RNA–Protein interactions for RNA: ENST00000367042.5

CD46-208, Transcript of CD46 molecule, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD46, Length 3,326 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-208ENST00000367042 NISCHQ9Y2I1 1504 aa16.26■□□□□ 0.19
CD46-208ENST00000367042 SHROOM4Q9ULL8 1493 aa14.19□□□□□ -0.14
CD46-208ENST00000367042 SUPT5HO00267 1087 aaKnown RBP14.08□□□□□ -0.16
CD46-208ENST00000367042 CCDC180Q9P1Z9 1646 aa14.04□□□□□ -0.16
CD46-208ENST00000367042 DCAF8L2P0C7V8 631 aa13.79□□□□□ -0.2
CD46-208ENST00000367042 ZCCHC6Q5VYS8 1495 aaKnown RBP13.72□□□□□ -0.21
CD46-208ENST00000367042 PCGF6Q9BYE7 350 aa13.59□□□□□ -0.23
CD46-208ENST00000367042 HRCP23327 699 aa13.52□□□□□ -0.25
CD46-208ENST00000367042 CHIC1Q5VXU3 224 aa13.5□□□□□ -0.25
CD46-208ENST00000367042 DCAF1Q9Y4B6 1507 aa13.43□□□□□ -0.26
CD46-208ENST00000367042 PPARGC1BQ86YN6 1023 aaKnown RBP13.41□□□□□ -0.26
CD46-208ENST00000367042 MYO15BQ96JP2 1530 aa13.41□□□□□ -0.26
CD46-208ENST00000367042 LOC105371045A0A1W2PR82 267 aa13.31□□□□□ -0.28
CD46-208ENST00000367042 EHMT2Q96KQ7 1210 aa13.18□□□□□ -0.3
CD46-208ENST00000367042 FAM9AQ8IZU1 332 aaPredicted RBP13.09□□□□□ -0.31
CD46-208ENST00000367042 ABCC9O60706 1549 aa13.07□□□□□ -0.32
CD46-208ENST00000367042 TRIM26Q12899 539 aaPredicted RBP13.06□□□□□ -0.32
CD46-208ENST00000367042 NACADO15069 1562 aa13□□□□□ -0.33
CD46-208ENST00000367042 SCRIBQ14160 1630 aa12.97□□□□□ -0.33
CD46-208ENST00000367042 TRIM41Q8WV44 630 aa12.96□□□□□ -0.33
CD46-208ENST00000367042 ZEB1P37275 1124 aaPredicted RBP12.85□□□□□ -0.35
CD46-208ENST00000367042 RB1CC1Q8TDY2 1594 aa12.83□□□□□ -0.36
CD46-208ENST00000367042 TTBK1Q5TCY1 1321 aaPredicted RBP12.78□□□□□ -0.36
CD46-208ENST00000367042 RSF1Q96T23 1441 aaPredicted RBP12.72□□□□□ -0.37
CD46-208ENST00000367042 UNC13AQ9UPW8 1703 aa12.7□□□□□ -0.38
CD46-208ENST00000367042 CCER1Q8TC90 406 aaPredicted RBP12.69□□□□□ -0.38
CD46-208ENST00000367042 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.68□□□□□ -0.38
CD46-208ENST00000367042 SCAF1Q9H7N4 1312 aaKnown RBP12.67□□□□□ -0.38
CD46-208ENST00000367042 CECR2Q9BXF3 1484 aa12.65□□□□□ -0.38
CD46-208ENST00000367042 PELP1Q8IZL8 1130 aaKnown RBP12.62□□□□□ -0.39
CD46-208ENST00000367042 MROH2BQ7Z745 1585 aa12.6□□□□□ -0.39
CD46-208ENST00000367042 BICRAQ9NZM4 1560 aa12.53□□□□□ -0.4
CD46-208ENST00000367042 WIZO95785 1651 aa12.52□□□□□ -0.41
CD46-208ENST00000367042 BAZ1AQ9NRL2 1556 aaPredicted RBP12.5□□□□□ -0.41
CD46-208ENST00000367042 DIEXFQ68CQ4 756 aaKnown RBP12.48□□□□□ -0.41
CD46-208ENST00000367042 NEUROD1Q13562 356 aa12.47□□□□□ -0.41
CD46-208ENST00000367042 CENPBP07199 599 aaPredicted RBP12.46□□□□□ -0.41
CD46-208ENST00000367042 ACIN1Q9UKV3 1341 aaKnown RBP12.46□□□□□ -0.42
CD46-208ENST00000367042 YTHDC1Q96MU7 727 aaKnown RBP12.45□□□□□ -0.42
CD46-208ENST00000367042 SMARCA4P51532 1647 aa12.45□□□□□ -0.42
CD46-208ENST00000367042 GTF3C3Q9Y5Q9 886 aa12.44□□□□□ -0.42
CD46-208ENST00000367042 UBTFP17480 764 aaKnown RBP12.42□□□□□ -0.42
CD46-208ENST00000367042 PABPN1Q86U42 306 aaKnown RBP eCLIP12.38□□□□□ -0.43
CD46-208ENST00000367042 RANGAP1P46060 587 aaPredicted RBP12.36□□□□□ -0.43
CD46-208ENST00000367042 TOP2AP11388 1531 aaKnown RBP12.35□□□□□ -0.43
CD46-208ENST00000367042 EIF4G1Q04637 1599 aaKnown RBP12.32□□□□□ -0.44
CD46-208ENST00000367042 HNRNPUL2Q1KMD3 747 aaKnown RBP12.32□□□□□ -0.44
CD46-208ENST00000367042 PEG3Q9GZU2 1588 aa12.3□□□□□ -0.44
CD46-208ENST00000367042 SMARCA2P51531 1590 aa12.27□□□□□ -0.45
CD46-208ENST00000367042 CCDC88BA6NC98 1476 aa12.25□□□□□ -0.45
CD46-208ENST00000367042 ZNF316A6NFI3 1004 aaPredicted RBP12.24□□□□□ -0.45
CD46-208ENST00000367042 CEP162Q5TB80 1403 aa12.23□□□□□ -0.45
CD46-208ENST00000367042 APLP2Q06481 763 aa12.22□□□□□ -0.45
CD46-208ENST00000367042 ABCC8Q09428 1581 aa12.22□□□□□ -0.45
CD46-208ENST00000367042 CSRNP3Q8WYN3 585 aa12.21□□□□□ -0.46
CD46-208ENST00000367042 SOGA1O94964 1423 aa12.19□□□□□ -0.46
CD46-208ENST00000367042 ATAD2BQ9ULI0 1458 aa12.18□□□□□ -0.46
CD46-208ENST00000367042 MIER1Q8N108 512 aa12.16□□□□□ -0.46
CD46-208ENST00000367042 TNIKQ9UKE5 1360 aa12.1□□□□□ -0.47
CD46-208ENST00000367042 RUSC2Q8N2Y8 1516 aa12.09□□□□□ -0.47
CD46-208ENST00000367042 BAZ1BQ9UIG0 1483 aaKnown RBP12.09□□□□□ -0.47
CD46-208ENST00000367042 WRNQ14191 1432 aaPredicted RBP eCLIP12.06□□□□□ -0.48
CD46-208ENST00000367042 MYT1Q01538 1121 aa12.03□□□□□ -0.48
CD46-208ENST00000367042 HMGXB3Q12766 1538 aa12.02□□□□□ -0.48
CD46-208ENST00000367042 NCAPD3P42695 1498 aa12.02□□□□□ -0.48
CD46-208ENST00000367042 GOLGA3Q08378 1498 aa12.02□□□□□ -0.49
CD46-208ENST00000367042 ITGAEP38570 1179 aa12.01□□□□□ -0.49
CD46-208ENST00000367042 CLIP1P30622 1438 aa11.98□□□□□ -0.49
CD46-208ENST00000367042 EEA1Q15075 1411 aa11.97□□□□□ -0.49
CD46-208ENST00000367042 SYNJ1O43426 1573 aa11.92□□□□□ -0.5
CD46-208ENST00000367042 CEP164Q9UPV0 1460 aa11.9□□□□□ -0.5
CD46-208ENST00000367042 VPS8Q8N3P4 1428 aa11.86□□□□□ -0.51
CD46-208ENST00000367042 BCANQ96GW7 911 aa11.86□□□□□ -0.51
CD46-208ENST00000367042 CC2D2AQ9P2K1 1620 aa11.85□□□□□ -0.51
CD46-208ENST00000367042 RAPGEF2Q9Y4G8 1499 aa11.84□□□□□ -0.51
CD46-208ENST00000367042 CFTRP13569 1480 aa11.83□□□□□ -0.52
CD46-208ENST00000367042 TOP2BQ02880 1626 aa11.83□□□□□ -0.52
CD46-208ENST00000367042 ATP1B4Q9UN42 357 aaPredicted RBP11.83□□□□□ -0.52
CD46-208ENST00000367042 BIVM-ERCC5R4GMW8 1640 aa11.82□□□□□ -0.52
CD46-208ENST00000367042 SUPT16HQ9Y5B9 1047 aaKnown RBP11.82□□□□□ -0.52
CD46-208ENST00000367042 KANK4Q5T7N3 995 aaPredicted RBP11.81□□□□□ -0.52
CD46-208ENST00000367042 PRDM2Q13029 1718 aa11.8□□□□□ -0.52
CD46-208ENST00000367042 DHX57Q6P158 1386 aaKnown RBP11.76□□□□□ -0.53
CD46-208ENST00000367042 CUX1P39880 1505 aa11.76□□□□□ -0.53
CD46-208ENST00000367042 KCNH8Q96L42 1107 aa11.75□□□□□ -0.53
CD46-208ENST00000367042 FAM50AQ14320 339 aaKnown RBP11.73□□□□□ -0.53
CD46-208ENST00000367042 KIF21BO75037 1637 aa11.73□□□□□ -0.53
CD46-208ENST00000367042 DDX10Q13206 875 aaKnown RBP11.73□□□□□ -0.53
CD46-208ENST00000367042 HIRIP3Q9BW71 556 aaPredicted RBP11.73□□□□□ -0.53
CD46-208ENST00000367042 CADPSQ9ULU8 1353 aa11.72□□□□□ -0.53
CD46-208ENST00000367042 FKBP8Q14318 412 aa11.7□□□□□ -0.54
CD46-208ENST00000367042 CLSPNQ9HAW4 1339 aa11.7□□□□□ -0.54
CD46-208ENST00000367042 NEFLP07196 543 aa11.69□□□□□ -0.54
CD46-208ENST00000367042 P3H3Q8IVL6 736 aa11.69□□□□□ -0.54
CD46-208ENST00000367042 TSHZ2Q9NRE2 1034 aa11.67□□□□□ -0.54
CD46-208ENST00000367042 TRIM52Q96A61 297 aa11.66□□□□□ -0.54
CD46-208ENST00000367042 SIN3AQ96ST3 1273 aa11.66□□□□□ -0.54
CD46-208ENST00000367042 CCNB3Q8WWL7 1395 aa11.65□□□□□ -0.54
CD46-208ENST00000367042 PRXQ9BXM0 1461 aa11.62□□□□□ -0.55
CD46-208ENST00000367042 RAB3GAP2Q9H2M9 1393 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms