RNA–Protein interactions for RNA: ENST00000496427.5

CHCHD3-206, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 5

Gene CHCHD3, Length 721 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-206ENST00000496427 AEBP2Q6ZN18 517 aaPredicted RBP23.02■■□□□ 1.28
CHCHD3-206ENST00000496427 CHIC1Q5VXU3 224 aa21.72■■□□□ 1.07
CHCHD3-206ENST00000496427 SENP3Q9H4L4 574 aaPredicted RBP19.83■□□□□ 0.77
CHCHD3-206ENST00000496427 PHF23Q9BUL5 403 aaPredicted RBP19.47■□□□□ 0.71
CHCHD3-206ENST00000496427 FOXD1Q16676 465 aa18.41■□□□□ 0.54
CHCHD3-206ENST00000496427 NISCHQ9Y2I1 1504 aa17.78■□□□□ 0.44
CHCHD3-206ENST00000496427 MSH5O43196 834 aa17.46■□□□□ 0.39
CHCHD3-206ENST00000496427 POTEDQ86YR6 584 aa17.36■□□□□ 0.37
CHCHD3-206ENST00000496427 PLPPR3Q6T4P5 718 aa17.29■□□□□ 0.36
CHCHD3-206ENST00000496427 PIAS4Q8N2W9 510 aaPredicted RBP17.18■□□□□ 0.34
CHCHD3-206ENST00000496427 PPP6R1Q9UPN7 881 aa16.96■□□□□ 0.31
CHCHD3-206ENST00000496427 ADRA2BP18089 450 aa16.9■□□□□ 0.3
CHCHD3-206ENST00000496427 ABCC9O60706 1549 aa16.26■□□□□ 0.19
CHCHD3-206ENST00000496427 CCDC180Q9P1Z9 1646 aa16.13■□□□□ 0.17
CHCHD3-206ENST00000496427 SCAF1Q9H7N4 1312 aaKnown RBP15.66■□□□□ 0.1
CHCHD3-206ENST00000496427 DMRT2Q9Y5R5 561 aa15.65■□□□□ 0.1
CHCHD3-206ENST00000496427 MAPK8IP2Q13387 824 aaPredicted RBP15.57■□□□□ 0.08
CHCHD3-206ENST00000496427 RB1CC1Q8TDY2 1594 aa15.38■□□□□ 0.05
CHCHD3-206ENST00000496427 DNAJC5BQ9UF47 199 aa15.35■□□□□ 0.05
CHCHD3-206ENST00000496427 UNC13AQ9UPW8 1703 aa15.25■□□□□ 0.03
CHCHD3-206ENST00000496427 NACADO15069 1562 aa15.19■□□□□ 0.02
CHCHD3-206ENST00000496427 CACNB1Q02641 598 aaPredicted RBP15.07■□□□□ 0
CHCHD3-206ENST00000496427 PPP4R3CPQ6ZMV5 832 aa15.06■□□□□ 0
CHCHD3-206ENST00000496427 PABPN1Q86U42 306 aaKnown RBP eCLIP15.04■□□□□ -0
CHCHD3-206ENST00000496427 DCAF8L2P0C7V8 631 aa15.03■□□□□ -0
CHCHD3-206ENST00000496427 BICRAQ9NZM4 1560 aa14.99□□□□□ -0.01
CHCHD3-206ENST00000496427 HOXD11P31277 338 aaPredicted RBP14.99□□□□□ -0.01
CHCHD3-206ENST00000496427 DCAF8L1A6NGE4 600 aa14.97□□□□□ -0.01
CHCHD3-206ENST00000496427 CNKSR2Q8WXI2 1034 aa14.9□□□□□ -0.02
CHCHD3-206ENST00000496427 MYO15BQ96JP2 1530 aa14.87□□□□□ -0.03
CHCHD3-206ENST00000496427 RNF216Q9NWF9 866 aaPredicted RBP14.83□□□□□ -0.04
CHCHD3-206ENST00000496427 RNF39Q9H2S5 420 aa14.8□□□□□ -0.04
CHCHD3-206ENST00000496427 ZCCHC6Q5VYS8 1495 aaKnown RBP14.72□□□□□ -0.05
CHCHD3-206ENST00000496427 SCRIBQ14160 1630 aa14.72□□□□□ -0.05
CHCHD3-206ENST00000496427 CC2D2AQ9P2K1 1620 aa14.71□□□□□ -0.05
CHCHD3-206ENST00000496427 C1QBPQ07021 282 aaKnown RBP14.64□□□□□ -0.07
CHCHD3-206ENST00000496427 DCAF1Q9Y4B6 1507 aa14.64□□□□□ -0.07
CHCHD3-206ENST00000496427 SHROOM4Q9ULL8 1493 aa14.63□□□□□ -0.07
CHCHD3-206ENST00000496427 CECR2Q9BXF3 1484 aa14.63□□□□□ -0.07
CHCHD3-206ENST00000496427 EIF4G1Q04637 1599 aaKnown RBP14.61□□□□□ -0.07
CHCHD3-206ENST00000496427 NCBP3Q53F19 620 aaKnown RBP14.5□□□□□ -0.09
CHCHD3-206ENST00000496427 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.26□□□□□ -0.133e-7■■□□□ 12
CHCHD3-206ENST00000496427 NPM3O75607 178 aaKnown RBP14.17□□□□□ -0.14
CHCHD3-206ENST00000496427 DNAJC5Q9H3Z4 198 aa14.15□□□□□ -0.14
CHCHD3-206ENST00000496427 CUX2O14529 1486 aa14.03□□□□□ -0.16
CHCHD3-206ENST00000496427 ERCC6Q03468 1493 aa14.01□□□□□ -0.17
CHCHD3-206ENST00000496427 SMARCA4P51532 1647 aa13.98□□□□□ -0.17
CHCHD3-206ENST00000496427 NCAPD3P42695 1498 aa13.98□□□□□ -0.17
CHCHD3-206ENST00000496427 ATAD2BQ9ULI0 1458 aa13.95□□□□□ -0.18
CHCHD3-206ENST00000496427 HMGXB3Q12766 1538 aa13.94□□□□□ -0.18
CHCHD3-206ENST00000496427 NESP48681 1621 aa13.93□□□□□ -0.18
CHCHD3-206ENST00000496427 SMARCA2P51531 1590 aa13.92□□□□□ -0.18
CHCHD3-206ENST00000496427 U3KPZ7 1027 aaPredicted RBP13.89□□□□□ -0.19
CHCHD3-206ENST00000496427 THOC2Q8NI27 1593 aaKnown RBP13.88□□□□□ -0.19
CHCHD3-206ENST00000496427 KIF21AQ7Z4S6 1674 aa13.87□□□□□ -0.19
CHCHD3-206ENST00000496427 BAZ1BQ9UIG0 1483 aaKnown RBP13.83□□□□□ -0.2
CHCHD3-206ENST00000496427 BAZ1AQ9NRL2 1556 aaPredicted RBP13.82□□□□□ -0.2
CHCHD3-206ENST00000496427 PEG3Q9GZU2 1588 aa13.79□□□□□ -0.2
CHCHD3-206ENST00000496427 CAPN15O75808 1086 aa13.78□□□□□ -0.2
CHCHD3-206ENST00000496427 LAMC3Q9Y6N6 1575 aa13.78□□□□□ -0.2
CHCHD3-206ENST00000496427 DSG3P32926 999 aa13.76□□□□□ -0.21
CHCHD3-206ENST00000496427 MROH2BQ7Z745 1585 aa13.75□□□□□ -0.21
CHCHD3-206ENST00000496427 SPINK5Q9NQ38 1064 aaPredicted RBP13.73□□□□□ -0.21
CHCHD3-206ENST00000496427 APLP2Q06481 763 aa13.67□□□□□ -0.22
CHCHD3-206ENST00000496427 WIZO95785 1651 aa13.65□□□□□ -0.22
CHCHD3-206ENST00000496427 KCNA4P22459 653 aa13.63□□□□□ -0.23
CHCHD3-206ENST00000496427 PDS5BQ9NTI5 1447 aa13.61□□□□□ -0.23
CHCHD3-206ENST00000496427 POTEHQ6S545 545 aa13.59□□□□□ -0.23
CHCHD3-206ENST00000496427 WDR62O43379 1518 aa13.58□□□□□ -0.24
CHCHD3-206ENST00000496427 MRC2Q9UBG0 1479 aa13.57□□□□□ -0.24
CHCHD3-206ENST00000496427 SLC4A2P04920 1241 aa13.57□□□□□ -0.24
CHCHD3-206ENST00000496427 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.56□□□□□ -0.24
CHCHD3-206ENST00000496427 HNRNPUL2Q1KMD3 747 aaKnown RBP13.56□□□□□ -0.24
CHCHD3-206ENST00000496427 ZNF219Q9P2Y4 722 aaPredicted RBP13.55□□□□□ -0.24
CHCHD3-206ENST00000496427 TRIM41Q8WV44 630 aa13.54□□□□□ -0.24
CHCHD3-206ENST00000496427 CADPSQ9ULU8 1353 aa13.53□□□□□ -0.24
CHCHD3-206ENST00000496427 CEP164Q9UPV0 1460 aa13.49□□□□□ -0.25
CHCHD3-206ENST00000496427 TRHP20396 242 aaPredicted RBP13.48□□□□□ -0.25
CHCHD3-206ENST00000496427 PRDM2Q13029 1718 aa13.47□□□□□ -0.25
CHCHD3-206ENST00000496427 FANCD2Q9BXW9 1451 aa13.44□□□□□ -0.26
CHCHD3-206ENST00000496427 SAMD1Q6SPF0 538 aaPredicted RBP13.43□□□□□ -0.26
CHCHD3-206ENST00000496427 TOP2AP11388 1531 aaKnown RBP13.39□□□□□ -0.27
CHCHD3-206ENST00000496427 URB2Q14146 1524 aaKnown RBP13.39□□□□□ -0.27
CHCHD3-206ENST00000496427 ABCB7O75027 752 aa13.38□□□□□ -0.27
CHCHD3-206ENST00000496427 CFTRP13569 1480 aa13.37□□□□□ -0.27
CHCHD3-206ENST00000496427 RIMBP3CA6NJZ7 1639 aa13.32□□□□□ -0.28
CHCHD3-206ENST00000496427 RIMBP3BA6NNM3 1639 aa13.32□□□□□ -0.28
CHCHD3-206ENST00000496427 RIMBP3Q9UFD9 1639 aa13.32□□□□□ -0.28
CHCHD3-206ENST00000496427 RSF1Q96T23 1441 aaPredicted RBP13.31□□□□□ -0.28
CHCHD3-206ENST00000496427 OSCARQ8IYS5 282 aa13.26□□□□□ -0.29
CHCHD3-206ENST00000496427 RBM42Q9BTD8 480 aaKnown RBP13.26□□□□□ -0.29
CHCHD3-206ENST00000496427 ZNF608Q9ULD9 1512 aaPredicted RBP13.25□□□□□ -0.29
CHCHD3-206ENST00000496427 CHD1O14646 1710 aa13.25□□□□□ -0.29
CHCHD3-206ENST00000496427 EIF4G3O43432 1585 aaKnown RBP13.24□□□□□ -0.29
CHCHD3-206ENST00000496427 CCDC88BA6NC98 1476 aa13.2□□□□□ -0.3
CHCHD3-206ENST00000496427 ARHGEF11O15085 1522 aa13.19□□□□□ -0.3
CHCHD3-206ENST00000496427 TOPBP1Q92547 1522 aa13.19□□□□□ -0.3
CHCHD3-206ENST00000496427 IFT140Q96RY7 1462 aa13.19□□□□□ -0.3
CHCHD3-206ENST00000496427 MYCNP04198 464 aaPredicted RBP13.19□□□□□ -0.3
CHCHD3-206ENST00000496427 DNMBPQ6XZF7 1577 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 143.5 ms