RNA–Protein interactions for RNA: ENST00000469535.5

CD46-212, Transcript of CD46 molecule, humanhuman

TSL 1 (best)

Gene CD46, Length 7,826 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-212ENST00000469535 DCAF8L2P0C7V8 631 aa12.66□□□□□ -0.38
CD46-212ENST00000469535 SUPT5HO00267 1087 aaKnown RBP11.63□□□□□ -0.55
CD46-212ENST00000469535 EHMT2Q96KQ7 1210 aa11.59□□□□□ -0.55
CD46-212ENST00000469535 NISCHQ9Y2I1 1504 aa11.53□□□□□ -0.56
CD46-212ENST00000469535 SHROOM4Q9ULL8 1493 aa11.45□□□□□ -0.58
CD46-212ENST00000469535 FAM9AQ8IZU1 332 aaPredicted RBP11.27□□□□□ -0.6
CD46-212ENST00000469535 APLP2Q06481 763 aa11.23□□□□□ -0.61
CD46-212ENST00000469535 TTBK1Q5TCY1 1321 aaPredicted RBP11.13□□□□□ -0.63
CD46-212ENST00000469535 RANGAP1P46060 587 aaPredicted RBP11.12□□□□□ -0.63
CD46-212ENST00000469535 ATP1B4Q9UN42 357 aaPredicted RBP11.07□□□□□ -0.64
CD46-212ENST00000469535 PELP1Q8IZL8 1130 aaKnown RBP10.96□□□□□ -0.66
CD46-212ENST00000469535 MYT1LQ9UL68 1186 aa10.83□□□□□ -0.68
CD46-212ENST00000469535 PCGF6Q9BYE7 350 aa10.76□□□□□ -0.69
CD46-212ENST00000469535 UBTFP17480 764 aaKnown RBP10.73□□□□□ -0.69
CD46-212ENST00000469535 TRIM41Q8WV44 630 aa10.7□□□□□ -0.7
CD46-212ENST00000469535 CHIC1Q5VXU3 224 aa10.7□□□□□ -0.7
CD46-212ENST00000469535 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.69□□□□□ -0.7
CD46-212ENST00000469535 HNRNPUL2Q1KMD3 747 aaKnown RBP10.69□□□□□ -0.7
CD46-212ENST00000469535 ERICH6Q7L0X2 663 aa10.63□□□□□ -0.71
CD46-212ENST00000469535 CCER1Q8TC90 406 aaPredicted RBP10.6□□□□□ -0.71
CD46-212ENST00000469535 POLR3GLQ9BT43 218 aa10.55□□□□□ -0.72
CD46-212ENST00000469535 PPARGC1BQ86YN6 1023 aaKnown RBP10.51□□□□□ -0.73
CD46-212ENST00000469535 ITGAEP38570 1179 aa10.5□□□□□ -0.73
CD46-212ENST00000469535 SLC4A1APQ9BWU0 796 aaKnown RBP10.49□□□□□ -0.73
CD46-212ENST00000469535 CNGB1Q14028 1251 aaPredicted RBP10.46□□□□□ -0.74
CD46-212ENST00000469535 YTHDC1Q96MU7 727 aaKnown RBP10.43□□□□□ -0.74
CD46-212ENST00000469535 NEFLP07196 543 aa10.42□□□□□ -0.74
CD46-212ENST00000469535 CENPBP07199 599 aaPredicted RBP10.42□□□□□ -0.74
CD46-212ENST00000469535 ZEB1P37275 1124 aaPredicted RBP10.33□□□□□ -0.76
CD46-212ENST00000469535 FBLN2P98095 1184 aa10.3□□□□□ -0.76
CD46-212ENST00000469535 PABPN1Q86U42 306 aaKnown RBP eCLIP10.28□□□□□ -0.76
CD46-212ENST00000469535 DAXXQ9UER7 740 aaPredicted RBP10.26□□□□□ -0.77
CD46-212ENST00000469535 BCANQ96GW7 911 aa10.23□□□□□ -0.77
CD46-212ENST00000469535 SLC24A1O60721 1099 aa10.2□□□□□ -0.78
CD46-212ENST00000469535 ABCC9O60706 1549 aa10.2□□□□□ -0.78
CD46-212ENST00000469535 PLPPR3Q6T4P5 718 aa10.19□□□□□ -0.78
CD46-212ENST00000469535 FAM50AQ14320 339 aaKnown RBP10.17□□□□□ -0.78
CD46-212ENST00000469535 TRIM52Q96A61 297 aa10.17□□□□□ -0.78
CD46-212ENST00000469535 MYT1Q01538 1121 aa10.12□□□□□ -0.79
CD46-212ENST00000469535 CLSPNQ9HAW4 1339 aa10.11□□□□□ -0.79
CD46-212ENST00000469535 ZNF326Q5BKZ1 582 aaKnown RBP10.1□□□□□ -0.79
CD46-212ENST00000469535 ARID3CA6NKF2 412 aa10.1□□□□□ -0.79
CD46-212ENST00000469535 BCL11AQ9H165 835 aa10.08□□□□□ -0.8
CD46-212ENST00000469535 LOC105371045A0A1W2PR82 267 aa10.06□□□□□ -0.8
CD46-212ENST00000469535 ESF1Q9H501 851 aaKnown RBP10.06□□□□□ -0.8
CD46-212ENST00000469535 TRIM26Q12899 539 aaPredicted RBP10.04□□□□□ -0.8
CD46-212ENST00000469535 NEUROD1Q13562 356 aa10.03□□□□□ -0.8
CD46-212ENST00000469535 ZNF316A6NFI3 1004 aaPredicted RBP10□□□□□ -0.81
CD46-212ENST00000469535 ZBTB47Q9UFB7 747 aaPredicted RBP9.99□□□□□ -0.81
CD46-212ENST00000469535 P3H3Q8IVL6 736 aa9.98□□□□□ -0.81
CD46-212ENST00000469535 ZNF777Q9ULD5 760 aaPredicted RBP9.98□□□□□ -0.81
CD46-212ENST00000469535 STAG3Q9UJ98 1225 aa9.96□□□□□ -0.81
CD46-212ENST00000469535 NEFMP07197 916 aa9.93□□□□□ -0.82
CD46-212ENST00000469535 CHGAP10645 457 aaKnown RBP9.93□□□□□ -0.82
CD46-212ENST00000469535 NPM1P06748 294 aaKnown RBP eCLIP9.92□□□□□ -0.82
CD46-212ENST00000469535 SCAF1Q9H7N4 1312 aaKnown RBP9.9□□□□□ -0.82
CD46-212ENST00000469535 CANXP27824 592 aaKnown RBP9.9□□□□□ -0.82
CD46-212ENST00000469535 A0A0G2JS52 829 aa9.88□□□□□ -0.83
CD46-212ENST00000469535 HRCP23327 699 aa9.86□□□□□ -0.83
CD46-212ENST00000469535 PLEKHG5O94827 1062 aa9.84□□□□□ -0.84
CD46-212ENST00000469535 CCDC180Q9P1Z9 1646 aa9.83□□□□□ -0.84
CD46-212ENST00000469535 RTL5Q5HYW3 569 aaPredicted RBP9.81□□□□□ -0.84
CD46-212ENST00000469535 SENP3Q9H4L4 574 aaPredicted RBP9.8□□□□□ -0.84
CD46-212ENST00000469535 CDK11AQ9UQ88 783 aaPredicted RBP9.78□□□□□ -0.84
CD46-212ENST00000469535 ANP32CO43423 234 aa9.78□□□□□ -0.84
CD46-212ENST00000469535 ZBTB7CA1YPR0 619 aa9.77□□□□□ -0.84
CD46-212ENST00000469535 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.76□□□□□ -0.854e-9■■□□□ 11.7
CD46-212ENST00000469535 DIEXFQ68CQ4 756 aaKnown RBP9.74□□□□□ -0.85
CD46-212ENST00000469535 C14orf37Q86TY3 774 aa9.72□□□□□ -0.85
CD46-212ENST00000469535 ARID4BQ4LE39 1312 aaPredicted RBP9.69□□□□□ -0.86
CD46-212ENST00000469535 HAP1P54257 671 aaPredicted RBP9.68□□□□□ -0.86
CD46-212ENST00000469535 CHMP7Q8WUX9 453 aaPredicted RBP9.67□□□□□ -0.86
CD46-212ENST00000469535 NPM2Q86SE8 214 aaKnown RBP9.65□□□□□ -0.86
CD46-212ENST00000469535 PPP1R15AO75807 674 aaPredicted RBP9.64□□□□□ -0.87
CD46-212ENST00000469535 CHIC2Q9UKJ5 165 aa9.64□□□□□ -0.87
CD46-212ENST00000469535 KCNH8Q96L42 1107 aa9.64□□□□□ -0.87
CD46-212ENST00000469535 TRHP20396 242 aaPredicted RBP9.62□□□□□ -0.87
CD46-212ENST00000469535 SCRIBQ14160 1630 aa9.62□□□□□ -0.87
CD46-212ENST00000469535 SALL2Q9Y467 1007 aaPredicted RBP9.62□□□□□ -0.87
CD46-212ENST00000469535 CSRNP3Q8WYN3 585 aa9.6□□□□□ -0.87
CD46-212ENST00000469535 ARXQ96QS3 562 aa9.6□□□□□ -0.87
CD46-212ENST00000469535 ZCCHC6Q5VYS8 1495 aaKnown RBP9.6□□□□□ -0.87
CD46-212ENST00000469535 KDM2AQ9Y2K7 1162 aa9.6□□□□□ -0.87
CD46-212ENST00000469535 HSP90AA1P07900 732 aaKnown RBP9.57□□□□□ -0.88
CD46-212ENST00000469535 TSPY4P0CV99 314 aa9.57□□□□□ -0.88
CD46-212ENST00000469535 TSPY10P0CW01 314 aa9.57□□□□□ -0.88
CD46-212ENST00000469535 TONSLQ96HA7 1378 aa9.55□□□□□ -0.88
CD46-212ENST00000469535 RB1CC1Q8TDY2 1594 aa9.54□□□□□ -0.88
CD46-212ENST00000469535 LMOD2Q6P5Q4 547 aa9.54□□□□□ -0.88
CD46-212ENST00000469535 FAM9BQ8IZU0 186 aa9.52□□□□□ -0.89
CD46-212ENST00000469535 NPHP1O15259 732 aa9.51□□□□□ -0.89
CD46-212ENST00000469535 NACADO15069 1562 aa9.51□□□□□ -0.89
CD46-212ENST00000469535 WDR43Q15061 677 aaKnown RBP eCLIP9.51□□□□□ -0.89
CD46-212ENST00000469535 TMC1Q8TDI8 760 aa9.49□□□□□ -0.89
CD46-212ENST00000469535 TULP1O00294 542 aaPredicted RBP9.49□□□□□ -0.89
CD46-212ENST00000469535 ERCC6Q03468 1493 aa9.47□□□□□ -0.89
CD46-212ENST00000469535 ANP32AP39687 249 aaKnown RBP9.47□□□□□ -0.89
CD46-212ENST00000469535 CDK11BP21127 795 aaKnown RBP9.46□□□□□ -0.89
CD46-212ENST00000469535 UPF2Q9HAU5 1272 aaKnown RBP9.46□□□□□ -0.89
CD46-212ENST00000469535 MTUS2Q5JR59 1369 aa9.46□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms