RNA–Protein interactions for RNA: ENST00000497539.5

SNRNP200-208, Transcript of small nuclear ribonucleoprotein U5 subunit 200, humanhuman

TSL 1 (best)

Gene SNRNP200, Length 2,666 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP200-208ENST00000497539 NISCHQ9Y2I1 1504 aa25.55■■□□□ 1.68
SNRNP200-208ENST00000497539 CCDC180Q9P1Z9 1646 aa22.29■■□□□ 1.16
SNRNP200-208ENST00000497539 ZCCHC6Q5VYS8 1495 aaKnown RBP21.57■■□□□ 1.04
SNRNP200-208ENST00000497539 DCAF1Q9Y4B6 1507 aa21.28■■□□□ 1
SNRNP200-208ENST00000497539 MYO15BQ96JP2 1530 aa20.93■□□□□ 0.94
SNRNP200-208ENST00000497539 SHROOM4Q9ULL8 1493 aa20.73■□□□□ 0.91
SNRNP200-208ENST00000497539 NACADO15069 1562 aa20.61■□□□□ 0.89
SNRNP200-208ENST00000497539 DCAF8L2P0C7V8 631 aa20.57■□□□□ 0.88
SNRNP200-208ENST00000497539 ABCC9O60706 1549 aa20.49■□□□□ 0.87
SNRNP200-208ENST00000497539 RB1CC1Q8TDY2 1594 aa20.32■□□□□ 0.84
SNRNP200-208ENST00000497539 SCRIBQ14160 1630 aa20.32■□□□□ 0.84
SNRNP200-208ENST00000497539 SUPT5HO00267 1087 aaKnown RBP20.06■□□□□ 0.8
SNRNP200-208ENST00000497539 UNC13AQ9UPW8 1703 aa19.97■□□□□ 0.79
SNRNP200-208ENST00000497539 RSF1Q96T23 1441 aaPredicted RBP19.89■□□□□ 0.77
SNRNP200-208ENST00000497539 CECR2Q9BXF3 1484 aa19.73■□□□□ 0.75
SNRNP200-208ENST00000497539 BICRAQ9NZM4 1560 aa19.72■□□□□ 0.75
SNRNP200-208ENST00000497539 BAZ1AQ9NRL2 1556 aaPredicted RBP19.72■□□□□ 0.75
SNRNP200-208ENST00000497539 MROH2BQ7Z745 1585 aa19.7■□□□□ 0.74
SNRNP200-208ENST00000497539 SMARCA4P51532 1647 aa19.6■□□□□ 0.73
SNRNP200-208ENST00000497539 WIZO95785 1651 aa19.56■□□□□ 0.72
SNRNP200-208ENST00000497539 PELP1Q8IZL8 1130 aaKnown RBP19.55■□□□□ 0.72
SNRNP200-208ENST00000497539 CHIC1Q5VXU3 224 aa19.52■□□□□ 0.72
SNRNP200-208ENST00000497539 PEG3Q9GZU2 1588 aa19.45■□□□□ 0.7
SNRNP200-208ENST00000497539 TOP2AP11388 1531 aaKnown RBP19.45■□□□□ 0.7
SNRNP200-208ENST00000497539 EIF4G1Q04637 1599 aaKnown RBP19.33■□□□□ 0.69
SNRNP200-208ENST00000497539 MYT1Q01538 1121 aa19.31■□□□□ 0.68
SNRNP200-208ENST00000497539 PABPN1Q86U42 306 aaKnown RBP eCLIP19.28■□□□□ 0.686e-7■■□□□ 13.6
SNRNP200-208ENST00000497539 SMARCA2P51531 1590 aa19.25■□□□□ 0.67
SNRNP200-208ENST00000497539 CCDC88BA6NC98 1476 aa19.16■□□□□ 0.66
SNRNP200-208ENST00000497539 ATAD2BQ9ULI0 1458 aa19.15■□□□□ 0.66
SNRNP200-208ENST00000497539 HMGXB3Q12766 1538 aa19.04■□□□□ 0.64
SNRNP200-208ENST00000497539 BAZ1BQ9UIG0 1483 aaKnown RBP19.03■□□□□ 0.64
SNRNP200-208ENST00000497539 NCAPD3P42695 1498 aa18.98■□□□□ 0.63
SNRNP200-208ENST00000497539 TRIM41Q8WV44 630 aa18.93■□□□□ 0.62
SNRNP200-208ENST00000497539 ABCC8Q09428 1581 aa18.8■□□□□ 0.6
SNRNP200-208ENST00000497539 HRCP23327 699 aa18.77■□□□□ 0.6
SNRNP200-208ENST00000497539 PRDM2Q13029 1718 aa18.7■□□□□ 0.58
SNRNP200-208ENST00000497539 WRNQ14191 1432 aaPredicted RBP eCLIP18.68■□□□□ 0.58
SNRNP200-208ENST00000497539 CC2D2AQ9P2K1 1620 aa18.68■□□□□ 0.58
SNRNP200-208ENST00000497539 PCGF6Q9BYE7 350 aa18.67■□□□□ 0.58
SNRNP200-208ENST00000497539 EEA1Q15075 1411 aa18.67■□□□□ 0.58
SNRNP200-208ENST00000497539 TTBK1Q5TCY1 1321 aaPredicted RBP18.66■□□□□ 0.58
SNRNP200-208ENST00000497539 LOC105371045A0A1W2PR82 267 aa18.66■□□□□ 0.58
SNRNP200-208ENST00000497539 SYNJ1O43426 1573 aa18.65■□□□□ 0.58
SNRNP200-208ENST00000497539 BIVM-ERCC5R4GMW8 1640 aa18.63■□□□□ 0.57
SNRNP200-208ENST00000497539 CFTRP13569 1480 aa18.63■□□□□ 0.57
SNRNP200-208ENST00000497539 TOP2BQ02880 1626 aa18.61■□□□□ 0.57
SNRNP200-208ENST00000497539 PPARGC1BQ86YN6 1023 aaKnown RBP18.57■□□□□ 0.56
SNRNP200-208ENST00000497539 SOGA1O94964 1423 aa18.49■□□□□ 0.55
SNRNP200-208ENST00000497539 FAM9AQ8IZU1 332 aaPredicted RBP18.46■□□□□ 0.54
SNRNP200-208ENST00000497539 KIF21BO75037 1637 aa18.45■□□□□ 0.54
SNRNP200-208ENST00000497539 CADPSQ9ULU8 1353 aa18.44■□□□□ 0.54
SNRNP200-208ENST00000497539 CUX1P39880 1505 aa18.43■□□□□ 0.54
SNRNP200-208ENST00000497539 RUSC2Q8N2Y8 1516 aa18.4■□□□□ 0.54
SNRNP200-208ENST00000497539 GOLGA3Q08378 1498 aa18.36■□□□□ 0.53
SNRNP200-208ENST00000497539 CSRNP3Q8WYN3 585 aa18.36■□□□□ 0.53
SNRNP200-208ENST00000497539 TNIKQ9UKE5 1360 aa18.36■□□□□ 0.53
SNRNP200-208ENST00000497539 CEP164Q9UPV0 1460 aa18.34■□□□□ 0.53
SNRNP200-208ENST00000497539 LAMC3Q9Y6N6 1575 aa18.31■□□□□ 0.52
SNRNP200-208ENST00000497539 ERICH3Q5RHP9 1530 aa18.27■□□□□ 0.51
SNRNP200-208ENST00000497539 CEP162Q5TB80 1403 aa18.24■□□□□ 0.51
SNRNP200-208ENST00000497539 FANCD2Q9BXW9 1451 aa18.24■□□□□ 0.51
SNRNP200-208ENST00000497539 DNMBPQ6XZF7 1577 aa18.22■□□□□ 0.51
SNRNP200-208ENST00000497539 PRXQ9BXM0 1461 aa18.21■□□□□ 0.51
SNRNP200-208ENST00000497539 KIF27Q86VH2 1401 aa18.18■□□□□ 0.5
SNRNP200-208ENST00000497539 TRIM26Q12899 539 aaPredicted RBP18.16■□□□□ 0.5
SNRNP200-208ENST00000497539 FGD5Q6ZNL6 1462 aa18.14■□□□□ 0.49
SNRNP200-208ENST00000497539 RAPGEF2Q9Y4G8 1499 aa18.14■□□□□ 0.49
SNRNP200-208ENST00000497539 NESP48681 1621 aa18.12■□□□□ 0.49
SNRNP200-208ENST00000497539 TOPBP1Q92547 1522 aa18.1■□□□□ 0.49
SNRNP200-208ENST00000497539 WDR97A6NE52 1622 aa18.07■□□□□ 0.48
SNRNP200-208ENST00000497539 ABCA10Q8WWZ4 1543 aa18.06■□□□□ 0.48
SNRNP200-208ENST00000497539 EHMT2Q96KQ7 1210 aa18.06■□□□□ 0.48
SNRNP200-208ENST00000497539 PDS5BQ9NTI5 1447 aa18.06■□□□□ 0.48
SNRNP200-208ENST00000497539 CUX2O14529 1486 aa18.03■□□□□ 0.48
SNRNP200-208ENST00000497539 UBTFP17480 764 aaKnown RBP18.03■□□□□ 0.48
SNRNP200-208ENST00000497539 POLA1P09884 1462 aaPredicted RBP18.02■□□□□ 0.48
SNRNP200-208ENST00000497539 URB2Q14146 1524 aaKnown RBP18.02■□□□□ 0.48
SNRNP200-208ENST00000497539 KIF21AQ7Z4S6 1674 aa18.02■□□□□ 0.47
SNRNP200-208ENST00000497539 CLIP1P30622 1438 aa18.01■□□□□ 0.47
SNRNP200-208ENST00000497539 PRKCSHP14314 528 aaPredicted RBP18■□□□□ 0.47
SNRNP200-208ENST00000497539 IGF1RP08069 1367 aa17.98■□□□□ 0.47
SNRNP200-208ENST00000497539 CUL7Q14999 1698 aa17.96■□□□□ 0.47
SNRNP200-208ENST00000497539 VPS8Q8N3P4 1428 aa17.95■□□□□ 0.46
SNRNP200-208ENST00000497539 ABCA5Q8WWZ7 1642 aa17.94■□□□□ 0.46
SNRNP200-208ENST00000497539 RAD54L2Q9Y4B4 1467 aa17.89■□□□□ 0.46
SNRNP200-208ENST00000497539 DNAJC5BQ9UF47 199 aa17.89■□□□□ 0.45
SNRNP200-208ENST00000497539 TARBP1Q13395 1621 aaKnown RBP17.88■□□□□ 0.45
SNRNP200-208ENST00000497539 ARAP1Q96P48 1450 aa17.88■□□□□ 0.45
SNRNP200-208ENST00000497539 CARMIL1Q5VZK9 1371 aa17.86■□□□□ 0.45
SNRNP200-208ENST00000497539 MRC2Q9UBG0 1479 aa17.86■□□□□ 0.45
SNRNP200-208ENST00000497539 WDR62O43379 1518 aa17.81■□□□□ 0.44
SNRNP200-208ENST00000497539 ARHGAP35Q9NRY4 1499 aa17.8■□□□□ 0.44
SNRNP200-208ENST00000497539 CTTNBP2Q8WZ74 1663 aa17.8■□□□□ 0.44
SNRNP200-208ENST00000497539 GAPVD1Q14C86 1478 aa17.75■□□□□ 0.43
SNRNP200-208ENST00000497539 APLP2Q06481 763 aa17.75■□□□□ 0.43
SNRNP200-208ENST00000497539 PBRM1Q86U86 1689 aa17.74■□□□□ 0.43
SNRNP200-208ENST00000497539 EFCAB5A4FU69 1503 aa17.74■□□□□ 0.43
SNRNP200-208ENST00000497539 ERICH6Q7L0X2 663 aa17.73■□□□□ 0.43
SNRNP200-208ENST00000497539 MAP3K1Q13233 1512 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms