RNA–Protein interactions for RNA: ENST00000549872.5

CHPT1-205, Transcript of choline phosphotransferase 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHPT1, Length 2,001 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHPT1-205ENST00000549872 NISCHQ9Y2I1 1504 aa60.3■■■■■ 7.24
CHPT1-205ENST00000549872 CCDC180Q9P1Z9 1646 aa52.51■■■■■ 6
CHPT1-205ENST00000549872 ZCCHC6Q5VYS8 1495 aaKnown RBP50.64■■■■■ 5.7
CHPT1-205ENST00000549872 DCAF8L2P0C7V8 631 aa49.94■■■■■ 5.59
CHPT1-205ENST00000549872 ABCC9O60706 1549 aa49.77■■■■■ 5.56
CHPT1-205ENST00000549872 DCAF1Q9Y4B6 1507 aa49.76■■■■■ 5.56
CHPT1-205ENST00000549872 SHROOM4Q9ULL8 1493 aa49.37■■■■■ 5.49
CHPT1-205ENST00000549872 MYO15BQ96JP2 1530 aa49.13■■■■■ 5.46
CHPT1-205ENST00000549872 NACADO15069 1562 aa48.9■■■■■ 5.42
CHPT1-205ENST00000549872 RB1CC1Q8TDY2 1594 aa48.5■■■■■ 5.35
CHPT1-205ENST00000549872 SCRIBQ14160 1630 aa48.43■■■■■ 5.34
CHPT1-205ENST00000549872 UNC13AQ9UPW8 1703 aa47.63■■■■■ 5.22
CHPT1-205ENST00000549872 SUPT5HO00267 1087 aaKnown RBP47.5■■■■■ 5.19
CHPT1-205ENST00000549872 BICRAQ9NZM4 1560 aa47.1■■■■■ 5.13
CHPT1-205ENST00000549872 PABPN1Q86U42 306 aaKnown RBP eCLIP46.98■■■■■ 5.11
CHPT1-205ENST00000549872 CECR2Q9BXF3 1484 aa46.93■■■■■ 5.1
CHPT1-205ENST00000549872 RSF1Q96T23 1441 aaPredicted RBP46.81■■■■■ 5.08
CHPT1-205ENST00000549872 MROH2BQ7Z745 1585 aa46.64■■■■■ 5.06
CHPT1-205ENST00000549872 BAZ1AQ9NRL2 1556 aaPredicted RBP46.53■■■■■ 5.04
CHPT1-205ENST00000549872 SMARCA4P51532 1647 aa46.36■■■■■ 5.01
CHPT1-205ENST00000549872 WIZO95785 1651 aa46.29■■■■■ 5
CHPT1-205ENST00000549872 PEG3Q9GZU2 1588 aa45.73■■■■■ 4.91
CHPT1-205ENST00000549872 TOP2AP11388 1531 aaKnown RBP45.72■■■■■ 4.91
CHPT1-205ENST00000549872 EIF4G1Q04637 1599 aaKnown RBP45.66■■■■■ 4.9
CHPT1-205ENST00000549872 ATAD2BQ9ULI0 1458 aa45.58■■■■■ 4.89
CHPT1-205ENST00000549872 SMARCA2P51531 1590 aa45.52■■■■■ 4.88
CHPT1-205ENST00000549872 CHIC1Q5VXU3 224 aa45.42■■■■■ 4.86
CHPT1-205ENST00000549872 BAZ1BQ9UIG0 1483 aaKnown RBP45.33■■■■■ 4.85
CHPT1-205ENST00000549872 CCDC88BA6NC98 1476 aa45.3■■■■■ 4.84
CHPT1-205ENST00000549872 NCAPD3P42695 1498 aa45.14■■■■■ 4.82
CHPT1-205ENST00000549872 HMGXB3Q12766 1538 aa45.07■■■■■ 4.81
CHPT1-205ENST00000549872 CC2D2AQ9P2K1 1620 aa45.01■■■■■ 4.8
CHPT1-205ENST00000549872 TRIM41Q8WV44 630 aa44.59■■■■■ 4.73
CHPT1-205ENST00000549872 ABCC8Q09428 1581 aa44.42■■■■■ 4.7
CHPT1-205ENST00000549872 CFTRP13569 1480 aa44.17■■■■■ 4.66
CHPT1-205ENST00000549872 WRNQ14191 1432 aaPredicted RBP eCLIP44.05■■■■■ 4.641e-7■■■■■ 66.8
CHPT1-205ENST00000549872 CADPSQ9ULU8 1353 aa44.02■■■■■ 4.64
CHPT1-205ENST00000549872 DNAJC5BQ9UF47 199 aa43.98■■■■■ 4.63
CHPT1-205ENST00000549872 PRDM2Q13029 1718 aa43.96■■■■■ 4.63
CHPT1-205ENST00000549872 SYNJ1O43426 1573 aa43.92■■■■■ 4.62
CHPT1-205ENST00000549872 FAM9AQ8IZU1 332 aaPredicted RBP43.87■■■■■ 4.61
CHPT1-205ENST00000549872 LOC105371045A0A1W2PR82 267 aa43.77■■■■■ 4.6
CHPT1-205ENST00000549872 NESP48681 1621 aa43.73■■■■■ 4.59
CHPT1-205ENST00000549872 TOP2BQ02880 1626 aa43.68■■■■■ 4.58
CHPT1-205ENST00000549872 BIVM-ERCC5R4GMW8 1640 aa43.63■■■■■ 4.58
CHPT1-205ENST00000549872 LAMC3Q9Y6N6 1575 aa43.61■■■■■ 4.57
CHPT1-205ENST00000549872 CUX1P39880 1505 aa43.6■■■■■ 4.57
CHPT1-205ENST00000549872 SOGA1O94964 1423 aa43.58■■■■■ 4.57
CHPT1-205ENST00000549872 FANCD2Q9BXW9 1451 aa43.56■■■■■ 4.56
CHPT1-205ENST00000549872 RUSC2Q8N2Y8 1516 aa43.44■■■■■ 4.55
CHPT1-205ENST00000549872 EEA1Q15075 1411 aa43.35■■■■■ 4.53
CHPT1-205ENST00000549872 EHMT2Q96KQ7 1210 aa43.34■■■■■ 4.53
CHPT1-205ENST00000549872 PDS5BQ9NTI5 1447 aa43.27■■■■■ 4.52
CHPT1-205ENST00000549872 CEP164Q9UPV0 1460 aa43.26■■■■■ 4.52
CHPT1-205ENST00000549872 CSRNP3Q8WYN3 585 aa43.21■■■■■ 4.51
CHPT1-205ENST00000549872 KIF21AQ7Z4S6 1674 aa43.18■■■■■ 4.5
CHPT1-205ENST00000549872 DNMBPQ6XZF7 1577 aa43.15■■■■■ 4.5
CHPT1-205ENST00000549872 FGD5Q6ZNL6 1462 aa43.11■■■■■ 4.49
CHPT1-205ENST00000549872 TOPBP1Q92547 1522 aa43.1■■■■■ 4.49
CHPT1-205ENST00000549872 URB2Q14146 1524 aaKnown RBP43.03■■■■■ 4.48
CHPT1-205ENST00000549872 KIF27Q86VH2 1401 aa42.91■■■■■ 4.46
CHPT1-205ENST00000549872 POLA1P09884 1462 aaPredicted RBP42.89■■■■■ 4.46
CHPT1-205ENST00000549872 KIF21BO75037 1637 aa42.85■■■■■ 4.45
CHPT1-205ENST00000549872 CUX2O14529 1486 aa42.84■■■■■ 4.45
CHPT1-205ENST00000549872 GOLGA3Q08378 1498 aa42.82■■■■■ 4.45
CHPT1-205ENST00000549872 RAD54L2Q9Y4B4 1467 aa42.81■■■■■ 4.44
CHPT1-205ENST00000549872 MRC2Q9UBG0 1479 aa42.73■■■■■ 4.43
CHPT1-205ENST00000549872 UBTFP17480 764 aaKnown RBP42.7■■■■■ 4.43
CHPT1-205ENST00000549872 TNIKQ9UKE5 1360 aa42.68■■■■■ 4.42
CHPT1-205ENST00000549872 ABCA10Q8WWZ4 1543 aa42.68■■■■■ 4.42
CHPT1-205ENST00000549872 RAPGEF2Q9Y4G8 1499 aa42.67■■■■■ 4.42
CHPT1-205ENST00000549872 PRXQ9BXM0 1461 aa42.64■■■■■ 4.42
CHPT1-205ENST00000549872 ERCC6Q03468 1493 aa42.63■■■■■ 4.41
CHPT1-205ENST00000549872 WDR97A6NE52 1622 aa42.57■■■■■ 4.41
CHPT1-205ENST00000549872 IGF1RP08069 1367 aa42.56■■■■■ 4.4
CHPT1-205ENST00000549872 ERICH3Q5RHP9 1530 aa42.53■■■■■ 4.4
CHPT1-205ENST00000549872 CEP162Q5TB80 1403 aa42.51■■■■■ 4.4
CHPT1-205ENST00000549872 WDR62O43379 1518 aa42.5■■■■■ 4.39
CHPT1-205ENST00000549872 TARBP1Q13395 1621 aaKnown RBP42.45■■■■■ 4.39
CHPT1-205ENST00000549872 THOC2Q8NI27 1593 aaKnown RBP42.4■■■■■ 4.38
CHPT1-205ENST00000549872 TDRD9Q8NDG6 1382 aaKnown RBP42.38■■■■■ 4.38
CHPT1-205ENST00000549872 ABCA5Q8WWZ7 1642 aa42.36■■■■■ 4.37
CHPT1-205ENST00000549872 CARMIL1Q5VZK9 1371 aa42.34■■■■■ 4.37
CHPT1-205ENST00000549872 GAPVD1Q14C86 1478 aa42.27■■■■■ 4.36
CHPT1-205ENST00000549872 IFT140Q96RY7 1462 aa42.2■■■■■ 4.35
CHPT1-205ENST00000549872 CUL7Q14999 1698 aa42.19■■■■■ 4.34
CHPT1-205ENST00000549872 CLIP1P30622 1438 aa42.17■■■■■ 4.34
CHPT1-205ENST00000549872 RANGAP1P46060 587 aaPredicted RBP42.12■■■■■ 4.33
CHPT1-205ENST00000549872 AQRO60306 1485 aaKnown RBP eCLIP42.11■■■■■ 4.331e-7■■■■■ 30.5
CHPT1-205ENST00000549872 ZNF608Q9ULD9 1512 aaPredicted RBP42.07■■■■■ 4.33
CHPT1-205ENST00000549872 PBRM1Q86U86 1689 aa42.06■■■■■ 4.32
CHPT1-205ENST00000549872 GRIN2BQ13224 1484 aa41.91■■■■■ 4.3
CHPT1-205ENST00000549872 EIF4G3O43432 1585 aaKnown RBP41.9■■■■■ 4.3
CHPT1-205ENST00000549872 ADAMTS12P58397 1594 aa41.81■■■■■ 4.28
CHPT1-205ENST00000549872 FHAD1B1AJZ9 1412 aa41.79■■■■■ 4.28
CHPT1-205ENST00000549872 PPARGC1BQ86YN6 1023 aaKnown RBP41.78■■■■■ 4.28
CHPT1-205ENST00000549872 VPS8Q8N3P4 1428 aa41.78■■■■■ 4.28
CHPT1-205ENST00000549872 CTTNBP2Q8WZ74 1663 aa41.78■■■■■ 4.28
CHPT1-205ENST00000549872 ARAP1Q96P48 1450 aa41.77■■■■■ 4.28
CHPT1-205ENST00000549872 PCGF6Q9BYE7 350 aa41.76■■■■■ 4.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms