RNA–Protein interactions for RNA: ENST00000448878.6

CHCHD3-203, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 5 BASIC

Gene CHCHD3, Length 1,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-203ENST00000448878 NISCHQ9Y2I1 1504 aa45.38■■■■■ 4.86
CHCHD3-203ENST00000448878 ABCC9O60706 1549 aa41.36■■■■■ 4.21
CHCHD3-203ENST00000448878 CCDC180Q9P1Z9 1646 aa40.82■■■■■ 4.12
CHCHD3-203ENST00000448878 RB1CC1Q8TDY2 1594 aa39.12■■■■□ 3.85
CHCHD3-203ENST00000448878 DNAJC5BQ9UF47 199 aa39.1■■■■□ 3.85
CHCHD3-203ENST00000448878 DCAF8L2P0C7V8 631 aa38.82■■■■□ 3.8
CHCHD3-203ENST00000448878 NACADO15069 1562 aa38.72■■■■□ 3.79
CHCHD3-203ENST00000448878 PABPN1Q86U42 306 aaKnown RBP eCLIP38.52■■■■□ 3.76
CHCHD3-203ENST00000448878 UNC13AQ9UPW8 1703 aa38.18■■■■□ 3.7
CHCHD3-203ENST00000448878 MYO15BQ96JP2 1530 aa37.97■■■■□ 3.67
CHCHD3-203ENST00000448878 BICRAQ9NZM4 1560 aa37.93■■■■□ 3.66
CHCHD3-203ENST00000448878 ZCCHC6Q5VYS8 1495 aaKnown RBP37.49■■■■□ 3.59
CHCHD3-203ENST00000448878 DCAF1Q9Y4B6 1507 aa37.36■■■■□ 3.57
CHCHD3-203ENST00000448878 SCRIBQ14160 1630 aa37.31■■■■□ 3.56
CHCHD3-203ENST00000448878 SHROOM4Q9ULL8 1493 aa37.31■■■■□ 3.56
CHCHD3-203ENST00000448878 CC2D2AQ9P2K1 1620 aa37.27■■■■□ 3.56
CHCHD3-203ENST00000448878 CECR2Q9BXF3 1484 aa37.26■■■■□ 3.55
CHCHD3-203ENST00000448878 EIF4G1Q04637 1599 aaKnown RBP37.08■■■■□ 3.53
CHCHD3-203ENST00000448878 DNAJC5Q9H3Z4 198 aa36.17■■■■□ 3.38
CHCHD3-203ENST00000448878 ERCC6Q03468 1493 aa35.77■■■■□ 3.32
CHCHD3-203ENST00000448878 NCAPD3P42695 1498 aa35.75■■■■□ 3.31
CHCHD3-203ENST00000448878 CUX2O14529 1486 aa35.69■■■■□ 3.3
CHCHD3-203ENST00000448878 ATAD2BQ9ULI0 1458 aa35.61■■■■□ 3.29
CHCHD3-203ENST00000448878 SMARCA2P51531 1590 aa35.5■■■■□ 3.27
CHCHD3-203ENST00000448878 SMARCA4P51532 1647 aa35.48■■■■□ 3.27
CHCHD3-203ENST00000448878 HMGXB3Q12766 1538 aa35.42■■■■□ 3.26
CHCHD3-203ENST00000448878 NESP48681 1621 aa35.39■■■■□ 3.26
CHCHD3-203ENST00000448878 BAZ1BQ9UIG0 1483 aaKnown RBP35.3■■■■□ 3.24
CHCHD3-203ENST00000448878 BAZ1AQ9NRL2 1556 aaPredicted RBP35.26■■■■□ 3.24
CHCHD3-203ENST00000448878 PEG3Q9GZU2 1588 aa35.04■■■■□ 3.2
CHCHD3-203ENST00000448878 LAMC3Q9Y6N6 1575 aa35.02■■■■□ 3.2
CHCHD3-203ENST00000448878 THOC2Q8NI27 1593 aaKnown RBP35■■■■□ 3.19
CHCHD3-203ENST00000448878 MROH2BQ7Z745 1585 aa35■■■■□ 3.19
CHCHD3-203ENST00000448878 PDS5BQ9NTI5 1447 aa34.89■■■■□ 3.18
CHCHD3-203ENST00000448878 KIF21AQ7Z4S6 1674 aa34.89■■■■□ 3.18
CHCHD3-203ENST00000448878 CADPSQ9ULU8 1353 aa34.71■■■■□ 3.15
CHCHD3-203ENST00000448878 TRIM41Q8WV44 630 aa34.61■■■■□ 3.13
CHCHD3-203ENST00000448878 WIZO95785 1651 aa34.58■■■■□ 3.13
CHCHD3-203ENST00000448878 MRC2Q9UBG0 1479 aa34.58■■■■□ 3.13
CHCHD3-203ENST00000448878 WDR62O43379 1518 aa34.45■■■■□ 3.11
CHCHD3-203ENST00000448878 CEP164Q9UPV0 1460 aa34.4■■■■□ 3.1
CHCHD3-203ENST00000448878 FANCD2Q9BXW9 1451 aa34.33■■■■□ 3.09
CHCHD3-203ENST00000448878 CFTRP13569 1480 aa34.18■■■■□ 3.06
CHCHD3-203ENST00000448878 OSCARQ8IYS5 282 aa34.15■■■■□ 3.06
CHCHD3-203ENST00000448878 RSF1Q96T23 1441 aaPredicted RBP34.13■■■■□ 3.05
CHCHD3-203ENST00000448878 TOP2AP11388 1531 aaKnown RBP34.06■■■■□ 3.04
CHCHD3-203ENST00000448878 URB2Q14146 1524 aaKnown RBP34.04■■■■□ 3.04
CHCHD3-203ENST00000448878 PRDM2Q13029 1718 aa33.77■■■■□ 3
CHCHD3-203ENST00000448878 CCDC88BA6NC98 1476 aa33.74■■■□□ 2.99
CHCHD3-203ENST00000448878 IFT140Q96RY7 1462 aa33.7■■■□□ 2.99
CHCHD3-203ENST00000448878 ZNF608Q9ULD9 1512 aaPredicted RBP33.7■■■□□ 2.99
CHCHD3-203ENST00000448878 RIMBP3CA6NJZ7 1639 aa33.64■■■□□ 2.98
CHCHD3-203ENST00000448878 RIMBP3BA6NNM3 1639 aa33.64■■■□□ 2.98
CHCHD3-203ENST00000448878 RIMBP3Q9UFD9 1639 aa33.64■■■□□ 2.98
CHCHD3-203ENST00000448878 TOPBP1Q92547 1522 aa33.61■■■□□ 2.97
CHCHD3-203ENST00000448878 ABCC8Q09428 1581 aa33.51■■■□□ 2.96
CHCHD3-203ENST00000448878 ARHGEF11O15085 1522 aa33.49■■■□□ 2.95
CHCHD3-203ENST00000448878 EIF4G3O43432 1585 aaKnown RBP33.47■■■□□ 2.95
CHCHD3-203ENST00000448878 DNMBPQ6XZF7 1577 aa33.43■■■□□ 2.94
CHCHD3-203ENST00000448878 CYB5RLQ6IPT4 315 aa33.43■■■□□ 2.94
CHCHD3-203ENST00000448878 FBLN2P98095 1184 aa33.42■■■□□ 2.94
CHCHD3-203ENST00000448878 AQRO60306 1485 aaKnown RBP eCLIP33.4■■■□□ 2.94
CHCHD3-203ENST00000448878 CHD1O14646 1710 aa33.31■■■□□ 2.92
CHCHD3-203ENST00000448878 TARBP1Q13395 1621 aaKnown RBP33.29■■■□□ 2.92
CHCHD3-203ENST00000448878 TRHP20396 242 aaPredicted RBP33.26■■■□□ 2.91
CHCHD3-203ENST00000448878 POLA1P09884 1462 aaPredicted RBP33.24■■■□□ 2.91
CHCHD3-203ENST00000448878 RAD54L2Q9Y4B4 1467 aa33.19■■■□□ 2.9
CHCHD3-203ENST00000448878 TDRD9Q8NDG6 1382 aaKnown RBP33.16■■■□□ 2.9
CHCHD3-203ENST00000448878 SOGA1O94964 1423 aa33.16■■■□□ 2.9
CHCHD3-203ENST00000448878 ARAP1Q96P48 1450 aa33.12■■■□□ 2.89
CHCHD3-203ENST00000448878 CHMP7Q8WUX9 453 aaPredicted RBP33.04■■■□□ 2.88
CHCHD3-203ENST00000448878 SNAPC4Q5SXM2 1469 aa33.02■■■□□ 2.88
CHCHD3-203ENST00000448878 FGD5Q6ZNL6 1462 aa33.01■■■□□ 2.88
CHCHD3-203ENST00000448878 CUX1P39880 1505 aa32.89■■■□□ 2.86
CHCHD3-203ENST00000448878 WDR97A6NE52 1622 aa32.88■■■□□ 2.85
CHCHD3-203ENST00000448878 SYNJ1O43426 1573 aa32.87■■■□□ 2.85
CHCHD3-203ENST00000448878 GRIN2BQ13224 1484 aa32.86■■■□□ 2.85
CHCHD3-203ENST00000448878 MAGI1Q96QZ7 1491 aaPredicted RBP32.86■■■□□ 2.85
CHCHD3-203ENST00000448878 CLASP1Q7Z460 1538 aa32.85■■■□□ 2.85
CHCHD3-203ENST00000448878 SYNJ2O15056 1496 aa32.78■■■□□ 2.84
CHCHD3-203ENST00000448878 GAPVD1Q14C86 1478 aa32.72■■■□□ 2.83
CHCHD3-203ENST00000448878 PBRM1Q86U86 1689 aa32.69■■■□□ 2.82
CHCHD3-203ENST00000448878 SUPT5HO00267 1087 aaKnown RBP32.6■■■□□ 2.81
CHCHD3-203ENST00000448878 AEBP2Q6ZN18 517 aaPredicted RBP32.58■■■□□ 2.81
CHCHD3-203ENST00000448878 ABCA10Q8WWZ4 1543 aa32.56■■■□□ 2.8
CHCHD3-203ENST00000448878 ABCA5Q8WWZ7 1642 aa32.51■■■□□ 2.8
CHCHD3-203ENST00000448878 WRNQ14191 1432 aaPredicted RBP eCLIP32.43■■■□□ 2.78
CHCHD3-203ENST00000448878 GRIN2AQ12879 1464 aa32.42■■■□□ 2.78
CHCHD3-203ENST00000448878 ERCC6L2Q5T890 1561 aa32.38■■■□□ 2.77
CHCHD3-203ENST00000448878 ADAMTS12P58397 1594 aa32.32■■■□□ 2.77
CHCHD3-203ENST00000448878 CEP170Q5SW79 1584 aa32.31■■■□□ 2.76
CHCHD3-203ENST00000448878 NUP160Q12769 1436 aa32.28■■■□□ 2.76
CHCHD3-203ENST00000448878 FHAD1B1AJZ9 1412 aa32.27■■■□□ 2.76
CHCHD3-203ENST00000448878 TOP2BQ02880 1626 aa32.24■■■□□ 2.75
CHCHD3-203ENST00000448878 BIVM-ERCC5R4GMW8 1640 aa32.23■■■□□ 2.75
CHCHD3-203ENST00000448878 ERICH3Q5RHP9 1530 aa32.15■■■□□ 2.74
CHCHD3-203ENST00000448878 SHROOM2Q13796 1616 aa32.15■■■□□ 2.74
CHCHD3-203ENST00000448878 PRG4Q92954 1404 aaPredicted RBP32.11■■■□□ 2.73
CHCHD3-203ENST00000448878 JPH4Q96JJ6 628 aa32.1■■■□□ 2.73
CHCHD3-203ENST00000448878 NPM1P06748 294 aaKnown RBP eCLIP32■■■□□ 2.71
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms