RNA–Protein interactions for RNA: ENST00000534176.1

UBXN1-217, Transcript of UBX domain protein 1, humanhuman

TSL 3

Gene UBXN1, Length 943 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN1-217ENST00000534176 NISCHQ9Y2I1 1504 aa37.78■■■■□ 3.64
UBXN1-217ENST00000534176 CCDC180Q9P1Z9 1646 aa33.77■■■■□ 3
UBXN1-217ENST00000534176 ABCC9O60706 1549 aa33.06■■■□□ 2.88
UBXN1-217ENST00000534176 RB1CC1Q8TDY2 1594 aa31.89■■■□□ 2.7
UBXN1-217ENST00000534176 NACADO15069 1562 aa31.82■■■□□ 2.68
UBXN1-217ENST00000534176 MYO15BQ96JP2 1530 aa31.65■■■□□ 2.66
UBXN1-217ENST00000534176 DCAF8L2P0C7V8 631 aa31.55■■■□□ 2.64
UBXN1-217ENST00000534176 ZCCHC6Q5VYS8 1495 aaKnown RBP31.43■■■□□ 2.62
UBXN1-217ENST00000534176 DCAF1Q9Y4B6 1507 aa31.38■■■□□ 2.61
UBXN1-217ENST00000534176 UNC13AQ9UPW8 1703 aa30.98■■■□□ 2.55
UBXN1-217ENST00000534176 PABPN1Q86U42 306 aaKnown RBP eCLIP30.81■■■□□ 2.52
UBXN1-217ENST00000534176 BICRAQ9NZM4 1560 aa30.77■■■□□ 2.52
UBXN1-217ENST00000534176 SHROOM4Q9ULL8 1493 aa30.74■■■□□ 2.51
UBXN1-217ENST00000534176 SCRIBQ14160 1630 aa30.62■■■□□ 2.49
UBXN1-217ENST00000534176 DNAJC5BQ9UF47 199 aa30.43■■■□□ 2.46
UBXN1-217ENST00000534176 EIF4G1Q04637 1599 aaKnown RBP30.05■■■□□ 2.4
UBXN1-217ENST00000534176 CC2D2AQ9P2K1 1620 aa29.95■■■□□ 2.38
UBXN1-217ENST00000534176 CECR2Q9BXF3 1484 aa29.81■■■□□ 2.36
UBXN1-217ENST00000534176 BAZ1AQ9NRL2 1556 aaPredicted RBP29.37■■■□□ 2.29
UBXN1-217ENST00000534176 SMARCA4P51532 1647 aa29.34■■■□□ 2.29
UBXN1-217ENST00000534176 NCAPD3P42695 1498 aa29.33■■■□□ 2.29
UBXN1-217ENST00000534176 SMARCA2P51531 1590 aa29.3■■■□□ 2.28
UBXN1-217ENST00000534176 ATAD2BQ9ULI0 1458 aa29.25■■■□□ 2.27
UBXN1-217ENST00000534176 HMGXB3Q12766 1538 aa29.19■■■□□ 2.26
UBXN1-217ENST00000534176 PEG3Q9GZU2 1588 aa29.15■■■□□ 2.26
UBXN1-217ENST00000534176 BAZ1BQ9UIG0 1483 aaKnown RBP29.03■■■□□ 2.24
UBXN1-217ENST00000534176 MROH2BQ7Z745 1585 aa29.02■■■□□ 2.24
UBXN1-217ENST00000534176 WIZO95785 1651 aa28.68■■■□□ 2.18
UBXN1-217ENST00000534176 RSF1Q96T23 1441 aaPredicted RBP28.66■■■□□ 2.18
UBXN1-217ENST00000534176 ERCC6Q03468 1493 aa28.64■■■□□ 2.17
UBXN1-217ENST00000534176 LAMC3Q9Y6N6 1575 aa28.62■■■□□ 2.17
UBXN1-217ENST00000534176 NESP48681 1621 aa28.5■■■□□ 2.15
UBXN1-217ENST00000534176 CUX2O14529 1486 aa28.49■■■□□ 2.15
UBXN1-217ENST00000534176 TOP2AP11388 1531 aaKnown RBP28.48■■■□□ 2.15
UBXN1-217ENST00000534176 PDS5BQ9NTI5 1447 aa28.45■■■□□ 2.15
UBXN1-217ENST00000534176 CADPSQ9ULU8 1353 aa28.45■■■□□ 2.14
UBXN1-217ENST00000534176 CFTRP13569 1480 aa28.23■■■□□ 2.11
UBXN1-217ENST00000534176 THOC2Q8NI27 1593 aaKnown RBP28.21■■■□□ 2.11
UBXN1-217ENST00000534176 KIF21AQ7Z4S6 1674 aa28.2■■■□□ 2.11
UBXN1-217ENST00000534176 CEP164Q9UPV0 1460 aa28.11■■■□□ 2.09
UBXN1-217ENST00000534176 MRC2Q9UBG0 1479 aa28.1■■■□□ 2.09
UBXN1-217ENST00000534176 CCDC88BA6NC98 1476 aa28.08■■■□□ 2.09
UBXN1-217ENST00000534176 FANCD2Q9BXW9 1451 aa28.08■■■□□ 2.09
UBXN1-217ENST00000534176 WDR62O43379 1518 aa28.02■■■□□ 2.08
UBXN1-217ENST00000534176 PRDM2Q13029 1718 aa28■■■□□ 2.07
UBXN1-217ENST00000534176 DNAJC5Q9H3Z4 198 aa27.77■■■□□ 2.04
UBXN1-217ENST00000534176 ABCC8Q09428 1581 aa27.76■■■□□ 2.03
UBXN1-217ENST00000534176 URB2Q14146 1524 aaKnown RBP27.75■■■□□ 2.03
UBXN1-217ENST00000534176 SUPT5HO00267 1087 aaKnown RBP27.69■■■□□ 2.02
UBXN1-217ENST00000534176 TOPBP1Q92547 1522 aa27.59■■■□□ 2.01
UBXN1-217ENST00000534176 DNMBPQ6XZF7 1577 aa27.59■■■□□ 2.01
UBXN1-217ENST00000534176 IFT140Q96RY7 1462 aa27.55■■■□□ 2
UBXN1-217ENST00000534176 POLA1P09884 1462 aaPredicted RBP27.34■■□□□ 1.97
UBXN1-217ENST00000534176 TARBP1Q13395 1621 aaKnown RBP27.3■■□□□ 1.96
UBXN1-217ENST00000534176 ZNF608Q9ULD9 1512 aaPredicted RBP27.28■■□□□ 1.96
UBXN1-217ENST00000534176 WDR97A6NE52 1622 aa27.27■■□□□ 1.96
UBXN1-217ENST00000534176 CUX1P39880 1505 aa27.26■■□□□ 1.95
UBXN1-217ENST00000534176 SOGA1O94964 1423 aa27.25■■□□□ 1.95
UBXN1-217ENST00000534176 EIF4G3O43432 1585 aaKnown RBP27.24■■□□□ 1.95
UBXN1-217ENST00000534176 OSCARQ8IYS5 282 aa27.23■■□□□ 1.95
UBXN1-217ENST00000534176 FGD5Q6ZNL6 1462 aa27.23■■□□□ 1.95
UBXN1-217ENST00000534176 RAD54L2Q9Y4B4 1467 aa27.14■■□□□ 1.94
UBXN1-217ENST00000534176 AQRO60306 1485 aaKnown RBP eCLIP27.13■■□□□ 1.938e-8■■■■□ 24
UBXN1-217ENST00000534176 WRNQ14191 1432 aaPredicted RBP eCLIP27.08■■□□□ 1.93
UBXN1-217ENST00000534176 TDRD9Q8NDG6 1382 aaKnown RBP27.05■■□□□ 1.92
UBXN1-217ENST00000534176 TOP2BQ02880 1626 aa27.05■■□□□ 1.92
UBXN1-217ENST00000534176 BIVM-ERCC5R4GMW8 1640 aa27.03■■□□□ 1.92
UBXN1-217ENST00000534176 ABCA10Q8WWZ4 1543 aa27.02■■□□□ 1.92
UBXN1-217ENST00000534176 GRIN2BQ13224 1484 aa27■■□□□ 1.91
UBXN1-217ENST00000534176 MAGI1Q96QZ7 1491 aaPredicted RBP26.99■■□□□ 1.91
UBXN1-217ENST00000534176 GAPVD1Q14C86 1478 aa26.94■■□□□ 1.9
UBXN1-217ENST00000534176 SYNJ1O43426 1573 aa26.92■■□□□ 1.9
UBXN1-217ENST00000534176 SNAPC4Q5SXM2 1469 aa26.91■■□□□ 1.9
UBXN1-217ENST00000534176 CHD1O14646 1710 aa26.89■■□□□ 1.9
UBXN1-217ENST00000534176 ABCA5Q8WWZ7 1642 aa26.89■■□□□ 1.9
UBXN1-217ENST00000534176 FBLN2P98095 1184 aa26.88■■□□□ 1.89
UBXN1-217ENST00000534176 SYNJ2O15056 1496 aa26.86■■□□□ 1.89
UBXN1-217ENST00000534176 PBRM1Q86U86 1689 aa26.85■■□□□ 1.89
UBXN1-217ENST00000534176 CHMP7Q8WUX9 453 aaPredicted RBP26.85■■□□□ 1.89
UBXN1-217ENST00000534176 ERICH3Q5RHP9 1530 aa26.74■■□□□ 1.87
UBXN1-217ENST00000534176 ARHGEF11O15085 1522 aa26.71■■□□□ 1.87
UBXN1-217ENST00000534176 RIMBP3CA6NJZ7 1639 aa26.7■■□□□ 1.86
UBXN1-217ENST00000534176 RIMBP3BA6NNM3 1639 aa26.7■■□□□ 1.86
UBXN1-217ENST00000534176 RIMBP3Q9UFD9 1639 aa26.7■■□□□ 1.86
UBXN1-217ENST00000534176 FHAD1B1AJZ9 1412 aa26.66■■□□□ 1.86
UBXN1-217ENST00000534176 TRIM41Q8WV44 630 aa26.66■■□□□ 1.86
UBXN1-217ENST00000534176 CLASP1Q7Z460 1538 aa26.65■■□□□ 1.86
UBXN1-217ENST00000534176 ADAMTS12P58397 1594 aa26.64■■□□□ 1.86
UBXN1-217ENST00000534176 GRIN2AQ12879 1464 aa26.62■■□□□ 1.85
UBXN1-217ENST00000534176 KIF27Q86VH2 1401 aa26.58■■□□□ 1.85
UBXN1-217ENST00000534176 NUP160Q12769 1436 aa26.52■■□□□ 1.84
UBXN1-217ENST00000534176 CUL7Q14999 1698 aa26.45■■□□□ 1.82
UBXN1-217ENST00000534176 CYB5RLQ6IPT4 315 aa26.45■■□□□ 1.82
UBXN1-217ENST00000534176 ARAP1Q96P48 1450 aa26.44■■□□□ 1.82
UBXN1-217ENST00000534176 CEP170Q5SW79 1584 aa26.42■■□□□ 1.82
UBXN1-217ENST00000534176 IGF1RP08069 1367 aa26.42■■□□□ 1.82
UBXN1-217ENST00000534176 SHROOM2Q13796 1616 aa26.33■■□□□ 1.81
UBXN1-217ENST00000534176 CARMIL1Q5VZK9 1371 aa26.29■■□□□ 1.8
UBXN1-217ENST00000534176 RUSC2Q8N2Y8 1516 aa26.26■■□□□ 1.79
UBXN1-217ENST00000534176 KIAA0586Q9BVV6 1533 aa26.25■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms