RNA–Protein interactions for RNA: ENST00000473334.1

PTP4A1-203, Transcript of protein tyrosine phosphatase type IVA, member 1, humanhuman

TSL 3

Gene PTP4A1, Length 638 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1-203ENST00000473334 NISCHQ9Y2I1 1504 aa55.52■■■■■ 6.48
PTP4A1-203ENST00000473334 CCDC180Q9P1Z9 1646 aa49.6■■■■■ 5.53
PTP4A1-203ENST00000473334 ABCC9O60706 1549 aa48.83■■■■■ 5.41
PTP4A1-203ENST00000473334 RB1CC1Q8TDY2 1594 aa46.85■■■■■ 5.09
PTP4A1-203ENST00000473334 NACADO15069 1562 aa46.69■■■■■ 5.06
PTP4A1-203ENST00000473334 DCAF8L2P0C7V8 631 aa46.47■■■■■ 5.03
PTP4A1-203ENST00000473334 MYO15BQ96JP2 1530 aa46.28■■■■■ 5
PTP4A1-203ENST00000473334 ZCCHC6Q5VYS8 1495 aaKnown RBP46.18■■■■■ 4.98
PTP4A1-203ENST00000473334 DCAF1Q9Y4B6 1507 aa45.94■■■■■ 4.95
PTP4A1-203ENST00000473334 UNC13AQ9UPW8 1703 aa45.82■■■■■ 4.93
PTP4A1-203ENST00000473334 PABPN1Q86U42 306 aaKnown RBP eCLIP45.53■■■■■ 4.88
PTP4A1-203ENST00000473334 BICRAQ9NZM4 1560 aa45.44■■■■■ 4.86
PTP4A1-203ENST00000473334 SCRIBQ14160 1630 aa45.19■■■■■ 4.82
PTP4A1-203ENST00000473334 DNAJC5BQ9UF47 199 aa45.14■■■■■ 4.82
PTP4A1-203ENST00000473334 SHROOM4Q9ULL8 1493 aa44.95■■■■■ 4.79
PTP4A1-203ENST00000473334 EIF4G1Q04637 1599 aaKnown RBP44.27■■■■■ 4.68
PTP4A1-203ENST00000473334 CC2D2AQ9P2K1 1620 aa44.18■■■■■ 4.66
PTP4A1-203ENST00000473334 CECR2Q9BXF3 1484 aa43.93■■■■■ 4.62
PTP4A1-203ENST00000473334 SMARCA4P51532 1647 aa43.19■■■■■ 4.51
PTP4A1-203ENST00000473334 BAZ1AQ9NRL2 1556 aaPredicted RBP43.07■■■■■ 4.49
PTP4A1-203ENST00000473334 NCAPD3P42695 1498 aa43.06■■■■■ 4.48
PTP4A1-203ENST00000473334 ATAD2BQ9ULI0 1458 aa43.02■■■■■ 4.48
PTP4A1-203ENST00000473334 SMARCA2P51531 1590 aa42.98■■■■■ 4.47
PTP4A1-203ENST00000473334 HMGXB3Q12766 1538 aa42.85■■■■■ 4.45
PTP4A1-203ENST00000473334 MROH2BQ7Z745 1585 aa42.78■■■■■ 4.44
PTP4A1-203ENST00000473334 PEG3Q9GZU2 1588 aa42.78■■■■■ 4.44
PTP4A1-203ENST00000473334 BAZ1BQ9UIG0 1483 aaKnown RBP42.67■■■■■ 4.42
PTP4A1-203ENST00000473334 WIZO95785 1651 aa42.31■■■■■ 4.36
PTP4A1-203ENST00000473334 NESP48681 1621 aa42.15■■■■■ 4.34
PTP4A1-203ENST00000473334 ERCC6Q03468 1493 aa42.14■■■■■ 4.34
PTP4A1-203ENST00000473334 RSF1Q96T23 1441 aaPredicted RBP42.12■■■■■ 4.33
PTP4A1-203ENST00000473334 LAMC3Q9Y6N6 1575 aa42.03■■■■■ 4.32
PTP4A1-203ENST00000473334 CUX2O14529 1486 aa41.85■■■■■ 4.29
PTP4A1-203ENST00000473334 TOP2AP11388 1531 aaKnown RBP41.85■■■■■ 4.29
PTP4A1-203ENST00000473334 CADPSQ9ULU8 1353 aa41.77■■■■■ 4.28
PTP4A1-203ENST00000473334 PDS5BQ9NTI5 1447 aa41.72■■■■■ 4.27
PTP4A1-203ENST00000473334 KIF21AQ7Z4S6 1674 aa41.69■■■■■ 4.26
PTP4A1-203ENST00000473334 THOC2Q8NI27 1593 aaKnown RBP41.65■■■■■ 4.26
PTP4A1-203ENST00000473334 CFTRP13569 1480 aa41.46■■■■■ 4.23
PTP4A1-203ENST00000473334 MRC2Q9UBG0 1479 aa41.34■■■■■ 4.21
PTP4A1-203ENST00000473334 CCDC88BA6NC98 1476 aa41.32■■■■■ 4.2
PTP4A1-203ENST00000473334 FANCD2Q9BXW9 1451 aa41.31■■■■■ 4.2
PTP4A1-203ENST00000473334 CEP164Q9UPV0 1460 aa41.31■■■■■ 4.2
PTP4A1-203ENST00000473334 WDR62O43379 1518 aa41.23■■■■■ 4.19
PTP4A1-203ENST00000473334 PRDM2Q13029 1718 aa41.2■■■■■ 4.19
PTP4A1-203ENST00000473334 DNAJC5Q9H3Z4 198 aa40.98■■■■■ 4.15
PTP4A1-203ENST00000473334 URB2Q14146 1524 aaKnown RBP40.93■■■■■ 4.14
PTP4A1-203ENST00000473334 SUPT5HO00267 1087 aaKnown RBP40.72■■■■■ 4.11
PTP4A1-203ENST00000473334 TOPBP1Q92547 1522 aa40.62■■■■■ 4.09
PTP4A1-203ENST00000473334 ABCC8Q09428 1581 aa40.6■■■■■ 4.09
PTP4A1-203ENST00000473334 DNMBPQ6XZF7 1577 aa40.55■■■■■ 4.08
PTP4A1-203ENST00000473334 IFT140Q96RY7 1462 aa40.46■■■■■ 4.07
PTP4A1-203ENST00000473334 ZNF608Q9ULD9 1512 aaPredicted RBP40.29■■■■■ 4.04
PTP4A1-203ENST00000473334 POLA1P09884 1462 aaPredicted RBP40.24■■■■■ 4.03
PTP4A1-203ENST00000473334 TARBP1Q13395 1621 aaKnown RBP40.22■■■■■ 4.03
PTP4A1-203ENST00000473334 EIF4G3O43432 1585 aaKnown RBP40.17■■■■■ 4.02
PTP4A1-203ENST00000473334 CUX1P39880 1505 aa40.16■■■■■ 4.02
PTP4A1-203ENST00000473334 FGD5Q6ZNL6 1462 aa40.09■■■■■ 4.01
PTP4A1-203ENST00000473334 RAD54L2Q9Y4B4 1467 aa40.06■■■■■ 4
PTP4A1-203ENST00000473334 SOGA1O94964 1423 aa40.05■■■■■ 4
PTP4A1-203ENST00000473334 AQRO60306 1485 aaKnown RBP eCLIP40■■■■□ 3.99
PTP4A1-203ENST00000473334 OSCARQ8IYS5 282 aa40■■■■□ 3.99
PTP4A1-203ENST00000473334 WDR97A6NE52 1622 aa39.91■■■■□ 3.98
PTP4A1-203ENST00000473334 TDRD9Q8NDG6 1382 aaKnown RBP39.85■■■■□ 3.97
PTP4A1-203ENST00000473334 CHD1O14646 1710 aa39.75■■■■□ 3.95
PTP4A1-203ENST00000473334 BIVM-ERCC5R4GMW8 1640 aa39.75■■■■□ 3.95
PTP4A1-203ENST00000473334 WRNQ14191 1432 aaPredicted RBP eCLIP39.74■■■■□ 3.95
PTP4A1-203ENST00000473334 TOP2BQ02880 1626 aa39.73■■■■□ 3.95
PTP4A1-203ENST00000473334 SYNJ1O43426 1573 aa39.69■■■■□ 3.94
PTP4A1-203ENST00000473334 ABCA10Q8WWZ4 1543 aa39.68■■■■□ 3.94
PTP4A1-203ENST00000473334 SNAPC4Q5SXM2 1469 aa39.66■■■■□ 3.94
PTP4A1-203ENST00000473334 GRIN2BQ13224 1484 aa39.65■■■■□ 3.94
PTP4A1-203ENST00000473334 GAPVD1Q14C86 1478 aa39.6■■■■□ 3.93
PTP4A1-203ENST00000473334 MAGI1Q96QZ7 1491 aaPredicted RBP39.6■■■■□ 3.93
PTP4A1-203ENST00000473334 PBRM1Q86U86 1689 aa39.6■■■■□ 3.93
PTP4A1-203ENST00000473334 ABCA5Q8WWZ7 1642 aa39.58■■■■□ 3.93
PTP4A1-203ENST00000473334 FBLN2P98095 1184 aa39.58■■■■□ 3.93
PTP4A1-203ENST00000473334 RIMBP3CA6NJZ7 1639 aa39.47■■■■□ 3.91
PTP4A1-203ENST00000473334 RIMBP3BA6NNM3 1639 aa39.47■■■■□ 3.91
PTP4A1-203ENST00000473334 RIMBP3Q9UFD9 1639 aa39.47■■■■□ 3.91
PTP4A1-203ENST00000473334 TRIM41Q8WV44 630 aa39.46■■■■□ 3.91
PTP4A1-203ENST00000473334 SYNJ2O15056 1496 aa39.44■■■■□ 3.9
PTP4A1-203ENST00000473334 CHMP7Q8WUX9 453 aaPredicted RBP39.42■■■■□ 3.9
PTP4A1-203ENST00000473334 ARHGEF11O15085 1522 aa39.4■■■■□ 3.9
PTP4A1-203ENST00000473334 CLASP1Q7Z460 1538 aa39.29■■■■□ 3.88
PTP4A1-203ENST00000473334 ADAMTS12P58397 1594 aa39.24■■■■□ 3.87
PTP4A1-203ENST00000473334 ERICH3Q5RHP9 1530 aa39.21■■■■□ 3.87
PTP4A1-203ENST00000473334 GRIN2AQ12879 1464 aa39.14■■■■□ 3.86
PTP4A1-203ENST00000473334 FHAD1B1AJZ9 1412 aa39.13■■■■□ 3.85
PTP4A1-203ENST00000473334 ARAP1Q96P48 1450 aa39.05■■■■□ 3.84
PTP4A1-203ENST00000473334 CYB5RLQ6IPT4 315 aa39■■■■□ 3.83
PTP4A1-203ENST00000473334 NUP160Q12769 1436 aa38.98■■■■□ 3.83
PTP4A1-203ENST00000473334 CEP170Q5SW79 1584 aa38.98■■■■□ 3.83
PTP4A1-203ENST00000473334 KIF27Q86VH2 1401 aa38.95■■■■□ 3.83
PTP4A1-203ENST00000473334 IGF1RP08069 1367 aa38.81■■■■□ 3.8
PTP4A1-203ENST00000473334 CUL7Q14999 1698 aa38.81■■■■□ 3.8
PTP4A1-203ENST00000473334 SHROOM2Q13796 1616 aa38.76■■■■□ 3.8
PTP4A1-203ENST00000473334 ERCC6L2Q5T890 1561 aa38.7■■■■□ 3.79
PTP4A1-203ENST00000473334 RUSC2Q8N2Y8 1516 aa38.67■■■■□ 3.78
PTP4A1-203ENST00000473334 CARMIL1Q5VZK9 1371 aa38.58■■■■□ 3.77
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms