RNA–Protein interactions for RNA: ENST00000270142.10

SOD1-201, Transcript of superoxide dismutase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SOD1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOD1-201ENST00000270142 NISCHQ9Y2I1 1504 aa38.3■■■■□ 3.72
SOD1-201ENST00000270142 ABCC9O60706 1549 aa34.32■■■■□ 3.08
SOD1-201ENST00000270142 CCDC180Q9P1Z9 1646 aa34.32■■■■□ 3.08
SOD1-201ENST00000270142 RB1CC1Q8TDY2 1594 aa32.66■■■□□ 2.82
SOD1-201ENST00000270142 NACADO15069 1562 aa32.45■■■□□ 2.78
SOD1-201ENST00000270142 DCAF8L2P0C7V8 631 aa32.29■■■□□ 2.76
SOD1-201ENST00000270142 DNAJC5BQ9UF47 199 aa32.16■■■□□ 2.74
SOD1-201ENST00000270142 MYO15BQ96JP2 1530 aa32.01■■■□□ 2.72
SOD1-201ENST00000270142 PABPN1Q86U42 306 aaKnown RBP eCLIP31.96■■■□□ 2.71
SOD1-201ENST00000270142 UNC13AQ9UPW8 1703 aa31.91■■■□□ 2.7
SOD1-201ENST00000270142 ZCCHC6Q5VYS8 1495 aaKnown RBP31.78■■■□□ 2.68
SOD1-201ENST00000270142 BICRAQ9NZM4 1560 aa31.73■■■□□ 2.67
SOD1-201ENST00000270142 DCAF1Q9Y4B6 1507 aa31.63■■■□□ 2.65
SOD1-201ENST00000270142 SCRIBQ14160 1630 aa31.31■■■□□ 2.6
SOD1-201ENST00000270142 SHROOM4Q9ULL8 1493 aa31.28■■■□□ 2.6
SOD1-201ENST00000270142 CC2D2AQ9P2K1 1620 aa30.99■■■□□ 2.55
SOD1-201ENST00000270142 EIF4G1Q04637 1599 aaKnown RBP30.95■■■□□ 2.54
SOD1-201ENST00000270142 CECR2Q9BXF3 1484 aa30.9■■■□□ 2.54
SOD1-201ENST00000270142 NCAPD3P42695 1498 aa29.96■■■□□ 2.39
SOD1-201ENST00000270142 ATAD2BQ9ULI0 1458 aa29.9■■■□□ 2.38
SOD1-201ENST00000270142 SMARCA4P51532 1647 aa29.86■■■□□ 2.37
SOD1-201ENST00000270142 SMARCA2P51531 1590 aa29.79■■■□□ 2.36
SOD1-201ENST00000270142 HMGXB3Q12766 1538 aa29.75■■■□□ 2.35
SOD1-201ENST00000270142 BAZ1AQ9NRL2 1556 aaPredicted RBP29.72■■■□□ 2.35
SOD1-201ENST00000270142 ERCC6Q03468 1493 aa29.61■■■□□ 2.33
SOD1-201ENST00000270142 BAZ1BQ9UIG0 1483 aaKnown RBP29.6■■■□□ 2.33
SOD1-201ENST00000270142 PEG3Q9GZU2 1588 aa29.57■■■□□ 2.32
SOD1-201ENST00000270142 CUX2O14529 1486 aa29.55■■■□□ 2.32
SOD1-201ENST00000270142 MROH2BQ7Z745 1585 aa29.53■■■□□ 2.32
SOD1-201ENST00000270142 NESP48681 1621 aa29.5■■■□□ 2.31
SOD1-201ENST00000270142 DNAJC5Q9H3Z4 198 aa29.46■■■□□ 2.31
SOD1-201ENST00000270142 LAMC3Q9Y6N6 1575 aa29.27■■■□□ 2.28
SOD1-201ENST00000270142 THOC2Q8NI27 1593 aaKnown RBP29.19■■■□□ 2.26
SOD1-201ENST00000270142 WIZO95785 1651 aa29.16■■■□□ 2.26
SOD1-201ENST00000270142 PDS5BQ9NTI5 1447 aa29.11■■■□□ 2.25
SOD1-201ENST00000270142 KIF21AQ7Z4S6 1674 aa29.09■■■□□ 2.25
SOD1-201ENST00000270142 CADPSQ9ULU8 1353 aa29.06■■■□□ 2.24
SOD1-201ENST00000270142 RSF1Q96T23 1441 aaPredicted RBP28.93■■■□□ 2.22
SOD1-201ENST00000270142 MRC2Q9UBG0 1479 aa28.87■■■□□ 2.21
SOD1-201ENST00000270142 WDR62O43379 1518 aa28.8■■■□□ 2.2
SOD1-201ENST00000270142 TOP2AP11388 1531 aaKnown RBP28.8■■■□□ 2.2
SOD1-201ENST00000270142 CEP164Q9UPV0 1460 aa28.76■■■□□ 2.19
SOD1-201ENST00000270142 CFTRP13569 1480 aa28.75■■■□□ 2.19
SOD1-201ENST00000270142 FANCD2Q9BXW9 1451 aa28.74■■■□□ 2.19
SOD1-201ENST00000270142 URB2Q14146 1524 aaKnown RBP28.51■■■□□ 2.15
SOD1-201ENST00000270142 CCDC88BA6NC98 1476 aa28.47■■■□□ 2.15
SOD1-201ENST00000270142 PRDM2Q13029 1718 aa28.41■■■□□ 2.14
SOD1-201ENST00000270142 TRIM41Q8WV44 630 aa28.21■■■□□ 2.11
SOD1-201ENST00000270142 TOPBP1Q92547 1522 aa28.2■■■□□ 2.1
SOD1-201ENST00000270142 OSCARQ8IYS5 282 aa28.18■■■□□ 2.1
SOD1-201ENST00000270142 IFT140Q96RY7 1462 aa28.18■■■□□ 2.1
SOD1-201ENST00000270142 ZNF608Q9ULD9 1512 aaPredicted RBP28.16■■■□□ 2.1
SOD1-201ENST00000270142 ABCC8Q09428 1581 aa28.11■■■□□ 2.09
SOD1-201ENST00000270142 DNMBPQ6XZF7 1577 aa28.09■■■□□ 2.09
SOD1-201ENST00000270142 EIF4G3O43432 1585 aaKnown RBP27.99■■■□□ 2.07
SOD1-201ENST00000270142 TARBP1Q13395 1621 aaKnown RBP27.94■■■□□ 2.06
SOD1-201ENST00000270142 POLA1P09884 1462 aaPredicted RBP27.93■■■□□ 2.06
SOD1-201ENST00000270142 AQRO60306 1485 aaKnown RBP eCLIP27.89■■■□□ 2.067e-7■■■■■ 35.6
SOD1-201ENST00000270142 RIMBP3CA6NJZ7 1639 aa27.84■■■□□ 2.05
SOD1-201ENST00000270142 RIMBP3BA6NNM3 1639 aa27.84■■■□□ 2.05
SOD1-201ENST00000270142 RIMBP3Q9UFD9 1639 aa27.84■■■□□ 2.05
SOD1-201ENST00000270142 RAD54L2Q9Y4B4 1467 aa27.83■■■□□ 2.04
SOD1-201ENST00000270142 SOGA1O94964 1423 aa27.77■■■□□ 2.04
SOD1-201ENST00000270142 ARHGEF11O15085 1522 aa27.77■■■□□ 2.04
SOD1-201ENST00000270142 FGD5Q6ZNL6 1462 aa27.76■■■□□ 2.03
SOD1-201ENST00000270142 CHD1O14646 1710 aa27.75■■■□□ 2.03
SOD1-201ENST00000270142 CUX1P39880 1505 aa27.74■■■□□ 2.03
SOD1-201ENST00000270142 TDRD9Q8NDG6 1382 aaKnown RBP27.72■■■□□ 2.03
SOD1-201ENST00000270142 FBLN2P98095 1184 aa27.68■■■□□ 2.02
SOD1-201ENST00000270142 SUPT5HO00267 1087 aaKnown RBP27.67■■■□□ 2.02
SOD1-201ENST00000270142 WDR97A6NE52 1622 aa27.64■■■□□ 2.02
SOD1-201ENST00000270142 SNAPC4Q5SXM2 1469 aa27.63■■■□□ 2.01
SOD1-201ENST00000270142 CYB5RLQ6IPT4 315 aa27.54■■■□□ 2
SOD1-201ENST00000270142 GRIN2BQ13224 1484 aa27.53■■■□□ 2
SOD1-201ENST00000270142 MAGI1Q96QZ7 1491 aaPredicted RBP27.52■■■□□ 2
SOD1-201ENST00000270142 ARAP1Q96P48 1450 aa27.51■■■□□ 2
SOD1-201ENST00000270142 CHMP7Q8WUX9 453 aaPredicted RBP27.48■■□□□ 1.99
SOD1-201ENST00000270142 CLASP1Q7Z460 1538 aa27.46■■□□□ 1.99
SOD1-201ENST00000270142 GAPVD1Q14C86 1478 aa27.44■■□□□ 1.98
SOD1-201ENST00000270142 ABCA10Q8WWZ4 1543 aa27.44■■□□□ 1.98
SOD1-201ENST00000270142 SYNJ2O15056 1496 aa27.44■■□□□ 1.98
SOD1-201ENST00000270142 SYNJ1O43426 1573 aa27.43■■□□□ 1.98
SOD1-201ENST00000270142 PBRM1Q86U86 1689 aa27.42■■□□□ 1.98
SOD1-201ENST00000270142 ABCA5Q8WWZ7 1642 aa27.39■■□□□ 1.98
SOD1-201ENST00000270142 WRNQ14191 1432 aaPredicted RBP eCLIP27.31■■□□□ 1.96
SOD1-201ENST00000270142 TOP2BQ02880 1626 aa27.29■■□□□ 1.96
SOD1-201ENST00000270142 BIVM-ERCC5R4GMW8 1640 aa27.29■■□□□ 1.96
SOD1-201ENST00000270142 TRHP20396 242 aaPredicted RBP27.2■■□□□ 1.94
SOD1-201ENST00000270142 ADAMTS12P58397 1594 aa27.19■■□□□ 1.94
SOD1-201ENST00000270142 GRIN2AQ12879 1464 aa27.19■■□□□ 1.94
SOD1-201ENST00000270142 NUP160Q12769 1436 aa27.11■■□□□ 1.93
SOD1-201ENST00000270142 CEP170Q5SW79 1584 aa27.1■■□□□ 1.93
SOD1-201ENST00000270142 FHAD1B1AJZ9 1412 aa27.1■■□□□ 1.93
SOD1-201ENST00000270142 ERICH3Q5RHP9 1530 aa27.08■■□□□ 1.93
SOD1-201ENST00000270142 ERCC6L2Q5T890 1561 aa27.05■■□□□ 1.92
SOD1-201ENST00000270142 SHROOM2Q13796 1616 aa26.96■■□□□ 1.91
SOD1-201ENST00000270142 PRG4Q92954 1404 aaPredicted RBP26.82■■□□□ 1.88
SOD1-201ENST00000270142 RUSC2Q8N2Y8 1516 aa26.8■■□□□ 1.88
SOD1-201ENST00000270142 JPH4Q96JJ6 628 aa26.8■■□□□ 1.88
SOD1-201ENST00000270142 KIF27Q86VH2 1401 aa26.75■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms