RNA–Protein interactions for RNA: ENST00000372190.7

RAPGEF1-202, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene RAPGEF1, Length 6,045 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-202ENST00000372190 DCAF8L2P0C7V8 631 aa24.8■■□□□ 1.56
RAPGEF1-202ENST00000372190 NISCHQ9Y2I1 1504 aa24.05■■□□□ 1.44
RAPGEF1-202ENST00000372190 PELP1Q8IZL8 1130 aaKnown RBP23.34■■□□□ 1.33
RAPGEF1-202ENST00000372190 MYT1Q01538 1121 aa23.06■■□□□ 1.28
RAPGEF1-202ENST00000372190 SUPT5HO00267 1087 aaKnown RBP22.83■■□□□ 1.25
RAPGEF1-202ENST00000372190 SHROOM4Q9ULL8 1493 aa22.78■■□□□ 1.24
RAPGEF1-202ENST00000372190 ERICH6Q7L0X2 663 aa22.42■■□□□ 1.18
RAPGEF1-202ENST00000372190 CCER1Q8TC90 406 aaPredicted RBP22.18■■□□□ 1.14
RAPGEF1-202ENST00000372190 EHMT2Q96KQ7 1210 aa22.08■■□□□ 1.13
RAPGEF1-202ENST00000372190 FAM9AQ8IZU1 332 aaPredicted RBP21.91■■□□□ 1.1
RAPGEF1-202ENST00000372190 TTBK1Q5TCY1 1321 aaPredicted RBP21.8■■□□□ 1.08
RAPGEF1-202ENST00000372190 CENPBP07199 599 aaPredicted RBP21.74■■□□□ 1.07
RAPGEF1-202ENST00000372190 APLP2Q06481 763 aa21.72■■□□□ 1.07
RAPGEF1-202ENST00000372190 YTHDC1Q96MU7 727 aaKnown RBP21.54■■□□□ 1.04
RAPGEF1-202ENST00000372190 RANGAP1P46060 587 aaPredicted RBP21.39■■□□□ 1.02
RAPGEF1-202ENST00000372190 ATP1B4Q9UN42 357 aaPredicted RBP21.3■■□□□ 1
RAPGEF1-202ENST00000372190 ABCC9O60706 1549 aa21.29■■□□□ 1
RAPGEF1-202ENST00000372190 TRIM41Q8WV44 630 aa21.25■□□□□ 0.99
RAPGEF1-202ENST00000372190 NEFLP07196 543 aa21.18■□□□□ 0.98
RAPGEF1-202ENST00000372190 PCGF6Q9BYE7 350 aa21.08■□□□□ 0.96
RAPGEF1-202ENST00000372190 UBTFP17480 764 aaKnown RBP21.06■□□□□ 0.96
RAPGEF1-202ENST00000372190 PABPN1Q86U42 306 aaKnown RBP eCLIP21.01■□□□□ 0.95
RAPGEF1-202ENST00000372190 ZEB1P37275 1124 aaPredicted RBP20.96■□□□□ 0.95
RAPGEF1-202ENST00000372190 DAXXQ9UER7 740 aaPredicted RBP20.93■□□□□ 0.94
RAPGEF1-202ENST00000372190 RTL5Q5HYW3 569 aaPredicted RBP20.75■□□□□ 0.91
RAPGEF1-202ENST00000372190 MYT1LQ9UL68 1186 aa20.75■□□□□ 0.91
RAPGEF1-202ENST00000372190 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.74■□□□□ 0.91
RAPGEF1-202ENST00000372190 HNRNPUL2Q1KMD3 747 aaKnown RBP20.74■□□□□ 0.91
RAPGEF1-202ENST00000372190 GLIPR1L2Q4G1C9 344 aa20.44■□□□□ 0.86
RAPGEF1-202ENST00000372190 ZNF316A6NFI3 1004 aaPredicted RBP20.36■□□□□ 0.85
RAPGEF1-202ENST00000372190 FBLN2P98095 1184 aa20.33■□□□□ 0.84
RAPGEF1-202ENST00000372190 PPARGC1BQ86YN6 1023 aaKnown RBP20.31■□□□□ 0.84
RAPGEF1-202ENST00000372190 ITGAEP38570 1179 aa20.26■□□□□ 0.83
RAPGEF1-202ENST00000372190 CHIC1Q5VXU3 224 aa20.25■□□□□ 0.83
RAPGEF1-202ENST00000372190 EIF5BO60841 1220 aaKnown RBP20.19■□□□□ 0.82
RAPGEF1-202ENST00000372190 HRCP23327 699 aa20.18■□□□□ 0.82
RAPGEF1-202ENST00000372190 TRIM26Q12899 539 aaPredicted RBP20.16■□□□□ 0.82
RAPGEF1-202ENST00000372190 SCRIBQ14160 1630 aa20.13■□□□□ 0.81
RAPGEF1-202ENST00000372190 CCDC180Q9P1Z9 1646 aa20.07■□□□□ 0.8
RAPGEF1-202ENST00000372190 LOC105371045A0A1W2PR82 267 aa19.96■□□□□ 0.79
RAPGEF1-202ENST00000372190 POLR3GLQ9BT43 218 aa19.95■□□□□ 0.78
RAPGEF1-202ENST00000372190 RB1CC1Q8TDY2 1594 aa19.92■□□□□ 0.78
RAPGEF1-202ENST00000372190 CLSPNQ9HAW4 1339 aa19.89■□□□□ 0.77
RAPGEF1-202ENST00000372190 FAM50AQ14320 339 aaKnown RBP19.88■□□□□ 0.77
RAPGEF1-202ENST00000372190 SLC4A1APQ9BWU0 796 aaKnown RBP19.83■□□□□ 0.77
RAPGEF1-202ENST00000372190 ZCCHC6Q5VYS8 1495 aaKnown RBP19.83■□□□□ 0.76
RAPGEF1-202ENST00000372190 TRIM52Q96A61 297 aa19.77■□□□□ 0.75
RAPGEF1-202ENST00000372190 ARID3CA6NKF2 412 aa19.75■□□□□ 0.75
RAPGEF1-202ENST00000372190 P3H3Q8IVL6 736 aa19.72■□□□□ 0.75
RAPGEF1-202ENST00000372190 NPM1P06748 294 aaKnown RBP eCLIP19.7■□□□□ 0.74
RAPGEF1-202ENST00000372190 CDK11AQ9UQ88 783 aaPredicted RBP19.7■□□□□ 0.74
RAPGEF1-202ENST00000372190 CNGB1Q14028 1251 aaPredicted RBP19.64■□□□□ 0.73
RAPGEF1-202ENST00000372190 BCANQ96GW7 911 aa19.61■□□□□ 0.73
RAPGEF1-202ENST00000372190 ANP32BQ92688 251 aaKnown RBP19.61■□□□□ 0.73
RAPGEF1-202ENST00000372190 NACADO15069 1562 aa19.6■□□□□ 0.73
RAPGEF1-202ENST00000372190 GTF3C3Q9Y5Q9 886 aa19.59■□□□□ 0.73
RAPGEF1-202ENST00000372190 ESF1Q9H501 851 aaKnown RBP19.59■□□□□ 0.73
RAPGEF1-202ENST00000372190 DIEXFQ68CQ4 756 aaKnown RBP19.58■□□□□ 0.73
RAPGEF1-202ENST00000372190 ZNF777Q9ULD5 760 aaPredicted RBP19.56■□□□□ 0.72
RAPGEF1-202ENST00000372190 CSRNP3Q8WYN3 585 aa19.53■□□□□ 0.72
RAPGEF1-202ENST00000372190 CHMP7Q8WUX9 453 aaPredicted RBP19.5■□□□□ 0.71
RAPGEF1-202ENST00000372190 ANP32AP39687 249 aaKnown RBP19.5■□□□□ 0.71
RAPGEF1-202ENST00000372190 TNNT2P45379 298 aaPredicted RBP19.48■□□□□ 0.71
RAPGEF1-202ENST00000372190 PLPPR3Q6T4P5 718 aa19.47■□□□□ 0.71
RAPGEF1-202ENST00000372190 ZNF326Q5BKZ1 582 aaKnown RBP19.44■□□□□ 0.7
RAPGEF1-202ENST00000372190 NEUROD1Q13562 356 aa19.42■□□□□ 0.7
RAPGEF1-202ENST00000372190 ERCC6Q03468 1493 aa19.42■□□□□ 0.7
RAPGEF1-202ENST00000372190 BAZ1BQ9UIG0 1483 aaKnown RBP19.35■□□□□ 0.69
RAPGEF1-202ENST00000372190 STAG3Q9UJ98 1225 aa19.33■□□□□ 0.69
RAPGEF1-202ENST00000372190 CDK11BP21127 795 aaKnown RBP19.28■□□□□ 0.68
RAPGEF1-202ENST00000372190 ZBTB47Q9UFB7 747 aaPredicted RBP19.27■□□□□ 0.68
RAPGEF1-202ENST00000372190 CHGAP10645 457 aaKnown RBP19.23■□□□□ 0.67
RAPGEF1-202ENST00000372190 SLC24A1O60721 1099 aa19.14■□□□□ 0.65
RAPGEF1-202ENST00000372190 ACIN1Q9UKV3 1341 aaKnown RBP19.14■□□□□ 0.65
RAPGEF1-202ENST00000372190 TRIM44Q96DX7 344 aaPredicted RBP19.13■□□□□ 0.65
RAPGEF1-202ENST00000372190 NPM2Q86SE8 214 aaKnown RBP19.12■□□□□ 0.65
RAPGEF1-202ENST00000372190 KCNH8Q96L42 1107 aa19.1■□□□□ 0.65
RAPGEF1-202ENST00000372190 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.08■□□□□ 0.652e-10■■■□□ 18.1
RAPGEF1-202ENST00000372190 ANP32CO43423 234 aa19.07■□□□□ 0.64
RAPGEF1-202ENST00000372190 RSF1Q96T23 1441 aaPredicted RBP19.05■□□□□ 0.64
RAPGEF1-202ENST00000372190 NEFMP07197 916 aa19.04■□□□□ 0.64
RAPGEF1-202ENST00000372190 TSPY4P0CV99 314 aa19.04■□□□□ 0.64
RAPGEF1-202ENST00000372190 TSPY10P0CW01 314 aa19.04■□□□□ 0.64
RAPGEF1-202ENST00000372190 NBR1Q14596 966 aa19.04■□□□□ 0.64
RAPGEF1-202ENST00000372190 NCLP19338 710 aaKnown RBP19.02■□□□□ 0.64
RAPGEF1-202ENST00000372190 BAZ1AQ9NRL2 1556 aaPredicted RBP19.02■□□□□ 0.64
RAPGEF1-202ENST00000372190 MTUS2Q5JR59 1369 aa19■□□□□ 0.63
RAPGEF1-202ENST00000372190 CHIC2Q9UKJ5 165 aa18.99■□□□□ 0.63
RAPGEF1-202ENST00000372190 HSP90AA1P07900 732 aaKnown RBP18.99■□□□□ 0.63
RAPGEF1-202ENST00000372190 ARID4BQ4LE39 1312 aaPredicted RBP18.99■□□□□ 0.63
RAPGEF1-202ENST00000372190 PLEKHD1A6NEE1 506 aa18.98■□□□□ 0.63
RAPGEF1-202ENST00000372190 TRHP20396 242 aaPredicted RBP18.97■□□□□ 0.63
RAPGEF1-202ENST00000372190 WRNQ14191 1432 aaPredicted RBP eCLIP18.94■□□□□ 0.629e-6■■■■■ 50.1
RAPGEF1-202ENST00000372190 DCAF1Q9Y4B6 1507 aa18.94■□□□□ 0.62
RAPGEF1-202ENST00000372190 CANXP27824 592 aaKnown RBP18.91■□□□□ 0.62
RAPGEF1-202ENST00000372190 KIF27Q86VH2 1401 aa18.9■□□□□ 0.62
RAPGEF1-202ENST00000372190 ERICH6BQ5W0A0 696 aa18.89■□□□□ 0.62
RAPGEF1-202ENST00000372190 UPF2Q9HAU5 1272 aaKnown RBP18.89■□□□□ 0.62
RAPGEF1-202ENST00000372190 ARXQ96QS3 562 aa18.86■□□□□ 0.61
RAPGEF1-202ENST00000372190 BCL11AQ9H165 835 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms