RNA–Protein interactions for RNA: ENST00000322918.9

CD46-202, Transcript of CD46 molecule, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD46, Length 3,124 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-202ENST00000322918 NISCHQ9Y2I1 1504 aa19.82■□□□□ 0.76
CD46-202ENST00000322918 DCAF8L2P0C7V8 631 aa17.07■□□□□ 0.32
CD46-202ENST00000322918 CCDC180Q9P1Z9 1646 aa16.92■□□□□ 0.3
CD46-202ENST00000322918 SHROOM4Q9ULL8 1493 aa16.9■□□□□ 0.3
CD46-202ENST00000322918 ZCCHC6Q5VYS8 1495 aaKnown RBP16.62■□□□□ 0.25
CD46-202ENST00000322918 ABCC9O60706 1549 aa16.48■□□□□ 0.23
CD46-202ENST00000322918 SUPT5HO00267 1087 aaKnown RBP16.35■□□□□ 0.21
CD46-202ENST00000322918 DCAF1Q9Y4B6 1507 aa16.09■□□□□ 0.17
CD46-202ENST00000322918 SCRIBQ14160 1630 aa16.04■□□□□ 0.16
CD46-202ENST00000322918 NACADO15069 1562 aa15.85■□□□□ 0.13
CD46-202ENST00000322918 MYO15BQ96JP2 1530 aa15.78■□□□□ 0.12
CD46-202ENST00000322918 PABPN1Q86U42 306 aaKnown RBP eCLIP15.77■□□□□ 0.11
CD46-202ENST00000322918 RB1CC1Q8TDY2 1594 aa15.76■□□□□ 0.11
CD46-202ENST00000322918 CECR2Q9BXF3 1484 aa15.61■□□□□ 0.09
CD46-202ENST00000322918 RSF1Q96T23 1441 aaPredicted RBP15.55■□□□□ 0.08
CD46-202ENST00000322918 CHIC1Q5VXU3 224 aa15.46■□□□□ 0.06
CD46-202ENST00000322918 MROH2BQ7Z745 1585 aa15.45■□□□□ 0.06
CD46-202ENST00000322918 UNC13AQ9UPW8 1703 aa15.44■□□□□ 0.06
CD46-202ENST00000322918 WIZO95785 1651 aa15.33■□□□□ 0.04
CD46-202ENST00000322918 BICRAQ9NZM4 1560 aa15.32■□□□□ 0.04
CD46-202ENST00000322918 BAZ1AQ9NRL2 1556 aaPredicted RBP15.25■□□□□ 0.03
CD46-202ENST00000322918 EHMT2Q96KQ7 1210 aa15.22■□□□□ 0.03
CD46-202ENST00000322918 FAM9AQ8IZU1 332 aaPredicted RBP15.19■□□□□ 0.02
CD46-202ENST00000322918 SMARCA4P51532 1647 aa15.18■□□□□ 0.02
CD46-202ENST00000322918 TRIM41Q8WV44 630 aa15.17■□□□□ 0.02
CD46-202ENST00000322918 LOC105371045A0A1W2PR82 267 aa15.12■□□□□ 0.01
CD46-202ENST00000322918 CCDC88BA6NC98 1476 aa15.02■□□□□ -0
CD46-202ENST00000322918 TOP2AP11388 1531 aaKnown RBP15□□□□□ -0.01
CD46-202ENST00000322918 ATAD2BQ9ULI0 1458 aa14.97□□□□□ -0.01
CD46-202ENST00000322918 BAZ1BQ9UIG0 1483 aaKnown RBP14.95□□□□□ -0.02
CD46-202ENST00000322918 SMARCA2P51531 1590 aa14.92□□□□□ -0.02
CD46-202ENST00000322918 EIF4G1Q04637 1599 aaKnown RBP14.9□□□□□ -0.02
CD46-202ENST00000322918 ABCC8Q09428 1581 aa14.88□□□□□ -0.03
CD46-202ENST00000322918 PEG3Q9GZU2 1588 aa14.79□□□□□ -0.04
CD46-202ENST00000322918 NCAPD3P42695 1498 aa14.71□□□□□ -0.05
CD46-202ENST00000322918 DNAJC5BQ9UF47 199 aa14.71□□□□□ -0.05
CD46-202ENST00000322918 CC2D2AQ9P2K1 1620 aa14.69□□□□□ -0.06
CD46-202ENST00000322918 SOGA1O94964 1423 aa14.66□□□□□ -0.06
CD46-202ENST00000322918 WRNQ14191 1432 aaPredicted RBP eCLIP14.66□□□□□ -0.06
CD46-202ENST00000322918 RANGAP1P46060 587 aaPredicted RBP14.63□□□□□ -0.07
CD46-202ENST00000322918 PPARGC1BQ86YN6 1023 aaKnown RBP14.62□□□□□ -0.07
CD46-202ENST00000322918 RUSC2Q8N2Y8 1516 aa14.61□□□□□ -0.07
CD46-202ENST00000322918 PCGF6Q9BYE7 350 aa14.61□□□□□ -0.07
CD46-202ENST00000322918 HMGXB3Q12766 1538 aa14.61□□□□□ -0.07
CD46-202ENST00000322918 UBTFP17480 764 aaKnown RBP14.59□□□□□ -0.07
CD46-202ENST00000322918 TTBK1Q5TCY1 1321 aaPredicted RBP14.56□□□□□ -0.08
CD46-202ENST00000322918 SYNJ1O43426 1573 aa14.55□□□□□ -0.08
CD46-202ENST00000322918 CSRNP3Q8WYN3 585 aa14.54□□□□□ -0.08
CD46-202ENST00000322918 NESP48681 1621 aa14.49□□□□□ -0.09
CD46-202ENST00000322918 CADPSQ9ULU8 1353 aa14.48□□□□□ -0.09
CD46-202ENST00000322918 CFTRP13569 1480 aa14.47□□□□□ -0.09
CD46-202ENST00000322918 CUX1P39880 1505 aa14.39□□□□□ -0.11
CD46-202ENST00000322918 FANCD2Q9BXW9 1451 aa14.35□□□□□ -0.11
CD46-202ENST00000322918 TOP2BQ02880 1626 aa14.34□□□□□ -0.11
CD46-202ENST00000322918 EEA1Q15075 1411 aa14.31□□□□□ -0.12
CD46-202ENST00000322918 CEP162Q5TB80 1403 aa14.31□□□□□ -0.12
CD46-202ENST00000322918 RAPGEF2Q9Y4G8 1499 aa14.29□□□□□ -0.12
CD46-202ENST00000322918 TRIM26Q12899 539 aaPredicted RBP14.29□□□□□ -0.12
CD46-202ENST00000322918 GOLGA3Q08378 1498 aa14.28□□□□□ -0.12
CD46-202ENST00000322918 CUX2O14529 1486 aa14.27□□□□□ -0.13
CD46-202ENST00000322918 FGD5Q6ZNL6 1462 aa14.26□□□□□ -0.13
CD46-202ENST00000322918 TNIKQ9UKE5 1360 aa14.26□□□□□ -0.13
CD46-202ENST00000322918 RAD54L2Q9Y4B4 1467 aa14.25□□□□□ -0.13
CD46-202ENST00000322918 KIF27Q86VH2 1401 aa14.24□□□□□ -0.13
CD46-202ENST00000322918 CEP164Q9UPV0 1460 aa14.24□□□□□ -0.13
CD46-202ENST00000322918 BIVM-ERCC5R4GMW8 1640 aa14.24□□□□□ -0.13
CD46-202ENST00000322918 PDS5BQ9NTI5 1447 aa14.19□□□□□ -0.14
CD46-202ENST00000322918 TDRD9Q8NDG6 1382 aaKnown RBP14.18□□□□□ -0.14
CD46-202ENST00000322918 CLIP1P30622 1438 aa14.17□□□□□ -0.14
CD46-202ENST00000322918 TOPBP1Q92547 1522 aa14.17□□□□□ -0.14
CD46-202ENST00000322918 P3H3Q8IVL6 736 aa14.16□□□□□ -0.14
CD46-202ENST00000322918 PRDM2Q13029 1718 aa14.15□□□□□ -0.14
CD46-202ENST00000322918 URB2Q14146 1524 aaKnown RBP14.15□□□□□ -0.14
CD46-202ENST00000322918 POLA1P09884 1462 aaPredicted RBP14.15□□□□□ -0.14
CD46-202ENST00000322918 LAMC3Q9Y6N6 1575 aa14.14□□□□□ -0.15
CD46-202ENST00000322918 IGF1RP08069 1367 aa14.14□□□□□ -0.15
CD46-202ENST00000322918 APLP2Q06481 763 aa14.12□□□□□ -0.15
CD46-202ENST00000322918 HRCP23327 699 aa14.12□□□□□ -0.15
CD46-202ENST00000322918 ATP1B4Q9UN42 357 aaPredicted RBP14.12□□□□□ -0.15
CD46-202ENST00000322918 CARMIL1Q5VZK9 1371 aa14.11□□□□□ -0.15
CD46-202ENST00000322918 KIF21BO75037 1637 aa14.11□□□□□ -0.15
CD46-202ENST00000322918 KIF21AQ7Z4S6 1674 aa14.1□□□□□ -0.15
CD46-202ENST00000322918 DNMBPQ6XZF7 1577 aa14.1□□□□□ -0.15
CD46-202ENST00000322918 PRXQ9BXM0 1461 aa14.1□□□□□ -0.15
CD46-202ENST00000322918 ERCC6Q03468 1493 aa14.08□□□□□ -0.16
CD46-202ENST00000322918 AQRO60306 1485 aaKnown RBP eCLIP14.01□□□□□ -0.175e-23■■■■■ 36
CD46-202ENST00000322918 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.99□□□□□ -0.17
CD46-202ENST00000322918 FBLN2P98095 1184 aa13.99□□□□□ -0.17
CD46-202ENST00000322918 HNRNPUL2Q1KMD3 747 aaKnown RBP13.99□□□□□ -0.17
CD46-202ENST00000322918 ABCA10Q8WWZ4 1543 aa13.99□□□□□ -0.17
CD46-202ENST00000322918 ERICH3Q5RHP9 1530 aa13.98□□□□□ -0.17
CD46-202ENST00000322918 VPS8Q8N3P4 1428 aa13.97□□□□□ -0.17
CD46-202ENST00000322918 GAPVD1Q14C86 1478 aa13.97□□□□□ -0.17
CD46-202ENST00000322918 MRC2Q9UBG0 1479 aa13.96□□□□□ -0.17
CD46-202ENST00000322918 ARAP1Q96P48 1450 aa13.96□□□□□ -0.18
CD46-202ENST00000322918 KANK4Q5T7N3 995 aaPredicted RBP13.95□□□□□ -0.18
CD46-202ENST00000322918 ARID3CA6NKF2 412 aa13.93□□□□□ -0.18
CD46-202ENST00000322918 ZNF608Q9ULD9 1512 aaPredicted RBP13.92□□□□□ -0.18
CD46-202ENST00000322918 ARHGAP35Q9NRY4 1499 aa13.91□□□□□ -0.18
CD46-202ENST00000322918 ITGAEP38570 1179 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms