RNA–Protein interactions for RNA: ENST00000316948.8

CACFD1-202, Transcript of calcium channel flower domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CACFD1, Length 2,794 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACFD1-202ENST00000316948 NISCHQ9Y2I1 1504 aa32.57■■■□□ 2.81
CACFD1-202ENST00000316948 SHROOM4Q9ULL8 1493 aa28.19■■■□□ 2.1
CACFD1-202ENST00000316948 SUPT5HO00267 1087 aaKnown RBP27.76■■■□□ 2.03
CACFD1-202ENST00000316948 ZCCHC6Q5VYS8 1495 aaKnown RBP27.59■■■□□ 2.01
CACFD1-202ENST00000316948 CCDC180Q9P1Z9 1646 aa27.47■■□□□ 1.99
CACFD1-202ENST00000316948 HRCP23327 699 aa27.34■■□□□ 1.97
CACFD1-202ENST00000316948 DCAF8L2P0C7V8 631 aa27.2■■□□□ 1.95
CACFD1-202ENST00000316948 MYO15BQ96JP2 1530 aa27.08■■□□□ 1.93
CACFD1-202ENST00000316948 PCGF6Q9BYE7 350 aa27.06■■□□□ 1.92
CACFD1-202ENST00000316948 CHIC1Q5VXU3 224 aa27.03■■□□□ 1.92
CACFD1-202ENST00000316948 PPARGC1BQ86YN6 1023 aaKnown RBP26.9■■□□□ 1.9
CACFD1-202ENST00000316948 DCAF1Q9Y4B6 1507 aa26.6■■□□□ 1.85
CACFD1-202ENST00000316948 LOC105371045A0A1W2PR82 267 aa26.46■■□□□ 1.83
CACFD1-202ENST00000316948 TRIM26Q12899 539 aaPredicted RBP26.19■■□□□ 1.78
CACFD1-202ENST00000316948 ABCC9O60706 1549 aa26.08■■□□□ 1.76
CACFD1-202ENST00000316948 SCRIBQ14160 1630 aa25.98■■□□□ 1.75
CACFD1-202ENST00000316948 RSF1Q96T23 1441 aaPredicted RBP25.92■■□□□ 1.74
CACFD1-202ENST00000316948 ZEB1P37275 1124 aaPredicted RBP25.83■■□□□ 1.72
CACFD1-202ENST00000316948 PELP1Q8IZL8 1130 aaKnown RBP25.78■■□□□ 1.72
CACFD1-202ENST00000316948 TRIM41Q8WV44 630 aa25.75■■□□□ 1.71
CACFD1-202ENST00000316948 RB1CC1Q8TDY2 1594 aa25.72■■□□□ 1.71
CACFD1-202ENST00000316948 SCAF1Q9H7N4 1312 aaKnown RBP25.71■■□□□ 1.71
CACFD1-202ENST00000316948 FAM9AQ8IZU1 332 aaPredicted RBP25.67■■□□□ 1.7
CACFD1-202ENST00000316948 EHMT2Q96KQ7 1210 aa25.59■■□□□ 1.69
CACFD1-202ENST00000316948 CECR2Q9BXF3 1484 aa25.49■■□□□ 1.67
CACFD1-202ENST00000316948 MROH2BQ7Z745 1585 aa25.4■■□□□ 1.66
CACFD1-202ENST00000316948 NACADO15069 1562 aa25.37■■□□□ 1.65
CACFD1-202ENST00000316948 WIZO95785 1651 aa25.29■■□□□ 1.64
CACFD1-202ENST00000316948 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.2■■□□□ 1.62
CACFD1-202ENST00000316948 ACIN1Q9UKV3 1341 aaKnown RBP25.17■■□□□ 1.62
CACFD1-202ENST00000316948 NEUROD1Q13562 356 aa25.16■■□□□ 1.62
CACFD1-202ENST00000316948 CCER1Q8TC90 406 aaPredicted RBP25.14■■□□□ 1.61
CACFD1-202ENST00000316948 BAZ1AQ9NRL2 1556 aaPredicted RBP25.06■■□□□ 1.6
CACFD1-202ENST00000316948 GTF3C3Q9Y5Q9 886 aa25■■□□□ 1.59
CACFD1-202ENST00000316948 DIEXFQ68CQ4 756 aaKnown RBP24.97■■□□□ 1.59
CACFD1-202ENST00000316948 EIF4G1Q04637 1599 aaKnown RBP24.96■■□□□ 1.59
CACFD1-202ENST00000316948 CENPBP07199 599 aaPredicted RBP24.92■■□□□ 1.58
CACFD1-202ENST00000316948 TTBK1Q5TCY1 1321 aaPredicted RBP24.9■■□□□ 1.58
CACFD1-202ENST00000316948 ABCC8Q09428 1581 aa24.86■■□□□ 1.57
CACFD1-202ENST00000316948 TOP2AP11388 1531 aaKnown RBP24.8■■□□□ 1.56
CACFD1-202ENST00000316948 CCDC88BA6NC98 1476 aa24.8■■□□□ 1.56
CACFD1-202ENST00000316948 SMARCA4P51532 1647 aa24.76■■□□□ 1.55
CACFD1-202ENST00000316948 SMARCA2P51531 1590 aa24.72■■□□□ 1.55
CACFD1-202ENST00000316948 SOGA1O94964 1423 aa24.67■■□□□ 1.54
CACFD1-202ENST00000316948 UNC13AQ9UPW8 1703 aa24.64■■□□□ 1.54
CACFD1-202ENST00000316948 CEP162Q5TB80 1403 aa24.64■■□□□ 1.54
CACFD1-202ENST00000316948 MYT1Q01538 1121 aa24.63■■□□□ 1.53
CACFD1-202ENST00000316948 YTHDC1Q96MU7 727 aaKnown RBP24.62■■□□□ 1.53
CACFD1-202ENST00000316948 WRNQ14191 1432 aaPredicted RBP eCLIP24.59■■□□□ 1.53
CACFD1-202ENST00000316948 PABPN1Q86U42 306 aaKnown RBP eCLIP24.59■■□□□ 1.53
CACFD1-202ENST00000316948 RUSC2Q8N2Y8 1516 aa24.56■■□□□ 1.52
CACFD1-202ENST00000316948 ZNF316A6NFI3 1004 aaPredicted RBP24.54■■□□□ 1.52
CACFD1-202ENST00000316948 UBTFP17480 764 aaKnown RBP24.53■■□□□ 1.52
CACFD1-202ENST00000316948 TNIKQ9UKE5 1360 aa24.53■■□□□ 1.52
CACFD1-202ENST00000316948 CSRNP3Q8WYN3 585 aa24.53■■□□□ 1.52
CACFD1-202ENST00000316948 EEA1Q15075 1411 aa24.42■■□□□ 1.5
CACFD1-202ENST00000316948 MIER1Q8N108 512 aa24.37■■□□□ 1.49
CACFD1-202ENST00000316948 GOLGA3Q08378 1498 aa24.35■■□□□ 1.49
CACFD1-202ENST00000316948 BICRAQ9NZM4 1560 aa24.31■■□□□ 1.48
CACFD1-202ENST00000316948 HNRNPUL2Q1KMD3 747 aaKnown RBP24.28■■□□□ 1.48
CACFD1-202ENST00000316948 SYNJ1O43426 1573 aa24.22■■□□□ 1.47
CACFD1-202ENST00000316948 PEG3Q9GZU2 1588 aa24.19■■□□□ 1.46
CACFD1-202ENST00000316948 CEP164Q9UPV0 1460 aa24.17■■□□□ 1.46
CACFD1-202ENST00000316948 CLIP1P30622 1438 aa24.13■■□□□ 1.45
CACFD1-202ENST00000316948 RANGAP1P46060 587 aaPredicted RBP24.11■■□□□ 1.45
CACFD1-202ENST00000316948 KIF21BO75037 1637 aa24.11■■□□□ 1.45
CACFD1-202ENST00000316948 ATAD2BQ9ULI0 1458 aa24.08■■□□□ 1.45
CACFD1-202ENST00000316948 BAZ1BQ9UIG0 1483 aaKnown RBP24.04■■□□□ 1.44
CACFD1-202ENST00000316948 RAPGEF2Q9Y4G8 1499 aa24.04■■□□□ 1.44
CACFD1-202ENST00000316948 VPS8Q8N3P4 1428 aa24.02■■□□□ 1.44
CACFD1-202ENST00000316948 APLP2Q06481 763 aa23.99■■□□□ 1.43
CACFD1-202ENST00000316948 TOP2BQ02880 1626 aa23.84■■□□□ 1.41
CACFD1-202ENST00000316948 SUPT16HQ9Y5B9 1047 aaKnown RBP23.84■■□□□ 1.41
CACFD1-202ENST00000316948 BIVM-ERCC5R4GMW8 1640 aa23.72■■□□□ 1.39
CACFD1-202ENST00000316948 PRXQ9BXM0 1461 aa23.7■■□□□ 1.38
CACFD1-202ENST00000316948 KANK4Q5T7N3 995 aaPredicted RBP23.69■■□□□ 1.38
CACFD1-202ENST00000316948 CLSPNQ9HAW4 1339 aa23.69■■□□□ 1.38
CACFD1-202ENST00000316948 ARAP1Q96P48 1450 aa23.69■■□□□ 1.38
CACFD1-202ENST00000316948 ERICH3Q5RHP9 1530 aa23.67■■□□□ 1.38
CACFD1-202ENST00000316948 DHX57Q6P158 1386 aaKnown RBP23.65■■□□□ 1.38
CACFD1-202ENST00000316948 TSHZ2Q9NRE2 1034 aa23.64■■□□□ 1.38
CACFD1-202ENST00000316948 CUX1P39880 1505 aa23.61■■□□□ 1.37
CACFD1-202ENST00000316948 KIF27Q86VH2 1401 aa23.55■■□□□ 1.36
CACFD1-202ENST00000316948 NCAPD3P42695 1498 aa23.52■■□□□ 1.36
CACFD1-202ENST00000316948 KCNH8Q96L42 1107 aa23.52■■□□□ 1.35
CACFD1-202ENST00000316948 ANP32EQ9BTT0 268 aa23.51■■□□□ 1.35
CACFD1-202ENST00000316948 HMGXB3Q12766 1538 aa23.5■■□□□ 1.35
CACFD1-202ENST00000316948 BCANQ96GW7 911 aa23.5■■□□□ 1.35
CACFD1-202ENST00000316948 ITGAEP38570 1179 aa23.48■■□□□ 1.35
CACFD1-202ENST00000316948 RRBP1Q9P2E9 1410 aaKnown RBP23.48■■□□□ 1.35
CACFD1-202ENST00000316948 ARHGAP35Q9NRY4 1499 aa23.45■■□□□ 1.34
CACFD1-202ENST00000316948 CFTRP13569 1480 aa23.43■■□□□ 1.34
CACFD1-202ENST00000316948 CCNB3Q8WWL7 1395 aa23.42■■□□□ 1.34
CACFD1-202ENST00000316948 FKBP8Q14318 412 aa23.35■■□□□ 1.33
CACFD1-202ENST00000316948 CUX2O14529 1486 aa23.33■■□□□ 1.32
CACFD1-202ENST00000316948 IGF1RP08069 1367 aa23.3■■□□□ 1.32
CACFD1-202ENST00000316948 DDX10Q13206 875 aaKnown RBP23.27■■□□□ 1.32
CACFD1-202ENST00000316948 RAB3GAP2Q9H2M9 1393 aa23.27■■□□□ 1.32
CACFD1-202ENST00000316948 BCL11AQ9H165 835 aa23.23■■□□□ 1.31
CACFD1-202ENST00000316948 CARMIL1Q5VZK9 1371 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms