RNA–Protein interactions for RNA: ENST00000524356.1

PCM1-223, Transcript of pericentriolar material 1, humanhuman

TSL 2

Gene PCM1, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCM1-223ENST00000524356 AEBP2Q6ZN18 517 aaPredicted RBP32.76■■■□□ 2.83
PCM1-223ENST00000524356 CHIC1Q5VXU3 224 aa30.51■■■□□ 2.47
PCM1-223ENST00000524356 SENP3Q9H4L4 574 aaPredicted RBP27.92■■■□□ 2.06
PCM1-223ENST00000524356 PHF23Q9BUL5 403 aaPredicted RBP27.52■■■□□ 2
PCM1-223ENST00000524356 FOXD1Q16676 465 aa26.16■■□□□ 1.78
PCM1-223ENST00000524356 POTEDQ86YR6 584 aa25.02■■□□□ 1.6
PCM1-223ENST00000524356 MSH5O43196 834 aa24.61■■□□□ 1.53
PCM1-223ENST00000524356 PIAS4Q8N2W9 510 aaPredicted RBP24.27■■□□□ 1.48
PCM1-223ENST00000524356 PLPPR3Q6T4P5 718 aa24.09■■□□□ 1.45
PCM1-223ENST00000524356 PPP6R1Q9UPN7 881 aa24.08■■□□□ 1.45
PCM1-223ENST00000524356 ADRA2BP18089 450 aa23.94■■□□□ 1.42
PCM1-223ENST00000524356 MAPK8IP2Q13387 824 aaPredicted RBP22.17■■□□□ 1.14
PCM1-223ENST00000524356 DMRT2Q9Y5R5 561 aa22.08■■□□□ 1.13
PCM1-223ENST00000524356 SCAF1Q9H7N4 1312 aaKnown RBP21.78■■□□□ 1.08
PCM1-223ENST00000524356 CACNB1Q02641 598 aaPredicted RBP21.47■■□□□ 1.03
PCM1-223ENST00000524356 DCAF8L1A6NGE4 600 aa21.18■□□□□ 0.98
PCM1-223ENST00000524356 PPP4R3CPQ6ZMV5 832 aa21.08■□□□□ 0.97
PCM1-223ENST00000524356 HOXD11P31277 338 aaPredicted RBP21.07■□□□□ 0.96
PCM1-223ENST00000524356 RNF39Q9H2S5 420 aa21.01■□□□□ 0.95
PCM1-223ENST00000524356 CNKSR2Q8WXI2 1034 aa20.78■□□□□ 0.92
PCM1-223ENST00000524356 RNF216Q9NWF9 866 aaPredicted RBP20.74■□□□□ 0.91
PCM1-223ENST00000524356 C1QBPQ07021 282 aaKnown RBP20.61■□□□□ 0.89
PCM1-223ENST00000524356 DNAJC5BQ9UF47 199 aa20.4■□□□□ 0.86
PCM1-223ENST00000524356 NCBP3Q53F19 620 aaKnown RBP20.03■□□□□ 0.8
PCM1-223ENST00000524356 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.03■□□□□ 0.89e-10■□□□□ 10.3
PCM1-223ENST00000524356 NPM3O75607 178 aaKnown RBP19.84■□□□□ 0.77
PCM1-223ENST00000524356 U3KPZ7 1027 aaPredicted RBP19.61■□□□□ 0.73
PCM1-223ENST00000524356 SPINK5Q9NQ38 1064 aaPredicted RBP19.51■□□□□ 0.71
PCM1-223ENST00000524356 DSG3P32926 999 aa19.48■□□□□ 0.71
PCM1-223ENST00000524356 POTEHQ6S545 545 aa19.48■□□□□ 0.71
PCM1-223ENST00000524356 CAPN15O75808 1086 aa19.43■□□□□ 0.7
PCM1-223ENST00000524356 SLC4A2P04920 1241 aa19.11■□□□□ 0.65
PCM1-223ENST00000524356 TRHP20396 242 aaPredicted RBP19■□□□□ 0.63
PCM1-223ENST00000524356 ABCB7O75027 752 aa18.99■□□□□ 0.63
PCM1-223ENST00000524356 KCNA4P22459 653 aa18.98■□□□□ 0.63
PCM1-223ENST00000524356 ZNF219Q9P2Y4 722 aaPredicted RBP18.91■□□□□ 0.62
PCM1-223ENST00000524356 APLP2Q06481 763 aa18.86■□□□□ 0.61
PCM1-223ENST00000524356 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.75■□□□□ 0.59
PCM1-223ENST00000524356 HNRNPUL2Q1KMD3 747 aaKnown RBP18.75■□□□□ 0.59
PCM1-223ENST00000524356 SAMD1Q6SPF0 538 aaPredicted RBP18.64■□□□□ 0.57
PCM1-223ENST00000524356 RBM42Q9BTD8 480 aaKnown RBP18.53■□□□□ 0.56
PCM1-223ENST00000524356 CHRDL2Q6WN34 429 aa18.4■□□□□ 0.54
PCM1-223ENST00000524356 POLA2Q14181 598 aa18.37■□□□□ 0.53
PCM1-223ENST00000524356 MYCNP04198 464 aaPredicted RBP18.31■□□□□ 0.52
PCM1-223ENST00000524356 ATF5Q9Y2D1 282 aaPredicted RBP18.03■□□□□ 0.48
PCM1-223ENST00000524356 AKT1S1Q96B36 256 aa18.02■□□□□ 0.48
PCM1-223ENST00000524356 SP7Q8TDD2 431 aaPredicted RBP18■□□□□ 0.47
PCM1-223ENST00000524356 ZBTB12Q9Y330 459 aaPredicted RBP17.89■□□□□ 0.45
PCM1-223ENST00000524356 REM2Q8IYK8 340 aaPredicted RBP17.88■□□□□ 0.45
PCM1-223ENST00000524356 PIP4P2Q8N4L2 257 aa17.87■□□□□ 0.45
PCM1-223ENST00000524356 OSCARQ8IYS5 282 aa17.84■□□□□ 0.45
PCM1-223ENST00000524356 FOXD4L1Q9NU39 408 aa17.83■□□□□ 0.44
PCM1-223ENST00000524356 SLC4A1APQ9BWU0 796 aaKnown RBP17.77■□□□□ 0.44
PCM1-223ENST00000524356 PITPNM1O00562 1244 aa17.73■□□□□ 0.43
PCM1-223ENST00000524356 FXR2P51116 673 aaKnown RBP eCLIP17.66■□□□□ 0.422e-9■■■■□ 23.3
PCM1-223ENST00000524356 HAX1O00165 279 aa17.64■□□□□ 0.41
PCM1-223ENST00000524356 ZBTB22O15209 634 aa17.5■□□□□ 0.39
PCM1-223ENST00000524356 EVX2Q03828 476 aa17.48■□□□□ 0.39
PCM1-223ENST00000524356 SPDYE2BA6NHP3 402 aa17.33■□□□□ 0.36
PCM1-223ENST00000524356 SPDYE6P0CI01 402 aa17.33■□□□□ 0.36
PCM1-223ENST00000524356 SPDYE2Q495Y8 402 aa17.33■□□□□ 0.36
PCM1-223ENST00000524356 ATXN8OSP0DMR3 200 aa17.32■□□□□ 0.36
PCM1-223ENST00000524356 PRKAR2AP13861 404 aaKnown RBP17.23■□□□□ 0.35
PCM1-223ENST00000524356 FBLN2P98095 1184 aa17.23■□□□□ 0.35
PCM1-223ENST00000524356 CLEC11AQ9Y240 323 aa17.17■□□□□ 0.34
PCM1-223ENST00000524356 MKRN4PQ13434 485 aaPredicted RBP17.16■□□□□ 0.34
PCM1-223ENST00000524356 SPDYE1Q8NFV5 336 aaPredicted RBP17.14■□□□□ 0.33
PCM1-223ENST00000524356 C19orf67A6NJJ6 358 aa17.12■□□□□ 0.33
PCM1-223ENST00000524356 SSUH2Q9Y2M2 353 aa17.09■□□□□ 0.33
PCM1-223ENST00000524356 ZNF692Q9BU19 519 aaPredicted RBP17.04■□□□□ 0.32
PCM1-223ENST00000524356 GABBR2O75899 941 aa17■□□□□ 0.31
PCM1-223ENST00000524356 CHADLQ6NUI6 762 aa16.96■□□□□ 0.31
PCM1-223ENST00000524356 LHX8Q68G74 356 aa16.87■□□□□ 0.29
PCM1-223ENST00000524356 PRR29P0C7W0 189 aa16.79■□□□□ 0.28
PCM1-223ENST00000524356 PABPN1Q86U42 306 aaKnown RBP eCLIP16.79■□□□□ 0.28
PCM1-223ENST00000524356 POTEIP0CG38 1075 aa16.69■□□□□ 0.26
PCM1-223ENST00000524356 CD44P16070 742 aaKnown RBP16.64■□□□□ 0.25
PCM1-223ENST00000524356 FARP1Q9Y4F1 1045 aaPredicted RBP16.61■□□□□ 0.25
PCM1-223ENST00000524356 CLCN6P51797 869 aa16.44■□□□□ 0.22
PCM1-223ENST00000524356 ZNF579Q8NAF0 562 aaKnown RBP16.37■□□□□ 0.21
PCM1-223ENST00000524356 DCBLD2Q96PD2 775 aa16.37■□□□□ 0.21
PCM1-223ENST00000524356 ZRANB1Q9UGI0 708 aa16.32■□□□□ 0.2
PCM1-223ENST00000524356 CREBZFQ9NS37 354 aa16.31■□□□□ 0.2
PCM1-223ENST00000524356 GALR2O43603 387 aaPredicted RBP16.24■□□□□ 0.19
PCM1-223ENST00000524356 PLSCR2Q9NRY7 297 aa16.22■□□□□ 0.19
PCM1-223ENST00000524356 CSRNP3Q8WYN3 585 aa16.15■□□□□ 0.18
PCM1-223ENST00000524356 OTUD5Q96G74 571 aa16.15■□□□□ 0.18
PCM1-223ENST00000524356 STAG3Q9UJ98 1225 aa16.15■□□□□ 0.18
PCM1-223ENST00000524356 POTEB2H3BUK9 544 aa16.13■□□□□ 0.17
PCM1-223ENST00000524356 PHF12Q96QT6 1004 aa16.09■□□□□ 0.17
PCM1-223ENST00000524356 SPDYE4A6NLX3 237 aa16■□□□□ 0.15
PCM1-223ENST00000524356 PAK3O75914 559 aaPredicted RBP16■□□□□ 0.15
PCM1-223ENST00000524356 PELP1Q8IZL8 1130 aaKnown RBP16■□□□□ 0.15
PCM1-223ENST00000524356 MNX1P50219 401 aaPredicted RBP15.99■□□□□ 0.15
PCM1-223ENST00000524356 POTEMA6NI47 508 aa15.91■□□□□ 0.14
PCM1-223ENST00000524356 NPM1P06748 294 aaKnown RBP eCLIP15.9■□□□□ 0.14
PCM1-223ENST00000524356 POTEGQ6S5H5 508 aa15.86■□□□□ 0.13
PCM1-223ENST00000524356 ASTLQ6HA08 431 aaPredicted RBP15.85■□□□□ 0.13
PCM1-223ENST00000524356 MS4A3Q96HJ5 214 aa15.85■□□□□ 0.13
PCM1-223ENST00000524356 POTEJP0CG39 1038 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 125.7 ms