RNA–Protein interactions for RNA: ENST00000578299.1

PTP4A1-204, Transcript of protein tyrosine phosphatase type IVA, member 1, humanhuman

TSL 2 BASIC

Gene PTP4A1, Length 135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1-204ENST00000578299 AEBP2Q6ZN18 517 aaPredicted RBP11.3□□□□□ -0.6
PTP4A1-204ENST00000578299 CHIC1Q5VXU3 224 aa11.14□□□□□ -0.63
PTP4A1-204ENST00000578299 PHF23Q9BUL5 403 aaPredicted RBP9.78□□□□□ -0.84
PTP4A1-204ENST00000578299 SENP3Q9H4L4 574 aaPredicted RBP9.62□□□□□ -0.87
PTP4A1-204ENST00000578299 PLPPR3Q6T4P5 718 aa9.09□□□□□ -0.95
PTP4A1-204ENST00000578299 FOXD1Q16676 465 aa8.89□□□□□ -0.99
PTP4A1-204ENST00000578299 ADRA2BP18089 450 aa8.59□□□□□ -1.03
PTP4A1-204ENST00000578299 PPP6R1Q9UPN7 881 aa8.59□□□□□ -1.03
PTP4A1-204ENST00000578299 PIAS4Q8N2W9 510 aaPredicted RBP8.4□□□□□ -1.06
PTP4A1-204ENST00000578299 MSH5O43196 834 aa8.2□□□□□ -1.1
PTP4A1-204ENST00000578299 PPP4R3CPQ6ZMV5 832 aa8.01□□□□□ -1.13
PTP4A1-204ENST00000578299 SCAF1Q9H7N4 1312 aaKnown RBP7.92□□□□□ -1.14
PTP4A1-204ENST00000578299 KCNA4P22459 653 aa7.91□□□□□ -1.14
PTP4A1-204ENST00000578299 NCBP3Q53F19 620 aaKnown RBP7.85□□□□□ -1.15
PTP4A1-204ENST00000578299 CNKSR2Q8WXI2 1034 aa7.78□□□□□ -1.16
PTP4A1-204ENST00000578299 MAPK8IP2Q13387 824 aaPredicted RBP7.77□□□□□ -1.17
PTP4A1-204ENST00000578299 NPM3O75607 178 aaKnown RBP7.71□□□□□ -1.18
PTP4A1-204ENST00000578299 DMRT2Q9Y5R5 561 aa7.69□□□□□ -1.18
PTP4A1-204ENST00000578299 RNF216Q9NWF9 866 aaPredicted RBP7.61□□□□□ -1.19
PTP4A1-204ENST00000578299 SLC4A1APQ9BWU0 796 aaKnown RBP7.56□□□□□ -1.2
PTP4A1-204ENST00000578299 HOXD11P31277 338 aaPredicted RBP7.55□□□□□ -1.2
PTP4A1-204ENST00000578299 DNAJC5BQ9UF47 199 aa7.51□□□□□ -1.21
PTP4A1-204ENST00000578299 EHMT2Q96KQ7 1210 aa7.42□□□□□ -1.22
PTP4A1-204ENST00000578299 DCAF8L1A6NGE4 600 aa7.33□□□□□ -1.24
PTP4A1-204ENST00000578299 CSRNP3Q8WYN3 585 aa7.3□□□□□ -1.24
PTP4A1-204ENST00000578299 POTEDQ86YR6 584 aa7.29□□□□□ -1.24
PTP4A1-204ENST00000578299 FOXD4L1Q9NU39 408 aa7.27□□□□□ -1.25
PTP4A1-204ENST00000578299 ZBTB22O15209 634 aa7.26□□□□□ -1.25
PTP4A1-204ENST00000578299 SLC4A2P04920 1241 aa7.25□□□□□ -1.25
PTP4A1-204ENST00000578299 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.2□□□□□ -1.26
PTP4A1-204ENST00000578299 MYCNP04198 464 aaPredicted RBP7.14□□□□□ -1.27
PTP4A1-204ENST00000578299 U3KPZ7 1027 aaPredicted RBP7.08□□□□□ -1.28
PTP4A1-204ENST00000578299 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.06□□□□□ -1.28
PTP4A1-204ENST00000578299 HNRNPUL2Q1KMD3 747 aaKnown RBP7.06□□□□□ -1.28
PTP4A1-204ENST00000578299 ATXN8OSP0DMR3 200 aa7.03□□□□□ -1.28
PTP4A1-204ENST00000578299 SAMD1Q6SPF0 538 aaPredicted RBP7.03□□□□□ -1.28
PTP4A1-204ENST00000578299 RNF39Q9H2S5 420 aa7.01□□□□□ -1.29
PTP4A1-204ENST00000578299 APLP2Q06481 763 aa6.98□□□□□ -1.29
PTP4A1-204ENST00000578299 C1QBPQ07021 282 aaKnown RBP6.95□□□□□ -1.3
PTP4A1-204ENST00000578299 ATF5Q9Y2D1 282 aaPredicted RBP6.9□□□□□ -1.3
PTP4A1-204ENST00000578299 SPINK5Q9NQ38 1064 aaPredicted RBP6.84□□□□□ -1.31
PTP4A1-204ENST00000578299 ZNF219Q9P2Y4 722 aaPredicted RBP6.84□□□□□ -1.31
PTP4A1-204ENST00000578299 CAPN15O75808 1086 aa6.83□□□□□ -1.32
PTP4A1-204ENST00000578299 TRHP20396 242 aaPredicted RBP6.82□□□□□ -1.32
PTP4A1-204ENST00000578299 CACNB1Q02641 598 aaPredicted RBP6.77□□□□□ -1.33
PTP4A1-204ENST00000578299 POLA2Q14181 598 aa6.73□□□□□ -1.33
PTP4A1-204ENST00000578299 DSG3P32926 999 aa6.7□□□□□ -1.34
PTP4A1-204ENST00000578299 ABCB7O75027 752 aa6.69□□□□□ -1.34
PTP4A1-204ENST00000578299 ZBTB12Q9Y330 459 aaPredicted RBP6.66□□□□□ -1.34
PTP4A1-204ENST00000578299 FBLN2P98095 1184 aa6.65□□□□□ -1.34
PTP4A1-204ENST00000578299 MKRN4PQ13434 485 aaPredicted RBP6.62□□□□□ -1.35
PTP4A1-204ENST00000578299 FKBP8Q14318 412 aa6.6□□□□□ -1.35
PTP4A1-204ENST00000578299 SPDYE4A6NLX3 237 aa6.53□□□□□ -1.36
PTP4A1-204ENST00000578299 OSCARQ8IYS5 282 aa6.49□□□□□ -1.37
PTP4A1-204ENST00000578299 SPDYE2BA6NHP3 402 aa6.47□□□□□ -1.37
PTP4A1-204ENST00000578299 SPDYE6P0CI01 402 aa6.47□□□□□ -1.37
PTP4A1-204ENST00000578299 SPDYE2Q495Y8 402 aa6.47□□□□□ -1.37
PTP4A1-204ENST00000578299 ZNF692Q9BU19 519 aaPredicted RBP6.45□□□□□ -1.38
PTP4A1-204ENST00000578299 PROM2Q8N271 834 aa6.43□□□□□ -1.38
PTP4A1-204ENST00000578299 SSUH2Q9Y2M2 353 aa6.42□□□□□ -1.38
PTP4A1-204ENST00000578299 RBM42Q9BTD8 480 aaKnown RBP6.41□□□□□ -1.38
PTP4A1-204ENST00000578299 FBXO3Q9UK99 471 aa6.38□□□□□ -1.39
PTP4A1-204ENST00000578299 PABPN1Q86U42 306 aaKnown RBP eCLIP6.36□□□□□ -1.39
PTP4A1-204ENST00000578299 AKT1S1Q96B36 256 aa6.34□□□□□ -1.39
PTP4A1-204ENST00000578299 STAG3Q9UJ98 1225 aa6.29□□□□□ -1.4
PTP4A1-204ENST00000578299 VASPP50552 380 aaPredicted RBP6.27□□□□□ -1.41
PTP4A1-204ENST00000578299 REM2Q8IYK8 340 aaPredicted RBP6.26□□□□□ -1.41
PTP4A1-204ENST00000578299 SPDYE1Q8NFV5 336 aaPredicted RBP6.26□□□□□ -1.41
PTP4A1-204ENST00000578299 CLEC11AQ9Y240 323 aa6.21□□□□□ -1.42
PTP4A1-204ENST00000578299 PLCD3Q8N3E9 789 aa6.19□□□□□ -1.42
PTP4A1-204ENST00000578299 PITPNM1O00562 1244 aa6.18□□□□□ -1.42
PTP4A1-204ENST00000578299 PLEKHG5O94827 1062 aa6.18□□□□□ -1.42
PTP4A1-204ENST00000578299 PRR29P0C7W0 189 aa6.18□□□□□ -1.42
PTP4A1-204ENST00000578299 AMER1Q5JTC6 1135 aaPredicted RBP6.18□□□□□ -1.42
PTP4A1-204ENST00000578299 MIER1Q8N108 512 aa6.18□□□□□ -1.42
PTP4A1-204ENST00000578299 IFNLR1Q8IU57 520 aaPredicted RBP6.17□□□□□ -1.42
PTP4A1-204ENST00000578299 KLHL34Q8N239 644 aa6.15□□□□□ -1.42
PTP4A1-204ENST00000578299 RTN4Q9NQC3 1192 aaKnown RBP6.14□□□□□ -1.43
PTP4A1-204ENST00000578299 ZBTB47Q9UFB7 747 aaPredicted RBP6.14□□□□□ -1.43
PTP4A1-204ENST00000578299 SPOCK2Q92563 424 aa6.11□□□□□ -1.43
PTP4A1-204ENST00000578299 CREBZFQ9NS37 354 aa6.1□□□□□ -1.43
PTP4A1-204ENST00000578299 CHRDL2Q6WN34 429 aa6.09□□□□□ -1.43
PTP4A1-204ENST00000578299 FXR2P51116 673 aaKnown RBP eCLIP6.06□□□□□ -1.44
PTP4A1-204ENST00000578299 MNX1P50219 401 aaPredicted RBP6.04□□□□□ -1.44
PTP4A1-204ENST00000578299 NPM1P06748 294 aaKnown RBP eCLIP6.03□□□□□ -1.44
PTP4A1-204ENST00000578299 PRKAR2AP13861 404 aaKnown RBP6.03□□□□□ -1.44
PTP4A1-204ENST00000578299 CHADLQ6NUI6 762 aa6.02□□□□□ -1.45
PTP4A1-204ENST00000578299 PIP4P2Q8N4L2 257 aa6.02□□□□□ -1.45
PTP4A1-204ENST00000578299 NUBP1P53384 320 aa6.01□□□□□ -1.45
PTP4A1-204ENST00000578299 FARP1Q9Y4F1 1045 aaPredicted RBP6.01□□□□□ -1.45
PTP4A1-204ENST00000578299 PKD2Q13563 968 aa6□□□□□ -1.45
PTP4A1-204ENST00000578299 GSE1Q14687 1217 aa5.99□□□□□ -1.45
PTP4A1-204ENST00000578299 CIZ1Q9ULV3 898 aaPredicted RBP5.99□□□□□ -1.45
PTP4A1-204ENST00000578299 FAM212AQ96EL1 285 aa5.98□□□□□ -1.45
PTP4A1-204ENST00000578299 TRIM41Q8WV44 630 aa5.97□□□□□ -1.45
PTP4A1-204ENST00000578299 ECM2O94769 699 aaPredicted RBP5.96□□□□□ -1.46
PTP4A1-204ENST00000578299 DCAF8Q5TAQ9 597 aa5.96□□□□□ -1.46
PTP4A1-204ENST00000578299 RASEFQ8IZ41 740 aa5.96□□□□□ -1.46
PTP4A1-204ENST00000578299 PAK3O75914 559 aaPredicted RBP5.91□□□□□ -1.46
PTP4A1-204ENST00000578299 CHRM1P11229 460 aaPredicted RBP5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms