RNA–Protein interactions for RNA: ENST00000372189.7

RAPGEF1-201, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RAPGEF1, Length 6,085 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-201ENST00000372189 DCAF8L2P0C7V8 631 aa23.63■■□□□ 1.37
RAPGEF1-201ENST00000372189 NISCHQ9Y2I1 1504 aa23.09■■□□□ 1.29
RAPGEF1-201ENST00000372189 SUPT5HO00267 1087 aaKnown RBP22■■□□□ 1.11
RAPGEF1-201ENST00000372189 MYT1Q01538 1121 aa21.98■■□□□ 1.11
RAPGEF1-201ENST00000372189 SHROOM4Q9ULL8 1493 aa21.87■■□□□ 1.09
RAPGEF1-201ENST00000372189 PELP1Q8IZL8 1130 aaKnown RBP21.44■■□□□ 1.02
RAPGEF1-201ENST00000372189 EHMT2Q96KQ7 1210 aa21.19■□□□□ 0.98
RAPGEF1-201ENST00000372189 FAM9AQ8IZU1 332 aaPredicted RBP20.91■□□□□ 0.94
RAPGEF1-201ENST00000372189 TTBK1Q5TCY1 1321 aaPredicted RBP20.91■□□□□ 0.94
RAPGEF1-201ENST00000372189 APLP2Q06481 763 aa20.89■□□□□ 0.93
RAPGEF1-201ENST00000372189 ERICH6Q7L0X2 663 aa20.61■□□□□ 0.89
RAPGEF1-201ENST00000372189 TRIM41Q8WV44 630 aa20.48■□□□□ 0.87
RAPGEF1-201ENST00000372189 RANGAP1P46060 587 aaPredicted RBP20.48■□□□□ 0.87
RAPGEF1-201ENST00000372189 ATP1B4Q9UN42 357 aaPredicted RBP20.36■□□□□ 0.85
RAPGEF1-201ENST00000372189 PCGF6Q9BYE7 350 aa20.28■□□□□ 0.84
RAPGEF1-201ENST00000372189 CCER1Q8TC90 406 aaPredicted RBP20.26■□□□□ 0.83
RAPGEF1-201ENST00000372189 UBTFP17480 764 aaKnown RBP20.24■□□□□ 0.83
RAPGEF1-201ENST00000372189 CENPBP07199 599 aaPredicted RBP20.21■□□□□ 0.83
RAPGEF1-201ENST00000372189 ABCC9O60706 1549 aa20.19■□□□□ 0.82
RAPGEF1-201ENST00000372189 ZEB1P37275 1124 aaPredicted RBP20.18■□□□□ 0.82
RAPGEF1-201ENST00000372189 YTHDC1Q96MU7 727 aaKnown RBP20.05■□□□□ 0.8
RAPGEF1-201ENST00000372189 PABPN1Q86U42 306 aaKnown RBP eCLIP19.95■□□□□ 0.78
RAPGEF1-201ENST00000372189 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.79■□□□□ 0.76
RAPGEF1-201ENST00000372189 HNRNPUL2Q1KMD3 747 aaKnown RBP19.79■□□□□ 0.76
RAPGEF1-201ENST00000372189 MYT1LQ9UL68 1186 aa19.74■□□□□ 0.75
RAPGEF1-201ENST00000372189 NEFLP07196 543 aa19.64■□□□□ 0.73
RAPGEF1-201ENST00000372189 PPARGC1BQ86YN6 1023 aaKnown RBP19.6■□□□□ 0.73
RAPGEF1-201ENST00000372189 HRCP23327 699 aa19.48■□□□□ 0.71
RAPGEF1-201ENST00000372189 ITGAEP38570 1179 aa19.47■□□□□ 0.71
RAPGEF1-201ENST00000372189 TRIM26Q12899 539 aaPredicted RBP19.45■□□□□ 0.7
RAPGEF1-201ENST00000372189 CHIC1Q5VXU3 224 aa19.42■□□□□ 0.7
RAPGEF1-201ENST00000372189 LOC105371045A0A1W2PR82 267 aa19.35■□□□□ 0.69
RAPGEF1-201ENST00000372189 FBLN2P98095 1184 aa19.3■□□□□ 0.68
RAPGEF1-201ENST00000372189 GLIPR1L2Q4G1C9 344 aa19.26■□□□□ 0.67
RAPGEF1-201ENST00000372189 SCRIBQ14160 1630 aa19.22■□□□□ 0.67
RAPGEF1-201ENST00000372189 CCDC180Q9P1Z9 1646 aa19.19■□□□□ 0.66
RAPGEF1-201ENST00000372189 POLR3GLQ9BT43 218 aa19.17■□□□□ 0.66
RAPGEF1-201ENST00000372189 FAM50AQ14320 339 aaKnown RBP19.11■□□□□ 0.65
RAPGEF1-201ENST00000372189 ZCCHC6Q5VYS8 1495 aaKnown RBP19.07■□□□□ 0.64
RAPGEF1-201ENST00000372189 DAXXQ9UER7 740 aaPredicted RBP19.05■□□□□ 0.64
RAPGEF1-201ENST00000372189 RTL5Q5HYW3 569 aaPredicted RBP18.99■□□□□ 0.63
RAPGEF1-201ENST00000372189 TRIM52Q96A61 297 aa18.99■□□□□ 0.63
RAPGEF1-201ENST00000372189 SLC4A1APQ9BWU0 796 aaKnown RBP18.98■□□□□ 0.63
RAPGEF1-201ENST00000372189 RB1CC1Q8TDY2 1594 aa18.96■□□□□ 0.63
RAPGEF1-201ENST00000372189 SLC24A1O60721 1099 aa18.9■□□□□ 0.62
RAPGEF1-201ENST00000372189 P3H3Q8IVL6 736 aa18.88■□□□□ 0.61
RAPGEF1-201ENST00000372189 CNGB1Q14028 1251 aaPredicted RBP18.88■□□□□ 0.61
RAPGEF1-201ENST00000372189 DIEXFQ68CQ4 756 aaKnown RBP18.87■□□□□ 0.61
RAPGEF1-201ENST00000372189 ARID3CA6NKF2 412 aa18.85■□□□□ 0.61
RAPGEF1-201ENST00000372189 EIF5BO60841 1220 aaKnown RBP18.85■□□□□ 0.61
RAPGEF1-201ENST00000372189 CSRNP3Q8WYN3 585 aa18.83■□□□□ 0.61
RAPGEF1-201ENST00000372189 CDK11AQ9UQ88 783 aaPredicted RBP18.75■□□□□ 0.59
RAPGEF1-201ENST00000372189 NEUROD1Q13562 356 aa18.73■□□□□ 0.59
RAPGEF1-201ENST00000372189 NACADO15069 1562 aa18.71■□□□□ 0.59
RAPGEF1-201ENST00000372189 NPM1P06748 294 aaKnown RBP eCLIP18.71■□□□□ 0.59
RAPGEF1-201ENST00000372189 ZNF777Q9ULD5 760 aaPredicted RBP18.71■□□□□ 0.59
RAPGEF1-201ENST00000372189 ZNF326Q5BKZ1 582 aaKnown RBP18.67■□□□□ 0.58
RAPGEF1-201ENST00000372189 BCANQ96GW7 911 aa18.66■□□□□ 0.58
RAPGEF1-201ENST00000372189 GTF3C3Q9Y5Q9 886 aa18.64■□□□□ 0.58
RAPGEF1-201ENST00000372189 ZNF316A6NFI3 1004 aaPredicted RBP18.63■□□□□ 0.57
RAPGEF1-201ENST00000372189 ESF1Q9H501 851 aaKnown RBP18.62■□□□□ 0.57
RAPGEF1-201ENST00000372189 CHMP7Q8WUX9 453 aaPredicted RBP18.57■□□□□ 0.56
RAPGEF1-201ENST00000372189 CLSPNQ9HAW4 1339 aa18.49■□□□□ 0.55
RAPGEF1-201ENST00000372189 BAZ1BQ9UIG0 1483 aaKnown RBP18.48■□□□□ 0.55
RAPGEF1-201ENST00000372189 STAG3Q9UJ98 1225 aa18.43■□□□□ 0.54
RAPGEF1-201ENST00000372189 PLPPR3Q6T4P5 718 aa18.42■□□□□ 0.54
RAPGEF1-201ENST00000372189 ACIN1Q9UKV3 1341 aaKnown RBP18.42■□□□□ 0.54
RAPGEF1-201ENST00000372189 ERCC6Q03468 1493 aa18.38■□□□□ 0.53
RAPGEF1-201ENST00000372189 ANP32CO43423 234 aa18.38■□□□□ 0.53
RAPGEF1-201ENST00000372189 CHGAP10645 457 aaKnown RBP18.37■□□□□ 0.53
RAPGEF1-201ENST00000372189 RSF1Q96T23 1441 aaPredicted RBP18.35■□□□□ 0.53
RAPGEF1-201ENST00000372189 NEFMP07197 916 aa18.29■□□□□ 0.52
RAPGEF1-201ENST00000372189 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.26■□□□□ 0.512e-10■■■□□ 18.1
RAPGEF1-201ENST00000372189 TSPY4P0CV99 314 aa18.25■□□□□ 0.51
RAPGEF1-201ENST00000372189 TSPY10P0CW01 314 aa18.25■□□□□ 0.51
RAPGEF1-201ENST00000372189 MTUS2Q5JR59 1369 aa18.25■□□□□ 0.51
RAPGEF1-201ENST00000372189 BAZ1AQ9NRL2 1556 aaPredicted RBP18.24■□□□□ 0.51
RAPGEF1-201ENST00000372189 CHIC2Q9UKJ5 165 aa18.24■□□□□ 0.51
RAPGEF1-201ENST00000372189 DCAF1Q9Y4B6 1507 aa18.22■□□□□ 0.51
RAPGEF1-201ENST00000372189 WRNQ14191 1432 aaPredicted RBP eCLIP18.21■□□□□ 0.519e-6■■■■■ 50.1
RAPGEF1-201ENST00000372189 KCNH8Q96L42 1107 aa18.2■□□□□ 0.5
RAPGEF1-201ENST00000372189 TONSLQ96HA7 1378 aa18.17■□□□□ 0.5
RAPGEF1-201ENST00000372189 PLEKHD1A6NEE1 506 aa18.16■□□□□ 0.5
RAPGEF1-201ENST00000372189 ZBTB47Q9UFB7 747 aaPredicted RBP18.16■□□□□ 0.5
RAPGEF1-201ENST00000372189 CLIP1P30622 1438 aa18.15■□□□□ 0.5
RAPGEF1-201ENST00000372189 KIF27Q86VH2 1401 aa18.15■□□□□ 0.5
RAPGEF1-201ENST00000372189 ANP32AP39687 249 aaKnown RBP18.15■□□□□ 0.5
RAPGEF1-201ENST00000372189 EEA1Q15075 1411 aa18.14■□□□□ 0.49
RAPGEF1-201ENST00000372189 TNNT2P45379 298 aaPredicted RBP18.14■□□□□ 0.49
RAPGEF1-201ENST00000372189 CANXP27824 592 aaKnown RBP18.11■□□□□ 0.49
RAPGEF1-201ENST00000372189 CDK11BP21127 795 aaKnown RBP18.1■□□□□ 0.49
RAPGEF1-201ENST00000372189 GOLGA3Q08378 1498 aa18.1■□□□□ 0.49
RAPGEF1-201ENST00000372189 CECR2Q9BXF3 1484 aa18.07■□□□□ 0.48
RAPGEF1-201ENST00000372189 ARID4BQ4LE39 1312 aaPredicted RBP18.01■□□□□ 0.47
RAPGEF1-201ENST00000372189 FKBP8Q14318 412 aa17.98■□□□□ 0.47
RAPGEF1-201ENST00000372189 KDM2AQ9Y2K7 1162 aa17.98■□□□□ 0.47
RAPGEF1-201ENST00000372189 SMARCA2P51531 1590 aa17.97■□□□□ 0.47
RAPGEF1-201ENST00000372189 RRP7BPQ9NSQ0 103 aa17.96■□□□□ 0.47
RAPGEF1-201ENST00000372189 PPP1R15AO75807 674 aaPredicted RBP17.96■□□□□ 0.47
RAPGEF1-201ENST00000372189 CEP164Q9UPV0 1460 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms