Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 HNRNPU-208ENST00000475997 5290 ntTSL 56.22□□□□□ -1.416e-7■□□□□ 10.1
SMNDC1O75940 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.526e-16■□□□□ 10.1
SMNDC1O75940 HNRNPU-230ENST00000640657 4323 ntTSL 55.34□□□□□ -1.556e-7■□□□□ 10.1
SMNDC1O75940 HNRNPU-203ENST00000366527 12852 ntTSL 24.01□□□□□ -1.776e-7■□□□□ 10.1
SMNDC1O75940 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.896e-16■□□□□ 10.1
SMNDC1O75940 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.221e-7■□□□□ 10
SMNDC1O75940 DENND5A-214ENST00000531747 915 ntTSL 311.79□□□□□ -0.521e-7■□□□□ 10
SMNDC1O75940 DENND5A-210ENST00000530044 4060 ntTSL 2 BASIC10.45□□□□□ -0.741e-7■□□□□ 10
SMNDC1O75940 DENND5A-209ENST00000529977 2606 ntTSL 210.2□□□□□ -0.781e-7■□□□□ 10
SMNDC1O75940 DENND5A-203ENST00000525784 782 ntTSL 39.8□□□□□ -0.841e-7■□□□□ 10
SMNDC1O75940 DENND5A-206ENST00000527700 3593 ntTSL 27.99□□□□□ -1.131e-7■□□□□ 10
SMNDC1O75940 DENND5A-202ENST00000524446 566 ntTSL 45.52□□□□□ -1.531e-7■□□□□ 10
SMNDC1O75940 SOD1-203ENST00000470944 1746 ntTSL 225.49■■□□□ 1.679e-11■□□□□ 10
SMNDC1O75940 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.29e-11■□□□□ 10
SMNDC1O75940 SOD1-204ENST00000476106 586 ntTSL 512.28□□□□□ -0.449e-11■□□□□ 10
SMNDC1O75940 SOD1-202ENST00000389995 865 ntTSL 3 BASIC10.73□□□□□ -0.699e-11■□□□□ 10
SMNDC1O75940 PTP4A1-203ENST00000473334 638 ntTSL 320.24■□□□□ 0.835e-7■□□□□ 10
SMNDC1O75940 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.425e-7■□□□□ 10
SMNDC1O75940 MLLT6-208ENST00000619356 3868 ntTSL 1 (best)15.46■□□□□ 0.075e-7■□□□□ 10
SMNDC1O75940 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.065e-7■□□□□ 10
SMNDC1O75940 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.025e-7■□□□□ 10
SMNDC1O75940 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.055e-7■□□□□ 10
SMNDC1O75940 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC14.41□□□□□ -0.15e-7■□□□□ 10
SMNDC1O75940 SAFB2-211ENST00000592599 2260 ntTSL 213.25□□□□□ -0.295e-7■□□□□ 10
SMNDC1O75940 SAFB2-209ENST00000591123 836 ntTSL 510.5□□□□□ -0.735e-7■□□□□ 10
SMNDC1O75940 PTP4A1-202ENST00000470661 479 ntTSL 29.65□□□□□ -0.865e-7■□□□□ 10
SMNDC1O75940 PCM1-212ENST00000519253 6443 ntTSL 1 (best) BASIC8.92□□□□□ -0.985e-7■□□□□ 10
SMNDC1O75940 PCM1-223ENST00000524356 577 ntTSL 28.38□□□□□ -1.075e-7■□□□□ 10
SMNDC1O75940 PCM1-207ENST00000518762 546 ntTSL 45.01□□□□□ -1.615e-7■□□□□ 10
SMNDC1O75940 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC3.87□□□□□ -1.795e-7■□□□□ 10
SMNDC1O75940 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.56□□□□□ -25e-7■□□□□ 10
SMNDC1O75940 PRPF8-216ENST00000577001 3274 ntTSL 515.3■□□□□ 0.046e-8■□□□□ 10
SMNDC1O75940 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.116e-8■□□□□ 10
SMNDC1O75940 PRPF8-208ENST00000573716 542 ntTSL 211.12□□□□□ -0.636e-8■□□□□ 10
SMNDC1O75940 PRPF8-201ENST00000304992 7295 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.766e-8■□□□□ 10
SMNDC1O75940 ACTN4-206ENST00000489451 654 ntTSL 310.58□□□□□ -0.723e-9■□□□□ 10
SMNDC1O75940 MED13L-201ENST00000281928 14234 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.133e-9■□□□□ 10
SMNDC1O75940 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.36■□□□□ 0.853e-9■□□□□ 10
SMNDC1O75940 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.05■□□□□ 0.163e-9■□□□□ 10
SMNDC1O75940 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.023e-9■□□□□ 10
SMNDC1O75940 TCP1-211ENST00000539756 780 ntTSL 313.47□□□□□ -0.253e-9■□□□□ 10
SMNDC1O75940 TCP1-215ENST00000544255 1403 ntTSL 5 BASIC11.71□□□□□ -0.533e-9■□□□□ 10
SMNDC1O75940 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.36■□□□□ 0.693e-6■□□□□ 10
SMNDC1O75940 NARF-205ENST00000412079 1760 ntTSL 5 BASIC18.93■□□□□ 0.623e-6■□□□□ 10
SMNDC1O75940 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.68■□□□□ 0.423e-6■□□□□ 10
SMNDC1O75940 NARF-203ENST00000374611 1722 ntTSL 514.88□□□□□ -0.033e-6■□□□□ 10
SMNDC1O75940 NARF-218ENST00000581795 1430 ntTSL 214.84□□□□□ -0.033e-6■□□□□ 10
SMNDC1O75940 NARF-206ENST00000457415 1668 ntTSL 5 BASIC14.71□□□□□ -0.053e-6■□□□□ 10
SMNDC1O75940 NARF-208ENST00000577432 866 ntTSL 514.44□□□□□ -0.13e-6■□□□□ 10
SMNDC1O75940 NARF-209ENST00000577812 2598 ntTSL 512.97□□□□□ -0.333e-6■□□□□ 10
SMNDC1O75940 NARF-220ENST00000582907 1454 ntTSL 512.65□□□□□ -0.383e-6■□□□□ 10
SMNDC1O75940 NARF-201ENST00000309794 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.463e-6■□□□□ 10
SMNDC1O75940 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21■□□□□ 0.956e-8■□□□□ 10
SMNDC1O75940 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.816e-8■□□□□ 10
SMNDC1O75940 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC19.07■□□□□ 0.646e-8■□□□□ 10
SMNDC1O75940 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.14■□□□□ 0.496e-8■□□□□ 10
SMNDC1O75940 OBSL1-209ENST00000465589 571 ntTSL 317.22■□□□□ 0.356e-8■□□□□ 10
SMNDC1O75940 OBSL1-212ENST00000491370 584 ntTSL 416.59■□□□□ 0.256e-8■□□□□ 10
SMNDC1O75940 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC15.85■□□□□ 0.136e-8■□□□□ 10
SMNDC1O75940 BAZ2A-201ENST00000379441 8831 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.522e-12■□□□□ 10
SMNDC1O75940 BAZ2A-211ENST00000549884 6050 ntAPPRIS ALT2 TSL 2 BASIC10.91□□□□□ -0.662e-12■□□□□ 10
SMNDC1O75940 BAZ2A-214ENST00000551812 8600 ntAPPRIS P3 TSL 1 (best) BASIC10.19□□□□□ -0.782e-12■□□□□ 10
SMNDC1O75940 BAZ2A-204ENST00000547647 570 ntTSL 27.71□□□□□ -1.182e-12■□□□□ 10
SMNDC1O75940 HNRNPDL-205ENST00000514511 1143 ntTSL 214.52□□□□□ -0.098e-16■□□□□ 10
SMNDC1O75940 CROCCP2-201ENST00000362058 2029 ntTSL 224.68■■□□□ 1.543e-8■□□□□ 9.9
SMNDC1O75940 CROCCP2-203ENST00000635081 1904 ntTSL 520.05■□□□□ 0.83e-8■□□□□ 9.9
SMNDC1O75940 CROCCP2-204ENST00000639456 2575 ntTSL 518.58■□□□□ 0.573e-8■□□□□ 9.9
SMNDC1O75940 CROCCP2-202ENST00000412962 2773 ntBASIC17.66■□□□□ 0.423e-8■□□□□ 9.9
SMNDC1O75940 CD46-206ENST00000360212 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC9.49□□□□□ -0.892e-8■□□□□ 9.9
SMNDC1O75940 CD46-209ENST00000367047 3089 ntTSL 5 BASIC9.47□□□□□ -0.892e-8■□□□□ 9.9
SMNDC1O75940 CD46-202ENST00000322918 3124 ntAPPRIS ALT2 TSL 1 (best) BASIC9.18□□□□□ -0.942e-8■□□□□ 9.9
SMNDC1O75940 CD46-203ENST00000354848 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC8.73□□□□□ -1.012e-8■□□□□ 9.9
SMNDC1O75940 CD46-201ENST00000322875 3278 ntAPPRIS P4 TSL 1 (best) BASIC8.65□□□□□ -1.032e-8■□□□□ 9.9
SMNDC1O75940 CD46-207ENST00000367041 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC8.65□□□□□ -1.032e-8■□□□□ 9.9
SMNDC1O75940 CD46-208ENST00000367042 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC8.64□□□□□ -1.032e-8■□□□□ 9.9
SMNDC1O75940 CD46-205ENST00000358170 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC8.45□□□□□ -1.062e-8■□□□□ 9.9
SMNDC1O75940 CD46-214ENST00000480003 1258 ntAPPRIS ALT2 TSL 5 BASIC8.43□□□□□ -1.062e-8■□□□□ 9.9
SMNDC1O75940 CD46-204ENST00000357714 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC8.26□□□□□ -1.092e-8■□□□□ 9.9
SMNDC1O75940 CD46-218ENST00000496723 661 ntTSL 57.47□□□□□ -1.212e-8■□□□□ 9.9
SMNDC1O75940 CD46-212ENST00000469535 7826 ntTSL 1 (best)7.16□□□□□ -1.262e-8■□□□□ 9.9
SMNDC1O75940 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC24.61■■□□□ 1.532e-8■□□□□ 9.9
SMNDC1O75940 CHPT1-210ENST00000552351 1524 ntTSL 224■■□□□ 1.432e-8■□□□□ 9.9
SMNDC1O75940 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.332e-8■□□□□ 9.9
SMNDC1O75940 CHPT1-204ENST00000549128 1552 ntTSL 523.35■■□□□ 1.332e-8■□□□□ 9.9
SMNDC1O75940 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.73■□□□□ 0.592e-8■□□□□ 9.9
SMNDC1O75940 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.52e-8■□□□□ 9.9
SMNDC1O75940 TRPM4-210ENST00000598691 594 ntTSL 518.16■□□□□ 0.52e-8■□□□□ 9.9
SMNDC1O75940 TRPM4-211ENST00000598697 3349 ntTSL 217.09■□□□□ 0.332e-8■□□□□ 9.9
SMNDC1O75940 SCART1-201ENST00000462252 3451 ntTSL 216.98■□□□□ 0.314e-6■□□□□ 9.9
SMNDC1O75940 TRPM4-209ENST00000598502 3695 ntTSL 1 (best)16.73■□□□□ 0.272e-8■□□□□ 9.9
SMNDC1O75940 TRPM4-205ENST00000595519 3702 ntTSL 1 (best)16.03■□□□□ 0.162e-8■□□□□ 9.9
SMNDC1O75940 TRPM4-207ENST00000596338 3993 ntTSL 215.07■□□□□ 02e-8■□□□□ 9.9
SMNDC1O75940 TRPM4-203ENST00000594568 532 ntTSL 414.84□□□□□ -0.032e-8■□□□□ 9.9
SMNDC1O75940 TRPM4-201ENST00000252826 4109 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.152e-8■□□□□ 9.9
SMNDC1O75940 TRPM4-202ENST00000427978 3444 ntTSL 1 (best) BASIC13.86□□□□□ -0.192e-8■□□□□ 9.9
SMNDC1O75940 CHPT1-209ENST00000552329 580 ntTSL 411.08□□□□□ -0.642e-8■□□□□ 9.9
SMNDC1O75940 ADGRV1-235ENST00000640729 1360 ntTSL 58.01□□□□□ -1.132e-8■□□□□ 9.9
SMNDC1O75940 TP53BP2-214ENST00000498843 2781 ntTSL 27.92□□□□□ -1.142e-8■□□□□ 9.9
SMNDC1O75940 TP53BP2-209ENST00000483398 1841 ntTSL 27.78□□□□□ -1.162e-8■□□□□ 9.9
SMNDC1O75940 CHPT1-208ENST00000552215 4342 ntTSL 1 (best)7.76□□□□□ -1.172e-8■□□□□ 9.9
Retrieved 100 of 11,362 protein–RNA pairs in 163.2 ms