RNA–Protein interactions for RNA: ENST00000339436.11

SRSF3-201, Transcript of serine and arginine rich splicing factor 3, humanhuman

TSL 2

Gene SRSF3, Length 1,518 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRSF3-201ENST00000339436 NISCHQ9Y2I1 1504 aa31.13■■■□□ 2.57
SRSF3-201ENST00000339436 CCDC180Q9P1Z9 1646 aa27.72■■■□□ 2.03
SRSF3-201ENST00000339436 ABCC9O60706 1549 aa26.81■■□□□ 1.88
SRSF3-201ENST00000339436 ZCCHC6Q5VYS8 1495 aaKnown RBP26.01■■□□□ 1.75
SRSF3-201ENST00000339436 NACADO15069 1562 aa25.94■■□□□ 1.74
SRSF3-201ENST00000339436 RB1CC1Q8TDY2 1594 aa25.93■■□□□ 1.74
SRSF3-201ENST00000339436 MYO15BQ96JP2 1530 aa25.85■■□□□ 1.73
SRSF3-201ENST00000339436 DCAF1Q9Y4B6 1507 aa25.8■■□□□ 1.72
SRSF3-201ENST00000339436 DCAF8L2P0C7V8 631 aa25.75■■□□□ 1.71
SRSF3-201ENST00000339436 UNC13AQ9UPW8 1703 aa25.47■■□□□ 1.67
SRSF3-201ENST00000339436 SCRIBQ14160 1630 aa25.24■■□□□ 1.63
SRSF3-201ENST00000339436 BICRAQ9NZM4 1560 aa25.16■■□□□ 1.62
SRSF3-201ENST00000339436 PABPN1Q86U42 306 aaKnown RBP eCLIP25■■□□□ 1.59
SRSF3-201ENST00000339436 SHROOM4Q9ULL8 1493 aa24.92■■□□□ 1.58
SRSF3-201ENST00000339436 EIF4G1Q04637 1599 aaKnown RBP24.47■■□□□ 1.51
SRSF3-201ENST00000339436 DNAJC5BQ9UF47 199 aa24.37■■□□□ 1.49
SRSF3-201ENST00000339436 CC2D2AQ9P2K1 1620 aa24.33■■□□□ 1.49
SRSF3-201ENST00000339436 CECR2Q9BXF3 1484 aa24.2■■□□□ 1.47
SRSF3-201ENST00000339436 SMARCA4P51532 1647 aa24.17■■□□□ 1.46
SRSF3-201ENST00000339436 BAZ1AQ9NRL2 1556 aaPredicted RBP24.14■■□□□ 1.46
SRSF3-201ENST00000339436 MROH2BQ7Z745 1585 aa23.99■■□□□ 1.43
SRSF3-201ENST00000339436 SMARCA2P51531 1590 aa23.95■■□□□ 1.42
SRSF3-201ENST00000339436 PEG3Q9GZU2 1588 aa23.94■■□□□ 1.42
SRSF3-201ENST00000339436 ATAD2BQ9ULI0 1458 aa23.94■■□□□ 1.42
SRSF3-201ENST00000339436 NCAPD3P42695 1498 aa23.88■■□□□ 1.41
SRSF3-201ENST00000339436 HMGXB3Q12766 1538 aa23.86■■□□□ 1.41
SRSF3-201ENST00000339436 WIZO95785 1651 aa23.78■■□□□ 1.4
SRSF3-201ENST00000339436 BAZ1BQ9UIG0 1483 aaKnown RBP23.76■■□□□ 1.39
SRSF3-201ENST00000339436 RSF1Q96T23 1441 aaPredicted RBP23.74■■□□□ 1.39
SRSF3-201ENST00000339436 TOP2AP11388 1531 aaKnown RBP23.54■■□□□ 1.36
SRSF3-201ENST00000339436 LAMC3Q9Y6N6 1575 aa23.29■■□□□ 1.32
SRSF3-201ENST00000339436 NESP48681 1621 aa23.27■■□□□ 1.32
SRSF3-201ENST00000339436 CCDC88BA6NC98 1476 aa23.19■■□□□ 1.3
SRSF3-201ENST00000339436 CADPSQ9ULU8 1353 aa23.16■■□□□ 1.3
SRSF3-201ENST00000339436 SUPT5HO00267 1087 aaKnown RBP23.16■■□□□ 1.3
SRSF3-201ENST00000339436 PRDM2Q13029 1718 aa23.13■■□□□ 1.29
SRSF3-201ENST00000339436 KIF21AQ7Z4S6 1674 aa23.11■■□□□ 1.29
SRSF3-201ENST00000339436 CFTRP13569 1480 aa23.1■■□□□ 1.29
SRSF3-201ENST00000339436 ERCC6Q03468 1493 aa23.1■■□□□ 1.29
SRSF3-201ENST00000339436 PDS5BQ9NTI5 1447 aa23.04■■□□□ 1.28
SRSF3-201ENST00000339436 THOC2Q8NI27 1593 aaKnown RBP22.98■■□□□ 1.27
SRSF3-201ENST00000339436 FANCD2Q9BXW9 1451 aa22.94■■□□□ 1.26
SRSF3-201ENST00000339436 CEP164Q9UPV0 1460 aa22.92■■□□□ 1.26
SRSF3-201ENST00000339436 MRC2Q9UBG0 1479 aa22.84■■□□□ 1.25
SRSF3-201ENST00000339436 CUX2O14529 1486 aa22.83■■□□□ 1.25
SRSF3-201ENST00000339436 WDR62O43379 1518 aa22.81■■□□□ 1.24
SRSF3-201ENST00000339436 URB2Q14146 1524 aaKnown RBP22.72■■□□□ 1.23
SRSF3-201ENST00000339436 DNMBPQ6XZF7 1577 aa22.63■■□□□ 1.21
SRSF3-201ENST00000339436 TOPBP1Q92547 1522 aa22.61■■□□□ 1.21
SRSF3-201ENST00000339436 ABCC8Q09428 1581 aa22.6■■□□□ 1.21
SRSF3-201ENST00000339436 CUX1P39880 1505 aa22.52■■□□□ 1.19
SRSF3-201ENST00000339436 POLA1P09884 1462 aaPredicted RBP22.43■■□□□ 1.18
SRSF3-201ENST00000339436 BIVM-ERCC5R4GMW8 1640 aa22.42■■□□□ 1.18
SRSF3-201ENST00000339436 IFT140Q96RY7 1462 aa22.41■■□□□ 1.18
SRSF3-201ENST00000339436 FGD5Q6ZNL6 1462 aa22.4■■□□□ 1.18
SRSF3-201ENST00000339436 SYNJ1O43426 1573 aa22.4■■□□□ 1.18
SRSF3-201ENST00000339436 TARBP1Q13395 1621 aaKnown RBP22.4■■□□□ 1.18
SRSF3-201ENST00000339436 WRNQ14191 1432 aaPredicted RBP eCLIP22.39■■□□□ 1.17
SRSF3-201ENST00000339436 TOP2BQ02880 1626 aa22.39■■□□□ 1.17
SRSF3-201ENST00000339436 WDR97A6NE52 1622 aa22.32■■□□□ 1.16
SRSF3-201ENST00000339436 EIF4G3O43432 1585 aaKnown RBP22.3■■□□□ 1.16
SRSF3-201ENST00000339436 ZNF608Q9ULD9 1512 aaPredicted RBP22.3■■□□□ 1.16
SRSF3-201ENST00000339436 RAD54L2Q9Y4B4 1467 aa22.3■■□□□ 1.16
SRSF3-201ENST00000339436 SOGA1O94964 1423 aa22.27■■□□□ 1.16
SRSF3-201ENST00000339436 ABCA10Q8WWZ4 1543 aa22.19■■□□□ 1.14
SRSF3-201ENST00000339436 ABCA5Q8WWZ7 1642 aa22.16■■□□□ 1.14
SRSF3-201ENST00000339436 AQRO60306 1485 aaKnown RBP eCLIP22.15■■□□□ 1.141e-8■■■□□ 18.9
SRSF3-201ENST00000339436 PBRM1Q86U86 1689 aa22.13■■□□□ 1.13
SRSF3-201ENST00000339436 TDRD9Q8NDG6 1382 aaKnown RBP22.11■■□□□ 1.13
SRSF3-201ENST00000339436 GAPVD1Q14C86 1478 aa22.06■■□□□ 1.12
SRSF3-201ENST00000339436 GRIN2BQ13224 1484 aa22.04■■□□□ 1.12
SRSF3-201ENST00000339436 CHD1O14646 1710 aa22.01■■□□□ 1.11
SRSF3-201ENST00000339436 SNAPC4Q5SXM2 1469 aa22.01■■□□□ 1.11
SRSF3-201ENST00000339436 MAGI1Q96QZ7 1491 aaPredicted RBP21.99■■□□□ 1.11
SRSF3-201ENST00000339436 ERICH3Q5RHP9 1530 aa21.95■■□□□ 1.1
SRSF3-201ENST00000339436 ADAMTS12P58397 1594 aa21.93■■□□□ 1.1
SRSF3-201ENST00000339436 KIF27Q86VH2 1401 aa21.9■■□□□ 1.1
SRSF3-201ENST00000339436 SYNJ2O15056 1496 aa21.89■■□□□ 1.09
SRSF3-201ENST00000339436 TRIM41Q8WV44 630 aa21.87■■□□□ 1.09
SRSF3-201ENST00000339436 CUL7Q14999 1698 aa21.83■■□□□ 1.08
SRSF3-201ENST00000339436 DNAJC5Q9H3Z4 198 aa21.82■■□□□ 1.08
SRSF3-201ENST00000339436 FHAD1B1AJZ9 1412 aa21.81■■□□□ 1.08
SRSF3-201ENST00000339436 OSCARQ8IYS5 282 aa21.79■■□□□ 1.08
SRSF3-201ENST00000339436 GRIN2AQ12879 1464 aa21.78■■□□□ 1.08
SRSF3-201ENST00000339436 FBLN2P98095 1184 aa21.78■■□□□ 1.08
SRSF3-201ENST00000339436 CHMP7Q8WUX9 453 aaPredicted RBP21.76■■□□□ 1.07
SRSF3-201ENST00000339436 IGF1RP08069 1367 aa21.75■■□□□ 1.07
SRSF3-201ENST00000339436 RUSC2Q8N2Y8 1516 aa21.75■■□□□ 1.07
SRSF3-201ENST00000339436 CHIC1Q5VXU3 224 aa21.73■■□□□ 1.07
SRSF3-201ENST00000339436 CLASP1Q7Z460 1538 aa21.73■■□□□ 1.07
SRSF3-201ENST00000339436 CEP170Q5SW79 1584 aa21.69■■□□□ 1.06
SRSF3-201ENST00000339436 NUP160Q12769 1436 aa21.67■■□□□ 1.06
SRSF3-201ENST00000339436 CARMIL1Q5VZK9 1371 aa21.63■■□□□ 1.05
SRSF3-201ENST00000339436 EEA1Q15075 1411 aa21.6■■□□□ 1.05
SRSF3-201ENST00000339436 RIMBP3CA6NJZ7 1639 aa21.58■■□□□ 1.05
SRSF3-201ENST00000339436 RIMBP3BA6NNM3 1639 aa21.58■■□□□ 1.05
SRSF3-201ENST00000339436 RIMBP3Q9UFD9 1639 aa21.58■■□□□ 1.05
SRSF3-201ENST00000339436 ARHGEF11O15085 1522 aa21.57■■□□□ 1.04
SRSF3-201ENST00000339436 RAPGEF2Q9Y4G8 1499 aa21.56■■□□□ 1.04
SRSF3-201ENST00000339436 SHROOM2Q13796 1616 aa21.56■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms