RNA–Protein interactions for RNA: ENST00000613941.4

SRSF3-204, Transcript of serine and arginine rich splicing factor 3, humanhuman

TSL 4

Gene SRSF3, Length 595 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRSF3-204ENST00000613941 NISCHQ9Y2I1 1504 aa27.45■■□□□ 1.98
SRSF3-204ENST00000613941 ABCC9O60706 1549 aa25.68■■□□□ 1.7
SRSF3-204ENST00000613941 CCDC180Q9P1Z9 1646 aa25.04■■□□□ 1.6
SRSF3-204ENST00000613941 DNAJC5BQ9UF47 199 aa24.65■■□□□ 1.54
SRSF3-204ENST00000613941 RB1CC1Q8TDY2 1594 aa24.11■■□□□ 1.45
SRSF3-204ENST00000613941 UNC13AQ9UPW8 1703 aa23.83■■□□□ 1.41
SRSF3-204ENST00000613941 PABPN1Q86U42 306 aaKnown RBP eCLIP23.74■■□□□ 1.39
SRSF3-204ENST00000613941 NACADO15069 1562 aa23.73■■□□□ 1.39
SRSF3-204ENST00000613941 BICRAQ9NZM4 1560 aa23.49■■□□□ 1.35
SRSF3-204ENST00000613941 DCAF8L2P0C7V8 631 aa23.45■■□□□ 1.34
SRSF3-204ENST00000613941 CC2D2AQ9P2K1 1620 aa23.21■■□□□ 1.31
SRSF3-204ENST00000613941 CECR2Q9BXF3 1484 aa23.16■■□□□ 1.3
SRSF3-204ENST00000613941 MYO15BQ96JP2 1530 aa23.09■■□□□ 1.29
SRSF3-204ENST00000613941 DNAJC5Q9H3Z4 198 aa23.06■■□□□ 1.28
SRSF3-204ENST00000613941 EIF4G1Q04637 1599 aaKnown RBP22.94■■□□□ 1.26
SRSF3-204ENST00000613941 SHROOM4Q9ULL8 1493 aa22.93■■□□□ 1.26
SRSF3-204ENST00000613941 SCRIBQ14160 1630 aa22.82■■□□□ 1.24
SRSF3-204ENST00000613941 ZCCHC6Q5VYS8 1495 aaKnown RBP22.62■■□□□ 1.21
SRSF3-204ENST00000613941 DCAF1Q9Y4B6 1507 aa22.57■■□□□ 1.2
SRSF3-204ENST00000613941 CUX2O14529 1486 aa22.34■■□□□ 1.17
SRSF3-204ENST00000613941 ERCC6Q03468 1493 aa22.19■■□□□ 1.14
SRSF3-204ENST00000613941 NESP48681 1621 aa21.89■■□□□ 1.09
SRSF3-204ENST00000613941 TRIM41Q8WV44 630 aa21.87■■□□□ 1.09
SRSF3-204ENST00000613941 THOC2Q8NI27 1593 aaKnown RBP21.86■■□□□ 1.09
SRSF3-204ENST00000613941 NCAPD3P42695 1498 aa21.85■■□□□ 1.09
SRSF3-204ENST00000613941 ATAD2BQ9ULI0 1458 aa21.75■■□□□ 1.07
SRSF3-204ENST00000613941 KIF21AQ7Z4S6 1674 aa21.72■■□□□ 1.07
SRSF3-204ENST00000613941 HMGXB3Q12766 1538 aa21.71■■□□□ 1.07
SRSF3-204ENST00000613941 SMARCA2P51531 1590 aa21.7■■□□□ 1.06
SRSF3-204ENST00000613941 SMARCA4P51532 1647 aa21.65■■□□□ 1.06
SRSF3-204ENST00000613941 LAMC3Q9Y6N6 1575 aa21.57■■□□□ 1.04
SRSF3-204ENST00000613941 BAZ1BQ9UIG0 1483 aaKnown RBP21.52■■□□□ 1.04
SRSF3-204ENST00000613941 BAZ1AQ9NRL2 1556 aaPredicted RBP21.43■■□□□ 1.02
SRSF3-204ENST00000613941 PDS5BQ9NTI5 1447 aa21.37■■□□□ 1.01
SRSF3-204ENST00000613941 PEG3Q9GZU2 1588 aa21.36■■□□□ 1.01
SRSF3-204ENST00000613941 MRC2Q9UBG0 1479 aa21.31■■□□□ 1
SRSF3-204ENST00000613941 WDR62O43379 1518 aa21.3■■□□□ 1
SRSF3-204ENST00000613941 MROH2BQ7Z745 1585 aa21.19■□□□□ 0.98
SRSF3-204ENST00000613941 RIMBP3CA6NJZ7 1639 aa21.16■□□□□ 0.98
SRSF3-204ENST00000613941 RIMBP3BA6NNM3 1639 aa21.16■□□□□ 0.98
SRSF3-204ENST00000613941 RIMBP3Q9UFD9 1639 aa21.16■□□□□ 0.98
SRSF3-204ENST00000613941 CADPSQ9ULU8 1353 aa21.15■□□□□ 0.98
SRSF3-204ENST00000613941 OSCARQ8IYS5 282 aa21.12■□□□□ 0.97
SRSF3-204ENST00000613941 CEP164Q9UPV0 1460 aa21.09■□□□□ 0.97
SRSF3-204ENST00000613941 WIZO95785 1651 aa21■□□□□ 0.95
SRSF3-204ENST00000613941 FANCD2Q9BXW9 1451 aa21■□□□□ 0.95
SRSF3-204ENST00000613941 ARHGEF11O15085 1522 aa20.94■□□□□ 0.94
SRSF3-204ENST00000613941 URB2Q14146 1524 aaKnown RBP20.91■□□□□ 0.94
SRSF3-204ENST00000613941 PRDM2Q13029 1718 aa20.81■□□□□ 0.92
SRSF3-204ENST00000613941 CFTRP13569 1480 aa20.8■□□□□ 0.92
SRSF3-204ENST00000613941 ZNF608Q9ULD9 1512 aaPredicted RBP20.78■□□□□ 0.92
SRSF3-204ENST00000613941 CHD1O14646 1710 aa20.77■□□□□ 0.92
SRSF3-204ENST00000613941 TRHP20396 242 aaPredicted RBP20.76■□□□□ 0.91
SRSF3-204ENST00000613941 CYB5RLQ6IPT4 315 aa20.74■□□□□ 0.91
SRSF3-204ENST00000613941 EIF4G3O43432 1585 aaKnown RBP20.69■□□□□ 0.9
SRSF3-204ENST00000613941 ARAP1Q96P48 1450 aa20.69■□□□□ 0.9
SRSF3-204ENST00000613941 IFT140Q96RY7 1462 aa20.65■□□□□ 0.9
SRSF3-204ENST00000613941 AEBP2Q6ZN18 517 aaPredicted RBP20.65■□□□□ 0.9
SRSF3-204ENST00000613941 TOP2AP11388 1531 aaKnown RBP20.58■□□□□ 0.89
SRSF3-204ENST00000613941 TOPBP1Q92547 1522 aa20.54■□□□□ 0.88
SRSF3-204ENST00000613941 RSF1Q96T23 1441 aaPredicted RBP20.48■□□□□ 0.87
SRSF3-204ENST00000613941 TARBP1Q13395 1621 aaKnown RBP20.47■□□□□ 0.87
SRSF3-204ENST00000613941 AQRO60306 1485 aaKnown RBP eCLIP20.45■□□□□ 0.861e-8■■■□□ 18.9
SRSF3-204ENST00000613941 FBLN2P98095 1184 aa20.43■□□□□ 0.86
SRSF3-204ENST00000613941 DNMBPQ6XZF7 1577 aa20.42■□□□□ 0.86
SRSF3-204ENST00000613941 CLASP1Q7Z460 1538 aa20.35■□□□□ 0.85
SRSF3-204ENST00000613941 ABCC8Q09428 1581 aa20.34■□□□□ 0.85
SRSF3-204ENST00000613941 CCDC88BA6NC98 1476 aa20.32■□□□□ 0.84
SRSF3-204ENST00000613941 POLA1P09884 1462 aaPredicted RBP20.28■□□□□ 0.84
SRSF3-204ENST00000613941 SYNJ1O43426 1573 aa20.26■□□□□ 0.83
SRSF3-204ENST00000613941 SNAPC4Q5SXM2 1469 aa20.25■□□□□ 0.83
SRSF3-204ENST00000613941 RAD54L2Q9Y4B4 1467 aa20.24■□□□□ 0.83
SRSF3-204ENST00000613941 TDRD9Q8NDG6 1382 aaKnown RBP20.2■□□□□ 0.82
SRSF3-204ENST00000613941 GAPVD1Q14C86 1478 aa20.14■□□□□ 0.81
SRSF3-204ENST00000613941 PBRM1Q86U86 1689 aa20.13■□□□□ 0.81
SRSF3-204ENST00000613941 WDR97A6NE52 1622 aa20.13■□□□□ 0.81
SRSF3-204ENST00000613941 MAGI1Q96QZ7 1491 aaPredicted RBP20.11■□□□□ 0.81
SRSF3-204ENST00000613941 SOGA1O94964 1423 aa20.11■□□□□ 0.81
SRSF3-204ENST00000613941 CHMP7Q8WUX9 453 aaPredicted RBP20.11■□□□□ 0.81
SRSF3-204ENST00000613941 KIF13AQ9H1H9 1805 aa20.1■□□□□ 0.81
SRSF3-204ENST00000613941 FGD5Q6ZNL6 1462 aa20.07■□□□□ 0.8
SRSF3-204ENST00000613941 SYNJ2O15056 1496 aa20.05■□□□□ 0.8
SRSF3-204ENST00000613941 ERCC6L2Q5T890 1561 aa20.05■□□□□ 0.8
SRSF3-204ENST00000613941 GRIN2BQ13224 1484 aa20.04■□□□□ 0.8
SRSF3-204ENST00000613941 CUX1P39880 1505 aa19.96■□□□□ 0.79
SRSF3-204ENST00000613941 CEP170Q5SW79 1584 aa19.9■□□□□ 0.78
SRSF3-204ENST00000613941 ABCA5Q8WWZ7 1642 aa19.89■□□□□ 0.77
SRSF3-204ENST00000613941 ILDR1Q86SU0 546 aaPredicted RBP19.88■□□□□ 0.77
SRSF3-204ENST00000613941 SHROOM2Q13796 1616 aa19.84■□□□□ 0.77
SRSF3-204ENST00000613941 GRIN2AQ12879 1464 aa19.81■□□□□ 0.76
SRSF3-204ENST00000613941 ADAMTS12P58397 1594 aa19.79■□□□□ 0.76
SRSF3-204ENST00000613941 TSPOAP1O95153 1857 aa19.78■□□□□ 0.76
SRSF3-204ENST00000613941 ABCA10Q8WWZ4 1543 aa19.76■□□□□ 0.75
SRSF3-204ENST00000613941 NUP160Q12769 1436 aa19.74■□□□□ 0.75
SRSF3-204ENST00000613941 KDM6BO15054 1643 aa19.73■□□□□ 0.75
SRSF3-204ENST00000613941 KDM4FA0A1W2PPD8 638 aa19.73■□□□□ 0.75
SRSF3-204ENST00000613941 DIP2BQ9P265 1576 aa19.71■□□□□ 0.75
SRSF3-204ENST00000613941 ABCC10Q5T3U5 1492 aa19.67■□□□□ 0.74
SRSF3-204ENST00000613941 FAM69CQ0P6D2 419 aa19.66■□□□□ 0.74
SRSF3-204ENST00000613941 MAPKBP1O60336 1514 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms