RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 NISCHQ9Y2I1 1504 aa42.7■■■■■ 4.43
CHCHD3-202ENST00000423635 ABCC9O60706 1549 aa38.95■■■■□ 3.83
CHCHD3-202ENST00000423635 CCDC180Q9P1Z9 1646 aa38.46■■■■□ 3.75
CHCHD3-202ENST00000423635 DNAJC5BQ9UF47 199 aa37.08■■■■□ 3.53
CHCHD3-202ENST00000423635 RB1CC1Q8TDY2 1594 aa36.87■■■■□ 3.49
CHCHD3-202ENST00000423635 NACADO15069 1562 aa36.53■■■■□ 3.44
CHCHD3-202ENST00000423635 DCAF8L2P0C7V8 631 aa36.23■■■■□ 3.39
CHCHD3-202ENST00000423635 PABPN1Q86U42 306 aaKnown RBP eCLIP36.23■■■■□ 3.39
CHCHD3-202ENST00000423635 UNC13AQ9UPW8 1703 aa35.97■■■■□ 3.35
CHCHD3-202ENST00000423635 MYO15BQ96JP2 1530 aa35.94■■■■□ 3.34
CHCHD3-202ENST00000423635 BICRAQ9NZM4 1560 aa35.83■■■■□ 3.33
CHCHD3-202ENST00000423635 SHROOM4Q9ULL8 1493 aa35.34■■■■□ 3.25
CHCHD3-202ENST00000423635 DCAF1Q9Y4B6 1507 aa35.27■■■■□ 3.24
CHCHD3-202ENST00000423635 ZCCHC6Q5VYS8 1495 aaKnown RBP35.26■■■■□ 3.24
CHCHD3-202ENST00000423635 CECR2Q9BXF3 1484 aa35.17■■■■□ 3.22
CHCHD3-202ENST00000423635 CC2D2AQ9P2K1 1620 aa35.16■■■■□ 3.22
CHCHD3-202ENST00000423635 EIF4G1Q04637 1599 aaKnown RBP34.98■■■■□ 3.19
CHCHD3-202ENST00000423635 SCRIBQ14160 1630 aa34.97■■■■□ 3.19
CHCHD3-202ENST00000423635 DNAJC5Q9H3Z4 198 aa34.43■■■■□ 3.1
CHCHD3-202ENST00000423635 CUX2O14529 1486 aa33.81■■■■□ 3
CHCHD3-202ENST00000423635 NCAPD3P42695 1498 aa33.79■■■■□ 3
CHCHD3-202ENST00000423635 ERCC6Q03468 1493 aa33.65■■■□□ 2.98
CHCHD3-202ENST00000423635 ATAD2BQ9ULI0 1458 aa33.58■■■□□ 2.97
CHCHD3-202ENST00000423635 SMARCA2P51531 1590 aa33.43■■■□□ 2.94
CHCHD3-202ENST00000423635 HMGXB3Q12766 1538 aa33.42■■■□□ 2.94
CHCHD3-202ENST00000423635 SMARCA4P51532 1647 aa33.36■■■□□ 2.93
CHCHD3-202ENST00000423635 NESP48681 1621 aa33.33■■■□□ 2.93
CHCHD3-202ENST00000423635 BAZ1BQ9UIG0 1483 aaKnown RBP33.18■■■□□ 2.9
CHCHD3-202ENST00000423635 BAZ1AQ9NRL2 1556 aaPredicted RBP33.15■■■□□ 2.9
CHCHD3-202ENST00000423635 PEG3Q9GZU2 1588 aa33.1■■■□□ 2.89
CHCHD3-202ENST00000423635 THOC2Q8NI27 1593 aaKnown RBP33.06■■■□□ 2.88
CHCHD3-202ENST00000423635 LAMC3Q9Y6N6 1575 aa33.04■■■□□ 2.88
CHCHD3-202ENST00000423635 PDS5BQ9NTI5 1447 aa32.9■■■□□ 2.86
CHCHD3-202ENST00000423635 MROH2BQ7Z745 1585 aa32.87■■■□□ 2.85
CHCHD3-202ENST00000423635 KIF21AQ7Z4S6 1674 aa32.81■■■□□ 2.84
CHCHD3-202ENST00000423635 CADPSQ9ULU8 1353 aa32.73■■■□□ 2.83
CHCHD3-202ENST00000423635 TRIM41Q8WV44 630 aa32.6■■■□□ 2.81
CHCHD3-202ENST00000423635 MRC2Q9UBG0 1479 aa32.6■■■□□ 2.81
CHCHD3-202ENST00000423635 WDR62O43379 1518 aa32.54■■■□□ 2.8
CHCHD3-202ENST00000423635 WIZO95785 1651 aa32.41■■■□□ 2.78
CHCHD3-202ENST00000423635 CEP164Q9UPV0 1460 aa32.36■■■□□ 2.77
CHCHD3-202ENST00000423635 FANCD2Q9BXW9 1451 aa32.3■■■□□ 2.76
CHCHD3-202ENST00000423635 OSCARQ8IYS5 282 aa32.26■■■□□ 2.75
CHCHD3-202ENST00000423635 CFTRP13569 1480 aa32.24■■■□□ 2.75
CHCHD3-202ENST00000423635 URB2Q14146 1524 aaKnown RBP32.07■■■□□ 2.72
CHCHD3-202ENST00000423635 RSF1Q96T23 1441 aaPredicted RBP32.05■■■□□ 2.72
CHCHD3-202ENST00000423635 TOP2AP11388 1531 aaKnown RBP31.99■■■□□ 2.71
CHCHD3-202ENST00000423635 IFT140Q96RY7 1462 aa31.77■■■□□ 2.68
CHCHD3-202ENST00000423635 RIMBP3CA6NJZ7 1639 aa31.77■■■□□ 2.68
CHCHD3-202ENST00000423635 RIMBP3BA6NNM3 1639 aa31.77■■■□□ 2.68
CHCHD3-202ENST00000423635 RIMBP3Q9UFD9 1639 aa31.77■■■□□ 2.68
CHCHD3-202ENST00000423635 ZNF608Q9ULD9 1512 aaPredicted RBP31.75■■■□□ 2.67
CHCHD3-202ENST00000423635 PRDM2Q13029 1718 aa31.74■■■□□ 2.67
CHCHD3-202ENST00000423635 CCDC88BA6NC98 1476 aa31.68■■■□□ 2.66
CHCHD3-202ENST00000423635 ARHGEF11O15085 1522 aa31.64■■■□□ 2.66
CHCHD3-202ENST00000423635 TOPBP1Q92547 1522 aa31.63■■■□□ 2.65
CHCHD3-202ENST00000423635 ABCC8Q09428 1581 aa31.58■■■□□ 2.65
CHCHD3-202ENST00000423635 CYB5RLQ6IPT4 315 aa31.49■■■□□ 2.63
CHCHD3-202ENST00000423635 EIF4G3O43432 1585 aaKnown RBP31.49■■■□□ 2.63
CHCHD3-202ENST00000423635 DNMBPQ6XZF7 1577 aa31.46■■■□□ 2.63
CHCHD3-202ENST00000423635 AQRO60306 1485 aaKnown RBP eCLIP31.42■■■□□ 2.62
CHCHD3-202ENST00000423635 TARBP1Q13395 1621 aaKnown RBP31.38■■■□□ 2.61
CHCHD3-202ENST00000423635 CHD1O14646 1710 aa31.32■■■□□ 2.6
CHCHD3-202ENST00000423635 ARAP1Q96P48 1450 aa31.3■■■□□ 2.6
CHCHD3-202ENST00000423635 FBLN2P98095 1184 aa31.29■■■□□ 2.6
CHCHD3-202ENST00000423635 POLA1P09884 1462 aaPredicted RBP31.28■■■□□ 2.6
CHCHD3-202ENST00000423635 TRHP20396 242 aaPredicted RBP31.26■■■□□ 2.6
CHCHD3-202ENST00000423635 RAD54L2Q9Y4B4 1467 aa31.18■■■□□ 2.58
CHCHD3-202ENST00000423635 SOGA1O94964 1423 aa31.17■■■□□ 2.58
CHCHD3-202ENST00000423635 TDRD9Q8NDG6 1382 aaKnown RBP31.16■■■□□ 2.58
CHCHD3-202ENST00000423635 WDR97A6NE52 1622 aa31.05■■■□□ 2.56
CHCHD3-202ENST00000423635 SNAPC4Q5SXM2 1469 aa31.04■■■□□ 2.56
CHCHD3-202ENST00000423635 CHMP7Q8WUX9 453 aaPredicted RBP31.03■■■□□ 2.56
CHCHD3-202ENST00000423635 CLASP1Q7Z460 1538 aa31.03■■■□□ 2.56
CHCHD3-202ENST00000423635 FGD5Q6ZNL6 1462 aa31■■■□□ 2.55
CHCHD3-202ENST00000423635 MAGI1Q96QZ7 1491 aaPredicted RBP30.98■■■□□ 2.55
CHCHD3-202ENST00000423635 SYNJ1O43426 1573 aa30.95■■■□□ 2.54
CHCHD3-202ENST00000423635 GRIN2BQ13224 1484 aa30.93■■■□□ 2.54
CHCHD3-202ENST00000423635 CUX1P39880 1505 aa30.89■■■□□ 2.54
CHCHD3-202ENST00000423635 SYNJ2O15056 1496 aa30.88■■■□□ 2.53
CHCHD3-202ENST00000423635 GAPVD1Q14C86 1478 aa30.75■■■□□ 2.51
CHCHD3-202ENST00000423635 AEBP2Q6ZN18 517 aaPredicted RBP30.71■■■□□ 2.51
CHCHD3-202ENST00000423635 PBRM1Q86U86 1689 aa30.67■■■□□ 2.5
CHCHD3-202ENST00000423635 ABCA10Q8WWZ4 1543 aa30.66■■■□□ 2.5
CHCHD3-202ENST00000423635 ABCA5Q8WWZ7 1642 aa30.6■■■□□ 2.49
CHCHD3-202ENST00000423635 GRIN2AQ12879 1464 aa30.52■■■□□ 2.48
CHCHD3-202ENST00000423635 ERCC6L2Q5T890 1561 aa30.49■■■□□ 2.47
CHCHD3-202ENST00000423635 NUP160Q12769 1436 aa30.47■■■□□ 2.47
CHCHD3-202ENST00000423635 WRNQ14191 1432 aaPredicted RBP eCLIP30.44■■■□□ 2.46
CHCHD3-202ENST00000423635 CEP170Q5SW79 1584 aa30.41■■■□□ 2.46
CHCHD3-202ENST00000423635 ADAMTS12P58397 1594 aa30.39■■■□□ 2.46
CHCHD3-202ENST00000423635 FHAD1B1AJZ9 1412 aa30.37■■■□□ 2.45
CHCHD3-202ENST00000423635 SHROOM2Q13796 1616 aa30.35■■■□□ 2.45
CHCHD3-202ENST00000423635 TOP2BQ02880 1626 aa30.27■■■□□ 2.44
CHCHD3-202ENST00000423635 ERICH3Q5RHP9 1530 aa30.26■■■□□ 2.43
CHCHD3-202ENST00000423635 BIVM-ERCC5R4GMW8 1640 aa30.25■■■□□ 2.43
CHCHD3-202ENST00000423635 SUPT5HO00267 1087 aaKnown RBP30.23■■■□□ 2.43
CHCHD3-202ENST00000423635 JPH4Q96JJ6 628 aa30.21■■■□□ 2.43
CHCHD3-202ENST00000423635 PRG4Q92954 1404 aaPredicted RBP30.19■■■□□ 2.42
CHCHD3-202ENST00000423635 KIF13AQ9H1H9 1805 aa30.16■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms