RNA–Protein interactions for RNA: ENST00000541097.5

LDHA-219, Transcript of lactate dehydrogenase A, humanhuman

TSL 3

Gene LDHA, Length 582 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDHA-219ENST00000541097 AEBP2Q6ZN18 517 aaPredicted RBP17.8■□□□□ 0.44
LDHA-219ENST00000541097 CHIC1Q5VXU3 224 aa16.9■□□□□ 0.3
LDHA-219ENST00000541097 NISCHQ9Y2I1 1504 aa16.73■□□□□ 0.27
LDHA-219ENST00000541097 SENP3Q9H4L4 574 aaPredicted RBP15.32■□□□□ 0.04
LDHA-219ENST00000541097 PHF23Q9BUL5 403 aaPredicted RBP15.05■□□□□ -0
LDHA-219ENST00000541097 CCDC180Q9P1Z9 1646 aa14.8□□□□□ -0.04
LDHA-219ENST00000541097 ABCC9O60706 1549 aa14.71□□□□□ -0.06
LDHA-219ENST00000541097 FOXD1Q16676 465 aa14.21□□□□□ -0.13
LDHA-219ENST00000541097 DCAF8L2P0C7V8 631 aa14.07□□□□□ -0.16
LDHA-219ENST00000541097 RB1CC1Q8TDY2 1594 aa14.06□□□□□ -0.16
LDHA-219ENST00000541097 NACADO15069 1562 aa14.05□□□□□ -0.16
LDHA-219ENST00000541097 MYO15BQ96JP2 1530 aa13.99□□□□□ -0.17
LDHA-219ENST00000541097 ZCCHC6Q5VYS8 1495 aaKnown RBP13.87□□□□□ -0.19
LDHA-219ENST00000541097 DCAF1Q9Y4B6 1507 aa13.86□□□□□ -0.19
LDHA-219ENST00000541097 PABPN1Q86U42 306 aaKnown RBP eCLIP13.8□□□□□ -0.2
LDHA-219ENST00000541097 DNAJC5BQ9UF47 199 aa13.77□□□□□ -0.21
LDHA-219ENST00000541097 BICRAQ9NZM4 1560 aa13.66□□□□□ -0.22
LDHA-219ENST00000541097 UNC13AQ9UPW8 1703 aa13.58□□□□□ -0.24
LDHA-219ENST00000541097 SHROOM4Q9ULL8 1493 aa13.55□□□□□ -0.24
LDHA-219ENST00000541097 PLPPR3Q6T4P5 718 aa13.51□□□□□ -0.25
LDHA-219ENST00000541097 SCRIBQ14160 1630 aa13.48□□□□□ -0.25
LDHA-219ENST00000541097 MSH5O43196 834 aa13.42□□□□□ -0.26
LDHA-219ENST00000541097 PIAS4Q8N2W9 510 aaPredicted RBP13.32□□□□□ -0.28
LDHA-219ENST00000541097 EIF4G1Q04637 1599 aaKnown RBP13.3□□□□□ -0.28
LDHA-219ENST00000541097 CECR2Q9BXF3 1484 aa13.26□□□□□ -0.29
LDHA-219ENST00000541097 CC2D2AQ9P2K1 1620 aa13.26□□□□□ -0.29
LDHA-219ENST00000541097 ADRA2BP18089 450 aa13.17□□□□□ -0.3
LDHA-219ENST00000541097 PPP6R1Q9UPN7 881 aa13.17□□□□□ -0.3
LDHA-219ENST00000541097 POTEDQ86YR6 584 aa13.16□□□□□ -0.3
LDHA-219ENST00000541097 NCAPD3P42695 1498 aa13.06□□□□□ -0.32
LDHA-219ENST00000541097 ATAD2BQ9ULI0 1458 aa13□□□□□ -0.33
LDHA-219ENST00000541097 BAZ1AQ9NRL2 1556 aaPredicted RBP12.94□□□□□ -0.34
LDHA-219ENST00000541097 SMARCA4P51532 1647 aa12.92□□□□□ -0.34
LDHA-219ENST00000541097 SMARCA2P51531 1590 aa12.92□□□□□ -0.34
LDHA-219ENST00000541097 MROH2BQ7Z745 1585 aa12.87□□□□□ -0.35
LDHA-219ENST00000541097 HMGXB3Q12766 1538 aa12.87□□□□□ -0.35
LDHA-219ENST00000541097 PEG3Q9GZU2 1588 aa12.86□□□□□ -0.35
LDHA-219ENST00000541097 BAZ1BQ9UIG0 1483 aaKnown RBP12.82□□□□□ -0.36
LDHA-219ENST00000541097 RSF1Q96T23 1441 aaPredicted RBP12.74□□□□□ -0.37
LDHA-219ENST00000541097 NESP48681 1621 aa12.69□□□□□ -0.38
LDHA-219ENST00000541097 ERCC6Q03468 1493 aa12.67□□□□□ -0.38
LDHA-219ENST00000541097 CADPSQ9ULU8 1353 aa12.67□□□□□ -0.38
LDHA-219ENST00000541097 CUX2O14529 1486 aa12.64□□□□□ -0.39
LDHA-219ENST00000541097 WIZO95785 1651 aa12.64□□□□□ -0.39
LDHA-219ENST00000541097 PDS5BQ9NTI5 1447 aa12.62□□□□□ -0.39
LDHA-219ENST00000541097 LAMC3Q9Y6N6 1575 aa12.62□□□□□ -0.39
LDHA-219ENST00000541097 CFTRP13569 1480 aa12.54□□□□□ -0.4
LDHA-219ENST00000541097 DNAJC5Q9H3Z4 198 aa12.54□□□□□ -0.4
LDHA-219ENST00000541097 TOP2AP11388 1531 aaKnown RBP12.53□□□□□ -0.4
LDHA-219ENST00000541097 CCDC88BA6NC98 1476 aa12.46□□□□□ -0.41
LDHA-219ENST00000541097 THOC2Q8NI27 1593 aaKnown RBP12.45□□□□□ -0.42
LDHA-219ENST00000541097 FANCD2Q9BXW9 1451 aa12.45□□□□□ -0.42
LDHA-219ENST00000541097 MRC2Q9UBG0 1479 aa12.44□□□□□ -0.42
LDHA-219ENST00000541097 CEP164Q9UPV0 1460 aa12.41□□□□□ -0.42
LDHA-219ENST00000541097 KIF21AQ7Z4S6 1674 aa12.39□□□□□ -0.43
LDHA-219ENST00000541097 WDR62O43379 1518 aa12.39□□□□□ -0.43
LDHA-219ENST00000541097 URB2Q14146 1524 aaKnown RBP12.32□□□□□ -0.44
LDHA-219ENST00000541097 SUPT5HO00267 1087 aaKnown RBP12.28□□□□□ -0.44
LDHA-219ENST00000541097 ABCC8Q09428 1581 aa12.26□□□□□ -0.45
LDHA-219ENST00000541097 TOPBP1Q92547 1522 aa12.21□□□□□ -0.45
LDHA-219ENST00000541097 IFT140Q96RY7 1462 aa12.2□□□□□ -0.46
LDHA-219ENST00000541097 OSCARQ8IYS5 282 aa12.19□□□□□ -0.46
LDHA-219ENST00000541097 SCAF1Q9H7N4 1312 aaKnown RBP12.17□□□□□ -0.46
LDHA-219ENST00000541097 DNMBPQ6XZF7 1577 aa12.15□□□□□ -0.46
LDHA-219ENST00000541097 ZNF608Q9ULD9 1512 aaPredicted RBP12.15□□□□□ -0.46
LDHA-219ENST00000541097 PRDM2Q13029 1718 aa12.14□□□□□ -0.47
LDHA-219ENST00000541097 POLA1P09884 1462 aaPredicted RBP12.12□□□□□ -0.47
LDHA-219ENST00000541097 SOGA1O94964 1423 aa12.11□□□□□ -0.47
LDHA-219ENST00000541097 DMRT2Q9Y5R5 561 aa12.1□□□□□ -0.47
LDHA-219ENST00000541097 MAPK8IP2Q13387 824 aaPredicted RBP12.09□□□□□ -0.47
LDHA-219ENST00000541097 AQRO60306 1485 aaKnown RBP eCLIP12.08□□□□□ -0.471e-8■■■■□ 22.9
LDHA-219ENST00000541097 CUX1P39880 1505 aa12.07□□□□□ -0.48
LDHA-219ENST00000541097 TARBP1Q13395 1621 aaKnown RBP12.07□□□□□ -0.48
LDHA-219ENST00000541097 RAD54L2Q9Y4B4 1467 aa12.07□□□□□ -0.48
LDHA-219ENST00000541097 TDRD9Q8NDG6 1382 aaKnown RBP12.06□□□□□ -0.48
LDHA-219ENST00000541097 FGD5Q6ZNL6 1462 aa12.04□□□□□ -0.48
LDHA-219ENST00000541097 EIF4G3O43432 1585 aaKnown RBP11.98□□□□□ -0.49
LDHA-219ENST00000541097 WRNQ14191 1432 aaPredicted RBP eCLIP11.97□□□□□ -0.49
LDHA-219ENST00000541097 FBLN2P98095 1184 aa11.97□□□□□ -0.49
LDHA-219ENST00000541097 CHMP7Q8WUX9 453 aaPredicted RBP11.96□□□□□ -0.49
LDHA-219ENST00000541097 WDR97A6NE52 1622 aa11.96□□□□□ -0.5
LDHA-219ENST00000541097 ABCA10Q8WWZ4 1543 aa11.96□□□□□ -0.5
LDHA-219ENST00000541097 GRIN2BQ13224 1484 aa11.95□□□□□ -0.5
LDHA-219ENST00000541097 TRIM41Q8WV44 630 aa11.95□□□□□ -0.5
LDHA-219ENST00000541097 GAPVD1Q14C86 1478 aa11.94□□□□□ -0.5
LDHA-219ENST00000541097 MAGI1Q96QZ7 1491 aaPredicted RBP11.92□□□□□ -0.5
LDHA-219ENST00000541097 SNAPC4Q5SXM2 1469 aa11.91□□□□□ -0.5
LDHA-219ENST00000541097 TOP2BQ02880 1626 aa11.89□□□□□ -0.51
LDHA-219ENST00000541097 SYNJ2O15056 1496 aa11.89□□□□□ -0.51
LDHA-219ENST00000541097 ARHGEF11O15085 1522 aa11.86□□□□□ -0.51
LDHA-219ENST00000541097 CYB5RLQ6IPT4 315 aa11.86□□□□□ -0.51
LDHA-219ENST00000541097 SYNJ1O43426 1573 aa11.86□□□□□ -0.51
LDHA-219ENST00000541097 BIVM-ERCC5R4GMW8 1640 aa11.85□□□□□ -0.51
LDHA-219ENST00000541097 ABCA5Q8WWZ7 1642 aa11.82□□□□□ -0.52
LDHA-219ENST00000541097 RIMBP3CA6NJZ7 1639 aa11.82□□□□□ -0.52
LDHA-219ENST00000541097 RIMBP3BA6NNM3 1639 aa11.82□□□□□ -0.52
LDHA-219ENST00000541097 RIMBP3Q9UFD9 1639 aa11.82□□□□□ -0.52
LDHA-219ENST00000541097 FHAD1B1AJZ9 1412 aa11.81□□□□□ -0.52
LDHA-219ENST00000541097 PPP4R3CPQ6ZMV5 832 aa11.8□□□□□ -0.52
LDHA-219ENST00000541097 CLASP1Q7Z460 1538 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms