RNA–Protein interactions for RNA: ENST00000470661.1

PTP4A1-202, Transcript of protein tyrosine phosphatase type IVA, member 1, humanhuman

TSL 2

Gene PTP4A1, Length 479 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1-202ENST00000470661 AEBP2Q6ZN18 517 aaPredicted RBP29.76■■■□□ 2.35
PTP4A1-202ENST00000470661 CHIC1Q5VXU3 224 aa28.93■■■□□ 2.22
PTP4A1-202ENST00000470661 PHF23Q9BUL5 403 aaPredicted RBP25.48■■□□□ 1.67
PTP4A1-202ENST00000470661 SENP3Q9H4L4 574 aaPredicted RBP25.19■■□□□ 1.62
PTP4A1-202ENST00000470661 FOXD1Q16676 465 aa23.44■■□□□ 1.34
PTP4A1-202ENST00000470661 PLPPR3Q6T4P5 718 aa23.44■■□□□ 1.34
PTP4A1-202ENST00000470661 PPP6R1Q9UPN7 881 aa22.52■■□□□ 1.2
PTP4A1-202ENST00000470661 ADRA2BP18089 450 aa22.51■■□□□ 1.19
PTP4A1-202ENST00000470661 PIAS4Q8N2W9 510 aaPredicted RBP22.09■■□□□ 1.13
PTP4A1-202ENST00000470661 MSH5O43196 834 aa21.58■■□□□ 1.05
PTP4A1-202ENST00000470661 PPP4R3CPQ6ZMV5 832 aa20.68■□□□□ 0.9
PTP4A1-202ENST00000470661 SCAF1Q9H7N4 1312 aaKnown RBP20.49■□□□□ 0.87
PTP4A1-202ENST00000470661 MAPK8IP2Q13387 824 aaPredicted RBP20.46■□□□□ 0.87
PTP4A1-202ENST00000470661 KCNA4P22459 653 aa20.16■□□□□ 0.82
PTP4A1-202ENST00000470661 DMRT2Q9Y5R5 561 aa20.11■□□□□ 0.81
PTP4A1-202ENST00000470661 CNKSR2Q8WXI2 1034 aa20.08■□□□□ 0.81
PTP4A1-202ENST00000470661 NCBP3Q53F19 620 aaKnown RBP20.07■□□□□ 0.8
PTP4A1-202ENST00000470661 NPM3O75607 178 aaKnown RBP19.84■□□□□ 0.77
PTP4A1-202ENST00000470661 POTEDQ86YR6 584 aa19.84■□□□□ 0.77
PTP4A1-202ENST00000470661 RNF216Q9NWF9 866 aaPredicted RBP19.7■□□□□ 0.74
PTP4A1-202ENST00000470661 HOXD11P31277 338 aaPredicted RBP19.64■□□□□ 0.73
PTP4A1-202ENST00000470661 DCAF8L1A6NGE4 600 aa19.32■□□□□ 0.68
PTP4A1-202ENST00000470661 SLC4A1APQ9BWU0 796 aaKnown RBP19.16■□□□□ 0.66
PTP4A1-202ENST00000470661 DNAJC5BQ9UF47 199 aa19.15■□□□□ 0.66
PTP4A1-202ENST00000470661 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.77■□□□□ 0.62e-8■■■□□ 15.1
PTP4A1-202ENST00000470661 SLC4A2P04920 1241 aa18.76■□□□□ 0.59
PTP4A1-202ENST00000470661 EHMT2Q96KQ7 1210 aa18.6■□□□□ 0.57
PTP4A1-202ENST00000470661 ZBTB22O15209 634 aa18.58■□□□□ 0.56
PTP4A1-202ENST00000470661 RNF39Q9H2S5 420 aa18.52■□□□□ 0.56
PTP4A1-202ENST00000470661 FOXD4L1Q9NU39 408 aa18.52■□□□□ 0.56
PTP4A1-202ENST00000470661 U3KPZ7 1027 aaPredicted RBP18.46■□□□□ 0.55
PTP4A1-202ENST00000470661 CSRNP3Q8WYN3 585 aa18.35■□□□□ 0.53
PTP4A1-202ENST00000470661 MYCNP04198 464 aaPredicted RBP18.3■□□□□ 0.52
PTP4A1-202ENST00000470661 C1QBPQ07021 282 aaKnown RBP18.25■□□□□ 0.51
PTP4A1-202ENST00000470661 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.11■□□□□ 0.49
PTP4A1-202ENST00000470661 CACNB1Q02641 598 aaPredicted RBP18.11■□□□□ 0.49
PTP4A1-202ENST00000470661 HNRNPUL2Q1KMD3 747 aaKnown RBP18.11■□□□□ 0.49
PTP4A1-202ENST00000470661 SAMD1Q6SPF0 538 aaPredicted RBP18.08■□□□□ 0.48
PTP4A1-202ENST00000470661 SPINK5Q9NQ38 1064 aaPredicted RBP18■□□□□ 0.47
PTP4A1-202ENST00000470661 APLP2Q06481 763 aa17.94■□□□□ 0.46
PTP4A1-202ENST00000470661 CAPN15O75808 1086 aa17.92■□□□□ 0.46
PTP4A1-202ENST00000470661 ATF5Q9Y2D1 282 aaPredicted RBP17.89■□□□□ 0.45
PTP4A1-202ENST00000470661 ATXN8OSP0DMR3 200 aa17.83■□□□□ 0.44
PTP4A1-202ENST00000470661 TRHP20396 242 aaPredicted RBP17.82■□□□□ 0.44
PTP4A1-202ENST00000470661 ZNF219Q9P2Y4 722 aaPredicted RBP17.75■□□□□ 0.43
PTP4A1-202ENST00000470661 ABCB7O75027 752 aa17.61■□□□□ 0.41
PTP4A1-202ENST00000470661 DSG3P32926 999 aa17.6■□□□□ 0.41
PTP4A1-202ENST00000470661 POLA2Q14181 598 aa17.49■□□□□ 0.39
PTP4A1-202ENST00000470661 ZBTB12Q9Y330 459 aaPredicted RBP17.14■□□□□ 0.33
PTP4A1-202ENST00000470661 MKRN4PQ13434 485 aaPredicted RBP17.09■□□□□ 0.33
PTP4A1-202ENST00000470661 FBLN2P98095 1184 aa17.07■□□□□ 0.32
PTP4A1-202ENST00000470661 OSCARQ8IYS5 282 aa16.93■□□□□ 0.3
PTP4A1-202ENST00000470661 RBM42Q9BTD8 480 aaKnown RBP16.72■□□□□ 0.27
PTP4A1-202ENST00000470661 SPDYE2BA6NHP3 402 aa16.68■□□□□ 0.26
PTP4A1-202ENST00000470661 SPDYE6P0CI01 402 aa16.68■□□□□ 0.26
PTP4A1-202ENST00000470661 SPDYE2Q495Y8 402 aa16.68■□□□□ 0.26
PTP4A1-202ENST00000470661 SPDYE4A6NLX3 237 aa16.65■□□□□ 0.26
PTP4A1-202ENST00000470661 ZNF692Q9BU19 519 aaPredicted RBP16.64■□□□□ 0.25
PTP4A1-202ENST00000470661 FKBP8Q14318 412 aa16.62■□□□□ 0.25
PTP4A1-202ENST00000470661 SSUH2Q9Y2M2 353 aa16.56■□□□□ 0.24
PTP4A1-202ENST00000470661 AKT1S1Q96B36 256 aa16.52■□□□□ 0.24
PTP4A1-202ENST00000470661 PABPN1Q86U42 306 aaKnown RBP eCLIP16.44■□□□□ 0.22
PTP4A1-202ENST00000470661 REM2Q8IYK8 340 aaPredicted RBP16.4■□□□□ 0.22
PTP4A1-202ENST00000470661 PROM2Q8N271 834 aa16.32■□□□□ 0.2
PTP4A1-202ENST00000470661 PITPNM1O00562 1244 aa16.24■□□□□ 0.19
PTP4A1-202ENST00000470661 SPDYE1Q8NFV5 336 aaPredicted RBP16.21■□□□□ 0.19
PTP4A1-202ENST00000470661 CLEC11AQ9Y240 323 aa16.2■□□□□ 0.18
PTP4A1-202ENST00000470661 NISCHQ9Y2I1 1504 aa16.18■□□□□ 0.18
PTP4A1-202ENST00000470661 CHRDL2Q6WN34 429 aa16.12■□□□□ 0.17
PTP4A1-202ENST00000470661 STAG3Q9UJ98 1225 aa16.07■□□□□ 0.16
PTP4A1-202ENST00000470661 PRR29P0C7W0 189 aa16.01■□□□□ 0.15
PTP4A1-202ENST00000470661 FBXO3Q9UK99 471 aa15.97■□□□□ 0.15
PTP4A1-202ENST00000470661 PIP4P2Q8N4L2 257 aa15.91■□□□□ 0.14
PTP4A1-202ENST00000470661 FXR2P51116 673 aaKnown RBP eCLIP15.9■□□□□ 0.14
PTP4A1-202ENST00000470661 CHADLQ6NUI6 762 aa15.84■□□□□ 0.13
PTP4A1-202ENST00000470661 PRKAR2AP13861 404 aaKnown RBP15.82■□□□□ 0.12
PTP4A1-202ENST00000470661 VASPP50552 380 aaPredicted RBP15.81■□□□□ 0.12
PTP4A1-202ENST00000470661 CREBZFQ9NS37 354 aa15.81■□□□□ 0.12
PTP4A1-202ENST00000470661 MIER1Q8N108 512 aa15.8■□□□□ 0.12
PTP4A1-202ENST00000470661 PLCD3Q8N3E9 789 aa15.77■□□□□ 0.12
PTP4A1-202ENST00000470661 POTEHQ6S545 545 aa15.69■□□□□ 0.1
PTP4A1-202ENST00000470661 PLEKHG5O94827 1062 aa15.66■□□□□ 0.1
PTP4A1-202ENST00000470661 FARP1Q9Y4F1 1045 aaPredicted RBP15.64■□□□□ 0.09
PTP4A1-202ENST00000470661 MNX1P50219 401 aaPredicted RBP15.63■□□□□ 0.09
PTP4A1-202ENST00000470661 IFNLR1Q8IU57 520 aaPredicted RBP15.6■□□□□ 0.09
PTP4A1-202ENST00000470661 KLHL34Q8N239 644 aa15.57■□□□□ 0.08
PTP4A1-202ENST00000470661 ZBTB47Q9UFB7 747 aaPredicted RBP15.53■□□□□ 0.08
PTP4A1-202ENST00000470661 NPM1P06748 294 aaKnown RBP eCLIP15.5■□□□□ 0.07
PTP4A1-202ENST00000470661 HAX1O00165 279 aa15.42■□□□□ 0.06
PTP4A1-202ENST00000470661 NUBP1P53384 320 aa15.4■□□□□ 0.06
PTP4A1-202ENST00000470661 SPOCK2Q92563 424 aa15.4■□□□□ 0.06
PTP4A1-202ENST00000470661 RASEFQ8IZ41 740 aa15.38■□□□□ 0.05
PTP4A1-202ENST00000470661 C19orf67A6NJJ6 358 aa15.37■□□□□ 0.05
PTP4A1-202ENST00000470661 CD44P16070 742 aaKnown RBP15.37■□□□□ 0.05
PTP4A1-202ENST00000470661 EVX2Q03828 476 aa15.32■□□□□ 0.04
PTP4A1-202ENST00000470661 TSPYL2Q9H2G4 693 aaPredicted RBP15.32■□□□□ 0.04
PTP4A1-202ENST00000470661 ZRANB1Q9UGI0 708 aa15.27■□□□□ 0.04
PTP4A1-202ENST00000470661 PAK3O75914 559 aaPredicted RBP15.26■□□□□ 0.03
PTP4A1-202ENST00000470661 FAM212AQ96EL1 285 aa15.26■□□□□ 0.03
PTP4A1-202ENST00000470661 DCAF8Q5TAQ9 597 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms