.66■■■□□ 2.186e-6■□□□□ 9
DDX55Q8NHQ9 SLC29A4-206ENST00000444741 585 ntTSL 428.47■■■□□ 2.156e-6■□□□□ 9
DDX55Q8NHQ9 PCK2-214ENST00000560736 897 ntTSL 328.33■■■□□ 2.136e-6■□□□□ 9
DDX55Q8NHQ9 CCS-207ENST00000531990 868 ntTSL 225.01■■□□□ 1.596e-6■□□□□ 9
DDX55Q8NHQ9 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC24.99■■□□□ 1.596e-6■□□□□ 9
DDX55Q8NHQ9 HLA-B-256ENST00000639848 1089 ntBASIC24.66■■□□□ 1.546e-6■□□□□ 9
DDX55Q8NHQ9 PSMC5-203ENST00000578570 1680 ntTSL 224.56■■□□□ 1.526e-6■□□□□ 9
Retrieved 100 of 15,504 protein–RNA pairs in 75.4 ms