RNA–Protein interactions for RNA: ENST00000487026.5

LIME1-206, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LIME1, Length 805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-206ENST00000487026 NISCHQ9Y2I1 1504 aa61■■■■■ 7.36
LIME1-206ENST00000487026 CCDC180Q9P1Z9 1646 aa54.5■■■■■ 6.31
LIME1-206ENST00000487026 ABCC9O60706 1549 aa54.42■■■■■ 6.3
LIME1-206ENST00000487026 RB1CC1Q8TDY2 1594 aa51.8■■■■■ 5.88
LIME1-206ENST00000487026 DCAF8L2P0C7V8 631 aa51.59■■■■■ 5.85
LIME1-206ENST00000487026 NACADO15069 1562 aa51.5■■■■■ 5.84
LIME1-206ENST00000487026 DNAJC5BQ9UF47 199 aa50.89■■■■■ 5.74
LIME1-206ENST00000487026 MYO15BQ96JP2 1530 aa50.84■■■■■ 5.73
LIME1-206ENST00000487026 PABPN1Q86U42 306 aaKnown RBP eCLIP50.8■■■■■ 5.723e-9■■■■□ 25
LIME1-206ENST00000487026 UNC13AQ9UPW8 1703 aa50.64■■■■■ 5.7
LIME1-206ENST00000487026 ZCCHC6Q5VYS8 1495 aaKnown RBP50.59■■■■■ 5.69
LIME1-206ENST00000487026 BICRAQ9NZM4 1560 aa50.33■■■■■ 5.65
LIME1-206ENST00000487026 DCAF1Q9Y4B6 1507 aa50.31■■■■■ 5.65
LIME1-206ENST00000487026 SCRIBQ14160 1630 aa49.82■■■■■ 5.57
LIME1-206ENST00000487026 SHROOM4Q9ULL8 1493 aa49.53■■■■■ 5.52
LIME1-206ENST00000487026 CC2D2AQ9P2K1 1620 aa49.1■■■■■ 5.45
LIME1-206ENST00000487026 EIF4G1Q04637 1599 aaKnown RBP49.06■■■■■ 5.44
LIME1-206ENST00000487026 CECR2Q9BXF3 1484 aa48.95■■■■■ 5.43
LIME1-206ENST00000487026 NCAPD3P42695 1498 aa47.59■■■■■ 5.21
LIME1-206ENST00000487026 ATAD2BQ9ULI0 1458 aa47.51■■■■■ 5.2
LIME1-206ENST00000487026 SMARCA4P51532 1647 aa47.5■■■■■ 5.19
LIME1-206ENST00000487026 SMARCA2P51531 1590 aa47.33■■■■■ 5.17
LIME1-206ENST00000487026 BAZ1AQ9NRL2 1556 aaPredicted RBP47.29■■■■■ 5.16
LIME1-206ENST00000487026 HMGXB3Q12766 1538 aa47.2■■■■■ 5.15
LIME1-206ENST00000487026 BAZ1BQ9UIG0 1483 aaKnown RBP47.06■■■■■ 5.12
LIME1-206ENST00000487026 MROH2BQ7Z745 1585 aa47.05■■■■■ 5.12
LIME1-206ENST00000487026 PEG3Q9GZU2 1588 aa46.98■■■■■ 5.11
LIME1-206ENST00000487026 ERCC6Q03468 1493 aa46.92■■■■■ 5.1
LIME1-206ENST00000487026 NESP48681 1621 aa46.84■■■■■ 5.09
LIME1-206ENST00000487026 CUX2O14529 1486 aa46.66■■■■■ 5.06
LIME1-206ENST00000487026 WIZO95785 1651 aa46.5■■■■■ 5.03
LIME1-206ENST00000487026 DNAJC5Q9H3Z4 198 aa46.44■■■■■ 5.02
LIME1-206ENST00000487026 LAMC3Q9Y6N6 1575 aa46.43■■■■■ 5.02
LIME1-206ENST00000487026 PDS5BQ9NTI5 1447 aa46.2■■■■■ 4.99
LIME1-206ENST00000487026 CADPSQ9ULU8 1353 aa46.2■■■■■ 4.99
LIME1-206ENST00000487026 RSF1Q96T23 1441 aaPredicted RBP46.19■■■■■ 4.98
LIME1-206ENST00000487026 THOC2Q8NI27 1593 aaKnown RBP46.18■■■■■ 4.98
LIME1-206ENST00000487026 KIF21AQ7Z4S6 1674 aa46.17■■■■■ 4.98
LIME1-206ENST00000487026 TOP2AP11388 1531 aaKnown RBP45.87■■■■■ 4.93
LIME1-206ENST00000487026 MRC2Q9UBG0 1479 aa45.78■■■■■ 4.92
LIME1-206ENST00000487026 CFTRP13569 1480 aa45.7■■■■■ 4.91
LIME1-206ENST00000487026 FANCD2Q9BXW9 1451 aa45.66■■■■■ 4.9
LIME1-206ENST00000487026 CEP164Q9UPV0 1460 aa45.66■■■■■ 4.9
LIME1-206ENST00000487026 WDR62O43379 1518 aa45.62■■■■■ 4.89
LIME1-206ENST00000487026 CCDC88BA6NC98 1476 aa45.43■■■■■ 4.86
LIME1-206ENST00000487026 URB2Q14146 1524 aaKnown RBP45.28■■■■■ 4.84
LIME1-206ENST00000487026 PRDM2Q13029 1718 aa45.16■■■■■ 4.82
LIME1-206ENST00000487026 TOPBP1Q92547 1522 aa44.82■■■■■ 4.77
LIME1-206ENST00000487026 IFT140Q96RY7 1462 aa44.73■■■■■ 4.75
LIME1-206ENST00000487026 OSCARQ8IYS5 282 aa44.71■■■■■ 4.75
LIME1-206ENST00000487026 ZNF608Q9ULD9 1512 aaPredicted RBP44.7■■■■■ 4.75
LIME1-206ENST00000487026 ABCC8Q09428 1581 aa44.69■■■■■ 4.74
LIME1-206ENST00000487026 DNMBPQ6XZF7 1577 aa44.65■■■■■ 4.74
LIME1-206ENST00000487026 TRIM41Q8WV44 630 aa44.61■■■■■ 4.73
LIME1-206ENST00000487026 SUPT5HO00267 1087 aaKnown RBP44.51■■■■■ 4.72
LIME1-206ENST00000487026 EIF4G3O43432 1585 aaKnown RBP44.39■■■■■ 4.7
LIME1-206ENST00000487026 POLA1P09884 1462 aaPredicted RBP44.39■■■■■ 4.7
LIME1-206ENST00000487026 TARBP1Q13395 1621 aaKnown RBP44.38■■■■■ 4.69
LIME1-206ENST00000487026 AQRO60306 1485 aaKnown RBP eCLIP44.37■■■■■ 4.696e-6■■■■□ 25.1
LIME1-206ENST00000487026 RAD54L2Q9Y4B4 1467 aa44.29■■■■■ 4.68
LIME1-206ENST00000487026 SOGA1O94964 1423 aa44.24■■■■■ 4.67
LIME1-206ENST00000487026 FGD5Q6ZNL6 1462 aa44.17■■■■■ 4.66
LIME1-206ENST00000487026 CUX1P39880 1505 aa44.17■■■■■ 4.66
LIME1-206ENST00000487026 TDRD9Q8NDG6 1382 aaKnown RBP44.16■■■■■ 4.66
LIME1-206ENST00000487026 FBLN2P98095 1184 aa44.09■■■■■ 4.65
LIME1-206ENST00000487026 RIMBP3CA6NJZ7 1639 aa44.02■■■■■ 4.64
LIME1-206ENST00000487026 RIMBP3BA6NNM3 1639 aa44.02■■■■■ 4.64
LIME1-206ENST00000487026 RIMBP3Q9UFD9 1639 aa44.02■■■■■ 4.64
LIME1-206ENST00000487026 CHD1O14646 1710 aa44.02■■■■■ 4.64
LIME1-206ENST00000487026 ARHGEF11O15085 1522 aa43.92■■■■■ 4.62
LIME1-206ENST00000487026 SNAPC4Q5SXM2 1469 aa43.86■■■■■ 4.61
LIME1-206ENST00000487026 WDR97A6NE52 1622 aa43.84■■■■■ 4.61
LIME1-206ENST00000487026 GRIN2BQ13224 1484 aa43.76■■■■■ 4.6
LIME1-206ENST00000487026 CHMP7Q8WUX9 453 aaPredicted RBP43.76■■■■■ 4.6
LIME1-206ENST00000487026 MAGI1Q96QZ7 1491 aaPredicted RBP43.7■■■■■ 4.59
LIME1-206ENST00000487026 CYB5RLQ6IPT4 315 aa43.7■■■■■ 4.59
LIME1-206ENST00000487026 GAPVD1Q14C86 1478 aa43.67■■■■■ 4.58
LIME1-206ENST00000487026 ABCA10Q8WWZ4 1543 aa43.64■■■■■ 4.58
LIME1-206ENST00000487026 SYNJ2O15056 1496 aa43.57■■■■■ 4.57
LIME1-206ENST00000487026 PBRM1Q86U86 1689 aa43.57■■■■■ 4.57
LIME1-206ENST00000487026 WRNQ14191 1432 aaPredicted RBP eCLIP43.56■■■■■ 4.56
LIME1-206ENST00000487026 ARAP1Q96P48 1450 aa43.52■■■■■ 4.56
LIME1-206ENST00000487026 ABCA5Q8WWZ7 1642 aa43.52■■■■■ 4.56
LIME1-206ENST00000487026 SYNJ1O43426 1573 aa43.5■■■■■ 4.55
LIME1-206ENST00000487026 CLASP1Q7Z460 1538 aa43.5■■■■■ 4.55
LIME1-206ENST00000487026 TOP2BQ02880 1626 aa43.5■■■■■ 4.55
LIME1-206ENST00000487026 BIVM-ERCC5R4GMW8 1640 aa43.48■■■■■ 4.55
LIME1-206ENST00000487026 GRIN2AQ12879 1464 aa43.2■■■■■ 4.51
LIME1-206ENST00000487026 ADAMTS12P58397 1594 aa43.18■■■■■ 4.5
LIME1-206ENST00000487026 TRHP20396 242 aaPredicted RBP43.13■■■■■ 4.49
LIME1-206ENST00000487026 FHAD1B1AJZ9 1412 aa43.12■■■■■ 4.49
LIME1-206ENST00000487026 ERICH3Q5RHP9 1530 aa43.08■■■■■ 4.49
LIME1-206ENST00000487026 CEP170Q5SW79 1584 aa43.04■■■■■ 4.48
LIME1-206ENST00000487026 NUP160Q12769 1436 aa43.04■■■■■ 4.48
LIME1-206ENST00000487026 ERCC6L2Q5T890 1561 aa42.95■■■■■ 4.47
LIME1-206ENST00000487026 SHROOM2Q13796 1616 aa42.78■■■■■ 4.44
LIME1-206ENST00000487026 IGF1RP08069 1367 aa42.71■■■■■ 4.43
LIME1-206ENST00000487026 JPH4Q96JJ6 628 aa42.7■■■■■ 4.43
LIME1-206ENST00000487026 KIF27Q86VH2 1401 aa42.7■■■■■ 4.43
LIME1-206ENST00000487026 PRG4Q92954 1404 aaPredicted RBP42.67■■■■■ 4.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms