RNA–Protein interactions for RNA: ENST00000360212.6

CD46-206, Transcript of CD46 molecule, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD46, Length 3,081 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-206ENST00000360212 NISCHQ9Y2I1 1504 aa15.29■□□□□ 0.04
CD46-206ENST00000360212 PPARGC1BQ86YN6 1023 aaKnown RBP14.67□□□□□ -0.06
CD46-206ENST00000360212 PELP1Q8IZL8 1130 aaKnown RBP14.65□□□□□ -0.06
CD46-206ENST00000360212 HRCP23327 699 aa14.64□□□□□ -0.07
CD46-206ENST00000360212 PCGF6Q9BYE7 350 aa14.52□□□□□ -0.08
CD46-206ENST00000360212 SUPT5HO00267 1087 aaKnown RBP14.41□□□□□ -0.1
CD46-206ENST00000360212 SHROOM4Q9ULL8 1493 aa14.38□□□□□ -0.11
CD46-206ENST00000360212 MYT1Q01538 1121 aa14.25□□□□□ -0.13
CD46-206ENST00000360212 SCAF1Q9H7N4 1312 aaKnown RBP14.09□□□□□ -0.15
CD46-206ENST00000360212 MYO15BQ96JP2 1530 aa14.07□□□□□ -0.16
CD46-206ENST00000360212 CHIC1Q5VXU3 224 aa13.96□□□□□ -0.18
CD46-206ENST00000360212 LOC105371045A0A1W2PR82 267 aa13.92□□□□□ -0.18
CD46-206ENST00000360212 TRIM26Q12899 539 aaPredicted RBP13.72□□□□□ -0.21
CD46-206ENST00000360212 NEUROD1Q13562 356 aa13.67□□□□□ -0.22
CD46-206ENST00000360212 GTF3C3Q9Y5Q9 886 aa13.64□□□□□ -0.23
CD46-206ENST00000360212 EHMT2Q96KQ7 1210 aa13.63□□□□□ -0.23
CD46-206ENST00000360212 ACIN1Q9UKV3 1341 aaKnown RBP13.59□□□□□ -0.23
CD46-206ENST00000360212 ZEB1P37275 1124 aaPredicted RBP13.54□□□□□ -0.24
CD46-206ENST00000360212 DCAF1Q9Y4B6 1507 aa13.53□□□□□ -0.24
CD46-206ENST00000360212 DCAF8L2P0C7V8 631 aa13.53□□□□□ -0.24
CD46-206ENST00000360212 TTBK1Q5TCY1 1321 aaPredicted RBP13.51□□□□□ -0.25
CD46-206ENST00000360212 FAM9AQ8IZU1 332 aaPredicted RBP13.44□□□□□ -0.26
CD46-206ENST00000360212 YTHDC1Q96MU7 727 aaKnown RBP13.43□□□□□ -0.26
CD46-206ENST00000360212 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.4□□□□□ -0.26
CD46-206ENST00000360212 CENPBP07199 599 aaPredicted RBP13.38□□□□□ -0.27
CD46-206ENST00000360212 CCDC180Q9P1Z9 1646 aa13.36□□□□□ -0.27
CD46-206ENST00000360212 BCL11AQ9H165 835 aa13.36□□□□□ -0.27
CD46-206ENST00000360212 DIEXFQ68CQ4 756 aaKnown RBP13.33□□□□□ -0.27
CD46-206ENST00000360212 PRKCSHP14314 528 aaPredicted RBP13.31□□□□□ -0.28
CD46-206ENST00000360212 CCER1Q8TC90 406 aaPredicted RBP13.31□□□□□ -0.28
CD46-206ENST00000360212 TRIM41Q8WV44 630 aa13.12□□□□□ -0.31
CD46-206ENST00000360212 MIER1Q8N108 512 aa13.02□□□□□ -0.32
CD46-206ENST00000360212 ZCCHC6Q5VYS8 1495 aaKnown RBP12.99□□□□□ -0.33
CD46-206ENST00000360212 ERICH6Q7L0X2 663 aa12.94□□□□□ -0.34
CD46-206ENST00000360212 ZNF316A6NFI3 1004 aaPredicted RBP12.94□□□□□ -0.34
CD46-206ENST00000360212 CSRNP3Q8WYN3 585 aa12.91□□□□□ -0.34
CD46-206ENST00000360212 ANP32EQ9BTT0 268 aa12.9□□□□□ -0.34
CD46-206ENST00000360212 BCANQ96GW7 911 aa12.84□□□□□ -0.35
CD46-206ENST00000360212 TSHZ2Q9NRE2 1034 aa12.83□□□□□ -0.36
CD46-206ENST00000360212 SUPT16HQ9Y5B9 1047 aaKnown RBP12.83□□□□□ -0.36
CD46-206ENST00000360212 APLP2Q06481 763 aa12.79□□□□□ -0.36
CD46-206ENST00000360212 HNRNPUL2Q1KMD3 747 aaKnown RBP12.75□□□□□ -0.37
CD46-206ENST00000360212 ITGAEP38570 1179 aa12.6□□□□□ -0.39
CD46-206ENST00000360212 KCNH8Q96L42 1107 aa12.59□□□□□ -0.39
CD46-206ENST00000360212 FKBP8Q14318 412 aa12.57□□□□□ -0.4
CD46-206ENST00000360212 RANGAP1P46060 587 aaPredicted RBP12.53□□□□□ -0.4
CD46-206ENST00000360212 RSF1Q96T23 1441 aaPredicted RBP12.53□□□□□ -0.4
CD46-206ENST00000360212 RB1CC1Q8TDY2 1594 aa12.53□□□□□ -0.4
CD46-206ENST00000360212 RBM19Q9Y4C8 960 aaKnown RBP12.53□□□□□ -0.4
CD46-206ENST00000360212 UBTFP17480 764 aaKnown RBP12.52□□□□□ -0.4
CD46-206ENST00000360212 ANO8Q9HCE9 1232 aaPredicted RBP12.51□□□□□ -0.41
CD46-206ENST00000360212 MSH5O43196 834 aa12.45□□□□□ -0.42
CD46-206ENST00000360212 CEP162Q5TB80 1403 aa12.41□□□□□ -0.42
CD46-206ENST00000360212 CLSPNQ9HAW4 1339 aa12.41□□□□□ -0.42
CD46-206ENST00000360212 TRIM52Q96A61 297 aa12.39□□□□□ -0.43
CD46-206ENST00000360212 NEFLP07196 543 aa12.37□□□□□ -0.43
CD46-206ENST00000360212 IRX6P78412 446 aaPredicted RBP12.36□□□□□ -0.43
CD46-206ENST00000360212 ABCC9O60706 1549 aa12.35□□□□□ -0.43
CD46-206ENST00000360212 CCDC136Q96JN2 1154 aa12.31□□□□□ -0.44
CD46-206ENST00000360212 DEKP35659 375 aaKnown RBP12.3□□□□□ -0.44
CD46-206ENST00000360212 HIRIP3Q9BW71 556 aaPredicted RBP12.3□□□□□ -0.44
CD46-206ENST00000360212 DDX10Q13206 875 aaKnown RBP12.3□□□□□ -0.44
CD46-206ENST00000360212 NBR1Q14596 966 aa12.3□□□□□ -0.44
CD46-206ENST00000360212 WRNQ14191 1432 aaPredicted RBP eCLIP12.28□□□□□ -0.44
CD46-206ENST00000360212 SCRIBQ14160 1630 aa12.27□□□□□ -0.44
CD46-206ENST00000360212 SALL2Q9Y467 1007 aaPredicted RBP12.27□□□□□ -0.44
CD46-206ENST00000360212 SOGA1O94964 1423 aa12.27□□□□□ -0.45
CD46-206ENST00000360212 RTN4Q9NQC3 1192 aaKnown RBP12.24□□□□□ -0.45
CD46-206ENST00000360212 CCDC88BA6NC98 1476 aa12.23□□□□□ -0.45
CD46-206ENST00000360212 UBE2Q2Q8WVN8 375 aa12.22□□□□□ -0.45
CD46-206ENST00000360212 ABCC8Q09428 1581 aa12.22□□□□□ -0.45
CD46-206ENST00000360212 CECR2Q9BXF3 1484 aa12.2□□□□□ -0.46
CD46-206ENST00000360212 RUSC2Q8N2Y8 1516 aa12.2□□□□□ -0.46
CD46-206ENST00000360212 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.19□□□□□ -0.46
CD46-206ENST00000360212 TNIKQ9UKE5 1360 aa12.19□□□□□ -0.46
CD46-206ENST00000360212 CDK11AQ9UQ88 783 aaPredicted RBP12.19□□□□□ -0.46
CD46-206ENST00000360212 EIF5BO60841 1220 aaKnown RBP12.17□□□□□ -0.46
CD46-206ENST00000360212 DHX57Q6P158 1386 aaKnown RBP12.16□□□□□ -0.46
CD46-206ENST00000360212 SLC24A1O60721 1099 aa12.14□□□□□ -0.47
CD46-206ENST00000360212 IL27Q8NEV9 243 aa12.11□□□□□ -0.47
CD46-206ENST00000360212 MROH2BQ7Z745 1585 aa12.11□□□□□ -0.47
CD46-206ENST00000360212 FANCIQ9NVI1 1328 aa12.1□□□□□ -0.47
CD46-206ENST00000360212 PAK3O75914 559 aaPredicted RBP12.09□□□□□ -0.47
CD46-206ENST00000360212 HNRNPUQ00839 825 aaKnown RBP eCLIP12.07□□□□□ -0.48
CD46-206ENST00000360212 B4GALNT3Q6L9W6 998 aa12.07□□□□□ -0.48
CD46-206ENST00000360212 WIZO95785 1651 aa12.07□□□□□ -0.48
CD46-206ENST00000360212 SIN3AQ96ST3 1273 aa12.07□□□□□ -0.48
CD46-206ENST00000360212 MYT1LQ9UL68 1186 aa12.06□□□□□ -0.48
CD46-206ENST00000360212 ANP32CO43423 234 aa12.05□□□□□ -0.48
CD46-206ENST00000360212 CLIP1P30622 1438 aa12.05□□□□□ -0.48
CD46-206ENST00000360212 KANK4Q5T7N3 995 aaPredicted RBP12.04□□□□□ -0.48
CD46-206ENST00000360212 ERICH6BQ5W0A0 696 aa12.03□□□□□ -0.48
CD46-206ENST00000360212 NOP58Q9Y2X3 529 aaKnown RBP12.01□□□□□ -0.49
CD46-206ENST00000360212 PLEKHG5O94827 1062 aa12.01□□□□□ -0.49
CD46-206ENST00000360212 SENP3-EIF4A1A0A087X0R7 540 aa12□□□□□ -0.49
CD46-206ENST00000360212 GOLGA3Q08378 1498 aa12□□□□□ -0.49
CD46-206ENST00000360212 PKNOX2Q96KN3 472 aa12□□□□□ -0.49
CD46-206ENST00000360212 RTL5Q5HYW3 569 aaPredicted RBP11.99□□□□□ -0.49
CD46-206ENST00000360212 CNGB1Q14028 1251 aaPredicted RBP11.98□□□□□ -0.49
CD46-206ENST00000360212 BAZ1BQ9UIG0 1483 aaKnown RBP11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms