RNA–Protein interactions for RNA: ENST00000531990.1

CCS-207, Transcript of copper chaperone for superoxide dismutase, humanhuman

TSL 2

Gene CCS, Length 868 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCS-207ENST00000531990 NISCHQ9Y2I1 1504 aa50.04■■■■■ 5.6
CCS-207ENST00000531990 CCDC180Q9P1Z9 1646 aa44.46■■■■■ 4.71
CCS-207ENST00000531990 ABCC9O60706 1549 aa43.25■■■■■ 4.51
CCS-207ENST00000531990 DCAF8L2P0C7V8 631 aa41.78■■■■■ 4.28
CCS-207ENST00000531990 RB1CC1Q8TDY2 1594 aa41.75■■■■■ 4.27
CCS-207ENST00000531990 NACADO15069 1562 aa41.73■■■■■ 4.27
CCS-207ENST00000531990 ZCCHC6Q5VYS8 1495 aaKnown RBP41.72■■■■■ 4.27
CCS-207ENST00000531990 MYO15BQ96JP2 1530 aa41.52■■■■■ 4.24
CCS-207ENST00000531990 DCAF1Q9Y4B6 1507 aa41.42■■■■■ 4.22
CCS-207ENST00000531990 UNC13AQ9UPW8 1703 aa40.78■■■■■ 4.12
CCS-207ENST00000531990 SCRIBQ14160 1630 aa40.55■■■■■ 4.08
CCS-207ENST00000531990 PABPN1Q86U42 306 aaKnown RBP eCLIP40.43■■■■■ 4.06
CCS-207ENST00000531990 BICRAQ9NZM4 1560 aa40.4■■■■■ 4.06
CCS-207ENST00000531990 SHROOM4Q9ULL8 1493 aa40.05■■■■■ 4
CCS-207ENST00000531990 DNAJC5BQ9UF47 199 aa39.42■■■■□ 3.9
CCS-207ENST00000531990 EIF4G1Q04637 1599 aaKnown RBP39.35■■■■□ 3.89
CCS-207ENST00000531990 CC2D2AQ9P2K1 1620 aa39.14■■■■□ 3.86
CCS-207ENST00000531990 CECR2Q9BXF3 1484 aa38.92■■■■□ 3.82
CCS-207ENST00000531990 SMARCA4P51532 1647 aa38.81■■■■□ 3.8
CCS-207ENST00000531990 BAZ1AQ9NRL2 1556 aaPredicted RBP38.8■■■■□ 3.8
CCS-207ENST00000531990 MROH2BQ7Z745 1585 aa38.55■■■■□ 3.76
CCS-207ENST00000531990 SMARCA2P51531 1590 aa38.53■■■■□ 3.76
CCS-207ENST00000531990 ATAD2BQ9ULI0 1458 aa38.51■■■■□ 3.76
CCS-207ENST00000531990 NCAPD3P42695 1498 aa38.46■■■■□ 3.75
CCS-207ENST00000531990 PEG3Q9GZU2 1588 aa38.4■■■■□ 3.74
CCS-207ENST00000531990 HMGXB3Q12766 1538 aa38.33■■■■□ 3.73
CCS-207ENST00000531990 BAZ1BQ9UIG0 1483 aaKnown RBP38.25■■■■□ 3.71
CCS-207ENST00000531990 RSF1Q96T23 1441 aaPredicted RBP38.17■■■■□ 3.7
CCS-207ENST00000531990 WIZO95785 1651 aa38.17■■■■□ 3.7
CCS-207ENST00000531990 TOP2AP11388 1531 aaKnown RBP37.79■■■■□ 3.64
CCS-207ENST00000531990 LAMC3Q9Y6N6 1575 aa37.46■■■■□ 3.59
CCS-207ENST00000531990 NESP48681 1621 aa37.46■■■■□ 3.59
CCS-207ENST00000531990 SUPT5HO00267 1087 aaKnown RBP37.42■■■■□ 3.58
CCS-207ENST00000531990 CADPSQ9ULU8 1353 aa37.36■■■■□ 3.57
CCS-207ENST00000531990 CCDC88BA6NC98 1476 aa37.32■■■■□ 3.56
CCS-207ENST00000531990 ERCC6Q03468 1493 aa37.32■■■■□ 3.56
CCS-207ENST00000531990 PDS5BQ9NTI5 1447 aa37.2■■■■□ 3.55
CCS-207ENST00000531990 CFTRP13569 1480 aa37.18■■■■□ 3.54
CCS-207ENST00000531990 KIF21AQ7Z4S6 1674 aa37.09■■■■□ 3.53
CCS-207ENST00000531990 PRDM2Q13029 1718 aa37■■■■□ 3.51
CCS-207ENST00000531990 FANCD2Q9BXW9 1451 aa36.94■■■■□ 3.5
CCS-207ENST00000531990 CEP164Q9UPV0 1460 aa36.9■■■■□ 3.5
CCS-207ENST00000531990 THOC2Q8NI27 1593 aaKnown RBP36.88■■■■□ 3.49
CCS-207ENST00000531990 CUX2O14529 1486 aa36.82■■■■□ 3.49
CCS-207ENST00000531990 MRC2Q9UBG0 1479 aa36.8■■■■□ 3.48
CCS-207ENST00000531990 WDR62O43379 1518 aa36.65■■■■□ 3.46
CCS-207ENST00000531990 URB2Q14146 1524 aaKnown RBP36.54■■■■□ 3.44
CCS-207ENST00000531990 ABCC8Q09428 1581 aa36.44■■■■□ 3.42
CCS-207ENST00000531990 TOPBP1Q92547 1522 aa36.38■■■■□ 3.41
CCS-207ENST00000531990 DNMBPQ6XZF7 1577 aa36.37■■■■□ 3.41
CCS-207ENST00000531990 CUX1P39880 1505 aa36.16■■■■□ 3.38
CCS-207ENST00000531990 IFT140Q96RY7 1462 aa36.11■■■■□ 3.37
CCS-207ENST00000531990 POLA1P09884 1462 aaPredicted RBP36.07■■■■□ 3.37
CCS-207ENST00000531990 WRNQ14191 1432 aaPredicted RBP eCLIP36.03■■■■□ 3.36
CCS-207ENST00000531990 FGD5Q6ZNL6 1462 aa36.03■■■■□ 3.36
CCS-207ENST00000531990 DNAJC5Q9H3Z4 198 aa35.96■■■■□ 3.35
CCS-207ENST00000531990 TARBP1Q13395 1621 aaKnown RBP35.96■■■■□ 3.35
CCS-207ENST00000531990 SOGA1O94964 1423 aa35.94■■■■□ 3.34
CCS-207ENST00000531990 TOP2BQ02880 1626 aa35.94■■■■□ 3.34
CCS-207ENST00000531990 BIVM-ERCC5R4GMW8 1640 aa35.94■■■■□ 3.34
CCS-207ENST00000531990 SYNJ1O43426 1573 aa35.91■■■■□ 3.34
CCS-207ENST00000531990 RAD54L2Q9Y4B4 1467 aa35.9■■■■□ 3.34
CCS-207ENST00000531990 ZNF608Q9ULD9 1512 aaPredicted RBP35.88■■■■□ 3.33
CCS-207ENST00000531990 EIF4G3O43432 1585 aaKnown RBP35.8■■■■□ 3.32
CCS-207ENST00000531990 WDR97A6NE52 1622 aa35.73■■■■□ 3.31
CCS-207ENST00000531990 AQRO60306 1485 aaKnown RBP eCLIP35.73■■■■□ 3.311e-16■■■■■ 45.5
CCS-207ENST00000531990 TDRD9Q8NDG6 1382 aaKnown RBP35.69■■■■□ 3.3
CCS-207ENST00000531990 ABCA10Q8WWZ4 1543 aa35.68■■■■□ 3.3
CCS-207ENST00000531990 GAPVD1Q14C86 1478 aa35.54■■■■□ 3.28
CCS-207ENST00000531990 ABCA5Q8WWZ7 1642 aa35.54■■■■□ 3.28
CCS-207ENST00000531990 GRIN2BQ13224 1484 aa35.51■■■■□ 3.28
CCS-207ENST00000531990 PBRM1Q86U86 1689 aa35.49■■■■□ 3.27
CCS-207ENST00000531990 SNAPC4Q5SXM2 1469 aa35.41■■■■□ 3.26
CCS-207ENST00000531990 MAGI1Q96QZ7 1491 aaPredicted RBP35.4■■■■□ 3.26
CCS-207ENST00000531990 TRIM41Q8WV44 630 aa35.35■■■■□ 3.25
CCS-207ENST00000531990 OSCARQ8IYS5 282 aa35.34■■■■□ 3.25
CCS-207ENST00000531990 CHD1O14646 1710 aa35.34■■■■□ 3.25
CCS-207ENST00000531990 FBLN2P98095 1184 aa35.32■■■■□ 3.24
CCS-207ENST00000531990 KIF27Q86VH2 1401 aa35.29■■■■□ 3.24
CCS-207ENST00000531990 ERICH3Q5RHP9 1530 aa35.28■■■■□ 3.24
CCS-207ENST00000531990 SYNJ2O15056 1496 aa35.25■■■■□ 3.23
CCS-207ENST00000531990 CHMP7Q8WUX9 453 aaPredicted RBP35.25■■■■□ 3.23
CCS-207ENST00000531990 ADAMTS12P58397 1594 aa35.18■■■■□ 3.22
CCS-207ENST00000531990 FHAD1B1AJZ9 1412 aa35.14■■■■□ 3.22
CCS-207ENST00000531990 IGF1RP08069 1367 aa35.05■■■■□ 3.2
CCS-207ENST00000531990 GRIN2AQ12879 1464 aa35.04■■■■□ 3.2
CCS-207ENST00000531990 CUL7Q14999 1698 aa35.03■■■■□ 3.2
CCS-207ENST00000531990 CHIC1Q5VXU3 224 aa34.99■■■■□ 3.19
CCS-207ENST00000531990 RUSC2Q8N2Y8 1516 aa34.95■■■■□ 3.19
CCS-207ENST00000531990 CLASP1Q7Z460 1538 aa34.91■■■■□ 3.18
CCS-207ENST00000531990 CARMIL1Q5VZK9 1371 aa34.88■■■■□ 3.17
CCS-207ENST00000531990 NUP160Q12769 1436 aa34.86■■■■□ 3.17
CCS-207ENST00000531990 CEP170Q5SW79 1584 aa34.84■■■■□ 3.17
CCS-207ENST00000531990 EEA1Q15075 1411 aa34.75■■■■□ 3.15
CCS-207ENST00000531990 ARHGEF11O15085 1522 aa34.75■■■■□ 3.15
CCS-207ENST00000531990 RIMBP3CA6NJZ7 1639 aa34.73■■■■□ 3.15
CCS-207ENST00000531990 RIMBP3BA6NNM3 1639 aa34.73■■■■□ 3.15
CCS-207ENST00000531990 RIMBP3Q9UFD9 1639 aa34.73■■■■□ 3.15
CCS-207ENST00000531990 RAPGEF2Q9Y4G8 1499 aa34.71■■■■□ 3.15
CCS-207ENST00000531990 CSRNP3Q8WYN3 585 aa34.65■■■■□ 3.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms