RNA–Protein interactions for RNA: ENST00000354848.5

CD46-203, Transcript of CD46 molecule, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD46, Length 3,233 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-203ENST00000354848 NISCHQ9Y2I1 1504 aa14.47□□□□□ -0.09
CD46-203ENST00000354848 HRCP23327 699 aa13.41□□□□□ -0.26
CD46-203ENST00000354848 PELP1Q8IZL8 1130 aaKnown RBP13.17□□□□□ -0.3
CD46-203ENST00000354848 PPARGC1BQ86YN6 1023 aaKnown RBP13.1□□□□□ -0.31
CD46-203ENST00000354848 PCGF6Q9BYE7 350 aa13.03□□□□□ -0.32
CD46-203ENST00000354848 MYO15BQ96JP2 1530 aa12.94□□□□□ -0.34
CD46-203ENST00000354848 SUPT5HO00267 1087 aaKnown RBP12.9□□□□□ -0.34
CD46-203ENST00000354848 SHROOM4Q9ULL8 1493 aa12.89□□□□□ -0.35
CD46-203ENST00000354848 CHIC1Q5VXU3 224 aa12.78□□□□□ -0.36
CD46-203ENST00000354848 SCAF1Q9H7N4 1312 aaKnown RBP12.77□□□□□ -0.37
CD46-203ENST00000354848 DCAF1Q9Y4B6 1507 aa12.72□□□□□ -0.37
CD46-203ENST00000354848 MYT1Q01538 1121 aa12.7□□□□□ -0.38
CD46-203ENST00000354848 CCDC180Q9P1Z9 1646 aa12.62□□□□□ -0.39
CD46-203ENST00000354848 TRIM26Q12899 539 aaPredicted RBP12.59□□□□□ -0.39
CD46-203ENST00000354848 ZEB1P37275 1124 aaPredicted RBP12.54□□□□□ -0.4
CD46-203ENST00000354848 LOC105371045A0A1W2PR82 267 aa12.49□□□□□ -0.41
CD46-203ENST00000354848 ACIN1Q9UKV3 1341 aaKnown RBP12.41□□□□□ -0.42
CD46-203ENST00000354848 NEUROD1Q13562 356 aa12.36□□□□□ -0.43
CD46-203ENST00000354848 ZCCHC6Q5VYS8 1495 aaKnown RBP12.35□□□□□ -0.43
CD46-203ENST00000354848 GTF3C3Q9Y5Q9 886 aa12.31□□□□□ -0.44
CD46-203ENST00000354848 CENPBP07199 599 aaPredicted RBP12.21□□□□□ -0.45
CD46-203ENST00000354848 DIEXFQ68CQ4 756 aaKnown RBP12.1□□□□□ -0.47
CD46-203ENST00000354848 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.02□□□□□ -0.48
CD46-203ENST00000354848 CCER1Q8TC90 406 aaPredicted RBP12□□□□□ -0.49
CD46-203ENST00000354848 TTBK1Q5TCY1 1321 aaPredicted RBP11.96□□□□□ -0.49
CD46-203ENST00000354848 DCAF8L2P0C7V8 631 aa11.95□□□□□ -0.5
CD46-203ENST00000354848 TRIM41Q8WV44 630 aa11.93□□□□□ -0.5
CD46-203ENST00000354848 FAM9AQ8IZU1 332 aaPredicted RBP11.92□□□□□ -0.5
CD46-203ENST00000354848 YTHDC1Q96MU7 727 aaKnown RBP11.9□□□□□ -0.51
CD46-203ENST00000354848 BCL11AQ9H165 835 aa11.86□□□□□ -0.51
CD46-203ENST00000354848 EHMT2Q96KQ7 1210 aa11.86□□□□□ -0.51
CD46-203ENST00000354848 ZNF316A6NFI3 1004 aaPredicted RBP11.83□□□□□ -0.52
CD46-203ENST00000354848 ABCC9O60706 1549 aa11.78□□□□□ -0.52
CD46-203ENST00000354848 ANP32EQ9BTT0 268 aa11.78□□□□□ -0.52
CD46-203ENST00000354848 MIER1Q8N108 512 aa11.78□□□□□ -0.52
CD46-203ENST00000354848 RB1CC1Q8TDY2 1594 aa11.71□□□□□ -0.53
CD46-203ENST00000354848 RSF1Q96T23 1441 aaPredicted RBP11.7□□□□□ -0.54
CD46-203ENST00000354848 SUPT16HQ9Y5B9 1047 aaKnown RBP11.69□□□□□ -0.54
CD46-203ENST00000354848 TSHZ2Q9NRE2 1034 aa11.68□□□□□ -0.54
CD46-203ENST00000354848 CLSPNQ9HAW4 1339 aa11.67□□□□□ -0.54
CD46-203ENST00000354848 CSRNP3Q8WYN3 585 aa11.65□□□□□ -0.54
CD46-203ENST00000354848 WRNQ14191 1432 aaPredicted RBP eCLIP11.61□□□□□ -0.55
CD46-203ENST00000354848 CEP162Q5TB80 1403 aa11.49□□□□□ -0.57
CD46-203ENST00000354848 PRKCSHP14314 528 aaPredicted RBP11.48□□□□□ -0.57
CD46-203ENST00000354848 SCRIBQ14160 1630 aa11.44□□□□□ -0.58
CD46-203ENST00000354848 HNRNPUL2Q1KMD3 747 aaKnown RBP11.41□□□□□ -0.58
CD46-203ENST00000354848 TNIKQ9UKE5 1360 aa11.4□□□□□ -0.58
CD46-203ENST00000354848 RBM19Q9Y4C8 960 aaKnown RBP11.39□□□□□ -0.59
CD46-203ENST00000354848 EIF4G1Q04637 1599 aaKnown RBP11.38□□□□□ -0.59
CD46-203ENST00000354848 BCANQ96GW7 911 aa11.38□□□□□ -0.59
CD46-203ENST00000354848 FKBP8Q14318 412 aa11.33□□□□□ -0.6
CD46-203ENST00000354848 WIZO95785 1651 aa11.32□□□□□ -0.6
CD46-203ENST00000354848 CCDC88BA6NC98 1476 aa11.32□□□□□ -0.6
CD46-203ENST00000354848 ABCC8Q09428 1581 aa11.32□□□□□ -0.6
CD46-203ENST00000354848 MROH2BQ7Z745 1585 aa11.32□□□□□ -0.6
CD46-203ENST00000354848 CECR2Q9BXF3 1484 aa11.31□□□□□ -0.6
CD46-203ENST00000354848 MSH5O43196 834 aa11.31□□□□□ -0.6
CD46-203ENST00000354848 SOGA1O94964 1423 aa11.29□□□□□ -0.6
CD46-203ENST00000354848 KCNH8Q96L42 1107 aa11.29□□□□□ -0.6
CD46-203ENST00000354848 UBTFP17480 764 aaKnown RBP11.28□□□□□ -0.6
CD46-203ENST00000354848 BAZ1AQ9NRL2 1556 aaPredicted RBP11.25□□□□□ -0.61
CD46-203ENST00000354848 DHX57Q6P158 1386 aaKnown RBP11.24□□□□□ -0.61
CD46-203ENST00000354848 GOLGA3Q08378 1498 aa11.23□□□□□ -0.61
CD46-203ENST00000354848 ERICH6Q7L0X2 663 aa11.23□□□□□ -0.61
CD46-203ENST00000354848 EEA1Q15075 1411 aa11.23□□□□□ -0.61
CD46-203ENST00000354848 RUSC2Q8N2Y8 1516 aa11.22□□□□□ -0.61
CD46-203ENST00000354848 ITGAEP38570 1179 aa11.22□□□□□ -0.61
CD46-203ENST00000354848 NEFLP07196 543 aa11.21□□□□□ -0.62
CD46-203ENST00000354848 FANCIQ9NVI1 1328 aa11.2□□□□□ -0.62
CD46-203ENST00000354848 NACADO15069 1562 aa11.18□□□□□ -0.62
CD46-203ENST00000354848 MYT1LQ9UL68 1186 aa11.16□□□□□ -0.62
CD46-203ENST00000354848 VPS8Q8N3P4 1428 aa11.16□□□□□ -0.62
CD46-203ENST00000354848 CLIP1P30622 1438 aa11.16□□□□□ -0.62
CD46-203ENST00000354848 DEKP35659 375 aaKnown RBP11.14□□□□□ -0.63
CD46-203ENST00000354848 APLP2Q06481 763 aa11.14□□□□□ -0.63
CD46-203ENST00000354848 ANO8Q9HCE9 1232 aaPredicted RBP11.11□□□□□ -0.63
CD46-203ENST00000354848 CEP164Q9UPV0 1460 aa11.1□□□□□ -0.63
CD46-203ENST00000354848 KIF21BO75037 1637 aa11.09□□□□□ -0.63
CD46-203ENST00000354848 TRIM52Q96A61 297 aa11.09□□□□□ -0.63
CD46-203ENST00000354848 TOP2AP11388 1531 aaKnown RBP11.08□□□□□ -0.64
CD46-203ENST00000354848 DDX10Q13206 875 aaKnown RBP11.07□□□□□ -0.64
CD46-203ENST00000354848 CDK11AQ9UQ88 783 aaPredicted RBP11.07□□□□□ -0.64
CD46-203ENST00000354848 SMARCA2P51531 1590 aa11.07□□□□□ -0.64
CD46-203ENST00000354848 CCER2I3L3R5 266 aa11.03□□□□□ -0.64
CD46-203ENST00000354848 CUX2O14529 1486 aa11.02□□□□□ -0.64
CD46-203ENST00000354848 PPP1R15AO75807 674 aaPredicted RBP11.01□□□□□ -0.65
CD46-203ENST00000354848 BAZ1BQ9UIG0 1483 aaKnown RBP11.01□□□□□ -0.65
CD46-203ENST00000354848 SALL2Q9Y467 1007 aaPredicted RBP11□□□□□ -0.65
CD46-203ENST00000354848 ERICH6BQ5W0A0 696 aa10.99□□□□□ -0.65
CD46-203ENST00000354848 RRBP1Q9P2E9 1410 aaKnown RBP10.99□□□□□ -0.65
CD46-203ENST00000354848 WDR97A6NE52 1622 aa10.99□□□□□ -0.65
CD46-203ENST00000354848 MAPKBP1O60336 1514 aa10.99□□□□□ -0.65
CD46-203ENST00000354848 IRX6P78412 446 aaPredicted RBP10.98□□□□□ -0.65
CD46-203ENST00000354848 ANP32CO43423 234 aa10.97□□□□□ -0.65
CD46-203ENST00000354848 RANGAP1P46060 587 aaPredicted RBP10.97□□□□□ -0.65
CD46-203ENST00000354848 RAPGEF2Q9Y4G8 1499 aa10.97□□□□□ -0.65
CD46-203ENST00000354848 NBR1Q14596 966 aa10.96□□□□□ -0.65
CD46-203ENST00000354848 KANK4Q5T7N3 995 aaPredicted RBP10.96□□□□□ -0.66
CD46-203ENST00000354848 NOP58Q9Y2X3 529 aaKnown RBP10.94□□□□□ -0.66
CD46-203ENST00000354848 SYNJ1O43426 1573 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms