RNA–Protein interactions for RNA: ENST00000357714.5

CD46-204, Transcript of CD46 molecule, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD46, Length 3,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-204ENST00000357714 NISCHQ9Y2I1 1504 aa14.74□□□□□ -0.05
CD46-204ENST00000357714 SHROOM4Q9ULL8 1493 aa13.07□□□□□ -0.32
CD46-204ENST00000357714 SUPT5HO00267 1087 aaKnown RBP13□□□□□ -0.33
CD46-204ENST00000357714 HRCP23327 699 aa12.85□□□□□ -0.35
CD46-204ENST00000357714 PCGF6Q9BYE7 350 aa12.72□□□□□ -0.37
CD46-204ENST00000357714 CHIC1Q5VXU3 224 aa12.68□□□□□ -0.38
CD46-204ENST00000357714 CCDC180Q9P1Z9 1646 aa12.65□□□□□ -0.38
CD46-204ENST00000357714 MYO15BQ96JP2 1530 aa12.63□□□□□ -0.39
CD46-204ENST00000357714 PPARGC1BQ86YN6 1023 aaKnown RBP12.61□□□□□ -0.39
CD46-204ENST00000357714 ZCCHC6Q5VYS8 1495 aaKnown RBP12.5□□□□□ -0.41
CD46-204ENST00000357714 DCAF8L2P0C7V8 631 aa12.5□□□□□ -0.41
CD46-204ENST00000357714 LOC105371045A0A1W2PR82 267 aa12.39□□□□□ -0.43
CD46-204ENST00000357714 DCAF1Q9Y4B6 1507 aa12.36□□□□□ -0.43
CD46-204ENST00000357714 TRIM26Q12899 539 aaPredicted RBP12.32□□□□□ -0.44
CD46-204ENST00000357714 PELP1Q8IZL8 1130 aaKnown RBP12.29□□□□□ -0.44
CD46-204ENST00000357714 ZEB1P37275 1124 aaPredicted RBP12.2□□□□□ -0.46
CD46-204ENST00000357714 SCAF1Q9H7N4 1312 aaKnown RBP12.08□□□□□ -0.48
CD46-204ENST00000357714 FAM9AQ8IZU1 332 aaPredicted RBP12.04□□□□□ -0.48
CD46-204ENST00000357714 TRIM41Q8WV44 630 aa12.04□□□□□ -0.48
CD46-204ENST00000357714 EHMT2Q96KQ7 1210 aa12□□□□□ -0.49
CD46-204ENST00000357714 RSF1Q96T23 1441 aaPredicted RBP11.85□□□□□ -0.51
CD46-204ENST00000357714 ACIN1Q9UKV3 1341 aaKnown RBP11.85□□□□□ -0.51
CD46-204ENST00000357714 CCER1Q8TC90 406 aaPredicted RBP11.84□□□□□ -0.51
CD46-204ENST00000357714 ABCC9O60706 1549 aa11.84□□□□□ -0.51
CD46-204ENST00000357714 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.83□□□□□ -0.51
CD46-204ENST00000357714 NEUROD1Q13562 356 aa11.81□□□□□ -0.52
CD46-204ENST00000357714 MYT1Q01538 1121 aa11.81□□□□□ -0.52
CD46-204ENST00000357714 CENPBP07199 599 aaPredicted RBP11.78□□□□□ -0.52
CD46-204ENST00000357714 GTF3C3Q9Y5Q9 886 aa11.77□□□□□ -0.53
CD46-204ENST00000357714 DIEXFQ68CQ4 756 aaKnown RBP11.75□□□□□ -0.53
CD46-204ENST00000357714 RB1CC1Q8TDY2 1594 aa11.74□□□□□ -0.53
CD46-204ENST00000357714 SCRIBQ14160 1630 aa11.71□□□□□ -0.53
CD46-204ENST00000357714 TTBK1Q5TCY1 1321 aaPredicted RBP11.69□□□□□ -0.54
CD46-204ENST00000357714 NACADO15069 1562 aa11.69□□□□□ -0.54
CD46-204ENST00000357714 YTHDC1Q96MU7 727 aaKnown RBP11.59□□□□□ -0.55
CD46-204ENST00000357714 CECR2Q9BXF3 1484 aa11.56□□□□□ -0.56
CD46-204ENST00000357714 ZNF316A6NFI3 1004 aaPredicted RBP11.55□□□□□ -0.56
CD46-204ENST00000357714 MROH2BQ7Z745 1585 aa11.51□□□□□ -0.57
CD46-204ENST00000357714 UBTFP17480 764 aaKnown RBP11.46□□□□□ -0.57
CD46-204ENST00000357714 CEP162Q5TB80 1403 aa11.46□□□□□ -0.58
CD46-204ENST00000357714 WRNQ14191 1432 aaPredicted RBP eCLIP11.45□□□□□ -0.58
CD46-204ENST00000357714 MIER1Q8N108 512 aa11.44□□□□□ -0.58
CD46-204ENST00000357714 WIZO95785 1651 aa11.44□□□□□ -0.58
CD46-204ENST00000357714 UNC13AQ9UPW8 1703 aa11.43□□□□□ -0.58
CD46-204ENST00000357714 HNRNPUL2Q1KMD3 747 aaKnown RBP11.41□□□□□ -0.58
CD46-204ENST00000357714 CCDC88BA6NC98 1476 aa11.39□□□□□ -0.59
CD46-204ENST00000357714 TNIKQ9UKE5 1360 aa11.39□□□□□ -0.59
CD46-204ENST00000357714 CSRNP3Q8WYN3 585 aa11.38□□□□□ -0.59
CD46-204ENST00000357714 ABCC8Q09428 1581 aa11.36□□□□□ -0.59
CD46-204ENST00000357714 SOGA1O94964 1423 aa11.36□□□□□ -0.59
CD46-204ENST00000357714 BAZ1AQ9NRL2 1556 aaPredicted RBP11.34□□□□□ -0.59
CD46-204ENST00000357714 EIF4G1Q04637 1599 aaKnown RBP11.31□□□□□ -0.6
CD46-204ENST00000357714 APLP2Q06481 763 aa11.3□□□□□ -0.6
CD46-204ENST00000357714 EEA1Q15075 1411 aa11.29□□□□□ -0.6
CD46-204ENST00000357714 RUSC2Q8N2Y8 1516 aa11.27□□□□□ -0.6
CD46-204ENST00000357714 GOLGA3Q08378 1498 aa11.26□□□□□ -0.61
CD46-204ENST00000357714 BICRAQ9NZM4 1560 aa11.26□□□□□ -0.61
CD46-204ENST00000357714 RANGAP1P46060 587 aaPredicted RBP11.24□□□□□ -0.61
CD46-204ENST00000357714 TOP2AP11388 1531 aaKnown RBP11.23□□□□□ -0.61
CD46-204ENST00000357714 SUPT16HQ9Y5B9 1047 aaKnown RBP11.21□□□□□ -0.62
CD46-204ENST00000357714 BCL11AQ9H165 835 aa11.2□□□□□ -0.62
CD46-204ENST00000357714 CLIP1P30622 1438 aa11.2□□□□□ -0.62
CD46-204ENST00000357714 CLSPNQ9HAW4 1339 aa11.2□□□□□ -0.62
CD46-204ENST00000357714 SMARCA2P51531 1590 aa11.19□□□□□ -0.62
CD46-204ENST00000357714 CEP164Q9UPV0 1460 aa11.16□□□□□ -0.62
CD46-204ENST00000357714 VPS8Q8N3P4 1428 aa11.15□□□□□ -0.62
CD46-204ENST00000357714 SMARCA4P51532 1647 aa11.13□□□□□ -0.63
CD46-204ENST00000357714 TSHZ2Q9NRE2 1034 aa11.11□□□□□ -0.63
CD46-204ENST00000357714 ANP32EQ9BTT0 268 aa11.1□□□□□ -0.63
CD46-204ENST00000357714 DHX57Q6P158 1386 aaKnown RBP11.09□□□□□ -0.63
CD46-204ENST00000357714 BCANQ96GW7 911 aa11.06□□□□□ -0.64
CD46-204ENST00000357714 RAPGEF2Q9Y4G8 1499 aa11.05□□□□□ -0.64
CD46-204ENST00000357714 KIF21BO75037 1637 aa11.05□□□□□ -0.64
CD46-204ENST00000357714 ITGAEP38570 1179 aa11.02□□□□□ -0.64
CD46-204ENST00000357714 BAZ1BQ9UIG0 1483 aaKnown RBP11.02□□□□□ -0.65
CD46-204ENST00000357714 PABPN1Q86U42 306 aaKnown RBP eCLIP11.01□□□□□ -0.65
CD46-204ENST00000357714 PEG3Q9GZU2 1588 aa11.01□□□□□ -0.65
CD46-204ENST00000357714 SYNJ1O43426 1573 aa11.01□□□□□ -0.65
CD46-204ENST00000357714 KANK4Q5T7N3 995 aaPredicted RBP11.01□□□□□ -0.65
CD46-204ENST00000357714 KCNH8Q96L42 1107 aa11.01□□□□□ -0.65
CD46-204ENST00000357714 FKBP8Q14318 412 aa10.99□□□□□ -0.65
CD46-204ENST00000357714 NEFLP07196 543 aa10.96□□□□□ -0.66
CD46-204ENST00000357714 DDX10Q13206 875 aaKnown RBP10.94□□□□□ -0.66
CD46-204ENST00000357714 CCNB3Q8WWL7 1395 aa10.92□□□□□ -0.66
CD46-204ENST00000357714 RRBP1Q9P2E9 1410 aaKnown RBP10.9□□□□□ -0.66
CD46-204ENST00000357714 ARAP1Q96P48 1450 aa10.9□□□□□ -0.67
CD46-204ENST00000357714 RBM19Q9Y4C8 960 aaKnown RBP10.89□□□□□ -0.67
CD46-204ENST00000357714 TRIM52Q96A61 297 aa10.88□□□□□ -0.67
CD46-204ENST00000357714 RAB3GAP2Q9H2M9 1393 aa10.87□□□□□ -0.67
CD46-204ENST00000357714 SIN3AQ96ST3 1273 aa10.85□□□□□ -0.67
CD46-204ENST00000357714 HIRIP3Q9BW71 556 aaPredicted RBP10.85□□□□□ -0.67
CD46-204ENST00000357714 PRXQ9BXM0 1461 aa10.84□□□□□ -0.67
CD46-204ENST00000357714 ANP32CO43423 234 aa10.84□□□□□ -0.67
CD46-204ENST00000357714 CUX2O14529 1486 aa10.84□□□□□ -0.67
CD46-204ENST00000357714 ERICH3Q5RHP9 1530 aa10.83□□□□□ -0.68
CD46-204ENST00000357714 ATAD2BQ9ULI0 1458 aa10.83□□□□□ -0.68
CD46-204ENST00000357714 FAM50AQ14320 339 aaKnown RBP10.82□□□□□ -0.68
CD46-204ENST00000357714 TOP2BQ02880 1626 aa10.81□□□□□ -0.68
CD46-204ENST00000357714 PRKCSHP14314 528 aaPredicted RBP10.81□□□□□ -0.68
CD46-204ENST00000357714 PPP1R15AO75807 674 aaPredicted RBP10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms