RNA–Protein interactions for RNA: ENST00000370651.5

PTP4A1-201, Transcript of protein tyrosine phosphatase type IVA, member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTP4A1, Length 5,088 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1-201ENST00000370651 DCAF8L2P0C7V8 631 aa28.87■■■□□ 2.21
PTP4A1-201ENST00000370651 SUPT5HO00267 1087 aaKnown RBP28.2■■■□□ 2.11
PTP4A1-201ENST00000370651 NISCHQ9Y2I1 1504 aa28.19■■■□□ 2.1
PTP4A1-201ENST00000370651 SHROOM4Q9ULL8 1493 aa27.58■■■□□ 2.01
PTP4A1-201ENST00000370651 PELP1Q8IZL8 1130 aaKnown RBP27.1■■□□□ 1.93
PTP4A1-201ENST00000370651 EHMT2Q96KQ7 1210 aa27.09■■□□□ 1.93
PTP4A1-201ENST00000370651 PCGF6Q9BYE7 350 aa26.96■■□□□ 1.91
PTP4A1-201ENST00000370651 FAM9AQ8IZU1 332 aaPredicted RBP26.54■■□□□ 1.84
PTP4A1-201ENST00000370651 APLP2Q06481 763 aa26.53■■□□□ 1.84
PTP4A1-201ENST00000370651 ZEB1P37275 1124 aaPredicted RBP26.51■■□□□ 1.83
PTP4A1-201ENST00000370651 CENPBP07199 599 aaPredicted RBP26.47■■□□□ 1.83
PTP4A1-201ENST00000370651 TTBK1Q5TCY1 1321 aaPredicted RBP26.3■■□□□ 1.8
PTP4A1-201ENST00000370651 CCER1Q8TC90 406 aaPredicted RBP26.2■■□□□ 1.78
PTP4A1-201ENST00000370651 TRIM41Q8WV44 630 aa26.09■■□□□ 1.77
PTP4A1-201ENST00000370651 MYT1Q01538 1121 aa26.06■■□□□ 1.76
PTP4A1-201ENST00000370651 HRCP23327 699 aa25.97■■□□□ 1.75
PTP4A1-201ENST00000370651 ERICH6Q7L0X2 663 aa25.95■■□□□ 1.74
PTP4A1-201ENST00000370651 TRIM26Q12899 539 aaPredicted RBP25.79■■□□□ 1.72
PTP4A1-201ENST00000370651 YTHDC1Q96MU7 727 aaKnown RBP25.77■■□□□ 1.72
PTP4A1-201ENST00000370651 RANGAP1P46060 587 aaPredicted RBP25.72■■□□□ 1.71
PTP4A1-201ENST00000370651 UBTFP17480 764 aaKnown RBP25.63■■□□□ 1.69
PTP4A1-201ENST00000370651 NEFLP07196 543 aa25.61■■□□□ 1.69
PTP4A1-201ENST00000370651 PPARGC1BQ86YN6 1023 aaKnown RBP25.55■■□□□ 1.68
PTP4A1-201ENST00000370651 CHIC1Q5VXU3 224 aa25.43■■□□□ 1.66
PTP4A1-201ENST00000370651 LOC105371045A0A1W2PR82 267 aa25.37■■□□□ 1.65
PTP4A1-201ENST00000370651 ATP1B4Q9UN42 357 aaPredicted RBP25.35■■□□□ 1.65
PTP4A1-201ENST00000370651 DIEXFQ68CQ4 756 aaKnown RBP24.99■■□□□ 1.59
PTP4A1-201ENST00000370651 HNRNPUL2Q1KMD3 747 aaKnown RBP24.95■■□□□ 1.58
PTP4A1-201ENST00000370651 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.94■■□□□ 1.58
PTP4A1-201ENST00000370651 ITGAEP38570 1179 aa24.86■■□□□ 1.57
PTP4A1-201ENST00000370651 GTF3C3Q9Y5Q9 886 aa24.72■■□□□ 1.55
PTP4A1-201ENST00000370651 DAXXQ9UER7 740 aaPredicted RBP24.69■■□□□ 1.54
PTP4A1-201ENST00000370651 POLR3GLQ9BT43 218 aa24.58■■□□□ 1.53
PTP4A1-201ENST00000370651 RTL5Q5HYW3 569 aaPredicted RBP24.45■■□□□ 1.5
PTP4A1-201ENST00000370651 ACIN1Q9UKV3 1341 aaKnown RBP24.44■■□□□ 1.5
PTP4A1-201ENST00000370651 CNGB1Q14028 1251 aaPredicted RBP24.42■■□□□ 1.5
PTP4A1-201ENST00000370651 ZNF316A6NFI3 1004 aaPredicted RBP24.36■■□□□ 1.49
PTP4A1-201ENST00000370651 BCANQ96GW7 911 aa24.35■■□□□ 1.49
PTP4A1-201ENST00000370651 FAM50AQ14320 339 aaKnown RBP24.2■■□□□ 1.46
PTP4A1-201ENST00000370651 NEUROD1Q13562 356 aa24.17■■□□□ 1.46
PTP4A1-201ENST00000370651 ANP32CO43423 234 aa24.15■■□□□ 1.46
PTP4A1-201ENST00000370651 CDK11AQ9UQ88 783 aaPredicted RBP24.15■■□□□ 1.46
PTP4A1-201ENST00000370651 CLSPNQ9HAW4 1339 aa24.09■■□□□ 1.45
PTP4A1-201ENST00000370651 DCAF1Q9Y4B6 1507 aa24.03■■□□□ 1.44
PTP4A1-201ENST00000370651 MYT1LQ9UL68 1186 aa24.01■■□□□ 1.43
PTP4A1-201ENST00000370651 TRIM52Q96A61 297 aa24■■□□□ 1.43
PTP4A1-201ENST00000370651 CSRNP3Q8WYN3 585 aa23.84■■□□□ 1.41
PTP4A1-201ENST00000370651 SCAF1Q9H7N4 1312 aaKnown RBP23.84■■□□□ 1.41
PTP4A1-201ENST00000370651 SLC4A1APQ9BWU0 796 aaKnown RBP23.83■■□□□ 1.41
PTP4A1-201ENST00000370651 FKBP8Q14318 412 aa23.75■■□□□ 1.39
PTP4A1-201ENST00000370651 ZNF326Q5BKZ1 582 aaKnown RBP23.74■■□□□ 1.39
PTP4A1-201ENST00000370651 ANP32AP39687 249 aaKnown RBP23.72■■□□□ 1.39
PTP4A1-201ENST00000370651 PABPN1Q86U42 306 aaKnown RBP eCLIP23.65■■□□□ 1.38
PTP4A1-201ENST00000370651 ABCC9O60706 1549 aa23.61■■□□□ 1.37
PTP4A1-201ENST00000370651 DDX10Q13206 875 aaKnown RBP23.52■■□□□ 1.36
PTP4A1-201ENST00000370651 NPM2Q86SE8 214 aaKnown RBP23.52■■□□□ 1.36
PTP4A1-201ENST00000370651 HNRNPUQ00839 825 aaKnown RBP eCLIP23.51■■□□□ 1.35
PTP4A1-201ENST00000370651 MIER1Q8N108 512 aa23.5■■□□□ 1.35
PTP4A1-201ENST00000370651 P3H3Q8IVL6 736 aa23.48■■□□□ 1.35
PTP4A1-201ENST00000370651 CANXP27824 592 aaKnown RBP23.46■■□□□ 1.35
PTP4A1-201ENST00000370651 TONSLQ96HA7 1378 aa23.44■■□□□ 1.34
PTP4A1-201ENST00000370651 MYO15BQ96JP2 1530 aa23.44■■□□□ 1.34
PTP4A1-201ENST00000370651 ZCCHC6Q5VYS8 1495 aaKnown RBP23.43■■□□□ 1.34
PTP4A1-201ENST00000370651 ZBTB47Q9UFB7 747 aaPredicted RBP23.4■■□□□ 1.34
PTP4A1-201ENST00000370651 EIF5BO60841 1220 aaKnown RBP23.35■■□□□ 1.33
PTP4A1-201ENST00000370651 FAM9BQ8IZU0 186 aa23.34■■□□□ 1.33
PTP4A1-201ENST00000370651 NBR1Q14596 966 aa23.25■■□□□ 1.31
PTP4A1-201ENST00000370651 CCDC136Q96JN2 1154 aa23.25■■□□□ 1.31
PTP4A1-201ENST00000370651 ARID3CA6NKF2 412 aa23.24■■□□□ 1.31
PTP4A1-201ENST00000370651 CCDC180Q9P1Z9 1646 aa23.2■■□□□ 1.3
PTP4A1-201ENST00000370651 BCL11AQ9H165 835 aa23.2■■□□□ 1.3
PTP4A1-201ENST00000370651 SCRIBQ14160 1630 aa23.17■■□□□ 1.3
PTP4A1-201ENST00000370651 ZNF777Q9ULD5 760 aaPredicted RBP23.15■■□□□ 1.3
PTP4A1-201ENST00000370651 IRX6P78412 446 aaPredicted RBP23.14■■□□□ 1.29
PTP4A1-201ENST00000370651 MRS2Q9HD23 443 aa23.14■■□□□ 1.29
PTP4A1-201ENST00000370651 NEFMP07197 916 aa23.13■■□□□ 1.29
PTP4A1-201ENST00000370651 ANP32EQ9BTT0 268 aa23.13■■□□□ 1.29
PTP4A1-201ENST00000370651 FBLN2P98095 1184 aa23.11■■□□□ 1.29
PTP4A1-201ENST00000370651 TMC1Q8TDI8 760 aa23.11■■□□□ 1.29
PTP4A1-201ENST00000370651 UPF2Q9HAU5 1272 aaKnown RBP23.1■■□□□ 1.29
PTP4A1-201ENST00000370651 SALL2Q9Y467 1007 aaPredicted RBP23.1■■□□□ 1.29
PTP4A1-201ENST00000370651 ANP32BQ92688 251 aaKnown RBP23.09■■□□□ 1.29
PTP4A1-201ENST00000370651 CLIP1P30622 1438 aa23.07■■□□□ 1.28
PTP4A1-201ENST00000370651 HIRIP3Q9BW71 556 aaPredicted RBP23.06■■□□□ 1.28
PTP4A1-201ENST00000370651 HSP90AA1P07900 732 aaKnown RBP23.03■■□□□ 1.28
PTP4A1-201ENST00000370651 GLIPR1L2Q4G1C9 344 aa23.01■■□□□ 1.27
PTP4A1-201ENST00000370651 CEP162Q5TB80 1403 aa23■■□□□ 1.27
PTP4A1-201ENST00000370651 CHIC2Q9UKJ5 165 aa22.99■■□□□ 1.27
PTP4A1-201ENST00000370651 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.97■■□□□ 1.27
PTP4A1-201ENST00000370651 EIF4G2P78344 907 aaKnown RBP eCLIP22.92■■□□□ 1.26
PTP4A1-201ENST00000370651 SLC24A1O60721 1099 aa22.92■■□□□ 1.26
PTP4A1-201ENST00000370651 EEA1Q15075 1411 aa22.9■■□□□ 1.26
PTP4A1-201ENST00000370651 GOLGA3Q08378 1498 aa22.88■■□□□ 1.25
PTP4A1-201ENST00000370651 SUPT16HQ9Y5B9 1047 aaKnown RBP22.87■■□□□ 1.25
PTP4A1-201ENST00000370651 RSF1Q96T23 1441 aaPredicted RBP22.85■■□□□ 1.25
PTP4A1-201ENST00000370651 MTUS2Q5JR59 1369 aa22.85■■□□□ 1.25
PTP4A1-201ENST00000370651 ARXQ96QS3 562 aa22.84■■□□□ 1.25
PTP4A1-201ENST00000370651 WDR43Q15061 677 aaKnown RBP eCLIP22.84■■□□□ 1.25
PTP4A1-201ENST00000370651 TNIKQ9UKE5 1360 aa22.8■■□□□ 1.24
PTP4A1-201ENST00000370651 DDRGK1Q96HY6 314 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms