RNA–Protein interactions for RNA: ENST00000322875.8

CD46-201, Transcript of CD46 molecule, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CD46, Length 3,278 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-201ENST00000322875 NISCHQ9Y2I1 1504 aa14.93□□□□□ -0.02
CD46-201ENST00000322875 HRCP23327 699 aa13.35□□□□□ -0.27
CD46-201ENST00000322875 MYO15BQ96JP2 1530 aa13.06□□□□□ -0.32
CD46-201ENST00000322875 PELP1Q8IZL8 1130 aaKnown RBP12.95□□□□□ -0.34
CD46-201ENST00000322875 PPARGC1BQ86YN6 1023 aaKnown RBP12.93□□□□□ -0.34
CD46-201ENST00000322875 SHROOM4Q9ULL8 1493 aa12.91□□□□□ -0.34
CD46-201ENST00000322875 PCGF6Q9BYE7 350 aa12.89□□□□□ -0.35
CD46-201ENST00000322875 CHIC1Q5VXU3 224 aa12.87□□□□□ -0.35
CD46-201ENST00000322875 DCAF1Q9Y4B6 1507 aa12.87□□□□□ -0.35
CD46-201ENST00000322875 SUPT5HO00267 1087 aaKnown RBP12.86□□□□□ -0.35
CD46-201ENST00000322875 CCDC180Q9P1Z9 1646 aa12.85□□□□□ -0.35
CD46-201ENST00000322875 ZCCHC6Q5VYS8 1495 aaKnown RBP12.75□□□□□ -0.37
CD46-201ENST00000322875 SCAF1Q9H7N4 1312 aaKnown RBP12.62□□□□□ -0.39
CD46-201ENST00000322875 TRIM26Q12899 539 aaPredicted RBP12.59□□□□□ -0.39
CD46-201ENST00000322875 ZEB1P37275 1124 aaPredicted RBP12.52□□□□□ -0.41
CD46-201ENST00000322875 MYT1Q01538 1121 aa12.47□□□□□ -0.41
CD46-201ENST00000322875 LOC105371045A0A1W2PR82 267 aa12.47□□□□□ -0.41
CD46-201ENST00000322875 ABCC9O60706 1549 aa12.44□□□□□ -0.42
CD46-201ENST00000322875 ACIN1Q9UKV3 1341 aaKnown RBP12.3□□□□□ -0.44
CD46-201ENST00000322875 NEUROD1Q13562 356 aa12.23□□□□□ -0.45
CD46-201ENST00000322875 GTF3C3Q9Y5Q9 886 aa12.12□□□□□ -0.47
CD46-201ENST00000322875 RB1CC1Q8TDY2 1594 aa12.11□□□□□ -0.47
CD46-201ENST00000322875 NACADO15069 1562 aa12.09□□□□□ -0.47
CD46-201ENST00000322875 CENPBP07199 599 aaPredicted RBP12.05□□□□□ -0.48
CD46-201ENST00000322875 DIEXFQ68CQ4 756 aaKnown RBP12□□□□□ -0.49
CD46-201ENST00000322875 RSF1Q96T23 1441 aaPredicted RBP11.99□□□□□ -0.49
CD46-201ENST00000322875 TRIM41Q8WV44 630 aa11.97□□□□□ -0.49
CD46-201ENST00000322875 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.93□□□□□ -0.5
CD46-201ENST00000322875 DCAF8L2P0C7V8 631 aa11.93□□□□□ -0.5
CD46-201ENST00000322875 CCER1Q8TC90 406 aaPredicted RBP11.89□□□□□ -0.51
CD46-201ENST00000322875 WRNQ14191 1432 aaPredicted RBP eCLIP11.85□□□□□ -0.51
CD46-201ENST00000322875 FAM9AQ8IZU1 332 aaPredicted RBP11.83□□□□□ -0.52
CD46-201ENST00000322875 ZNF316A6NFI3 1004 aaPredicted RBP11.8□□□□□ -0.52
CD46-201ENST00000322875 EIF4G1Q04637 1599 aaKnown RBP11.79□□□□□ -0.52
CD46-201ENST00000322875 UNC13AQ9UPW8 1703 aa11.77□□□□□ -0.52
CD46-201ENST00000322875 TTBK1Q5TCY1 1321 aaPredicted RBP11.77□□□□□ -0.53
CD46-201ENST00000322875 SCRIBQ14160 1630 aa11.71□□□□□ -0.54
CD46-201ENST00000322875 MIER1Q8N108 512 aa11.71□□□□□ -0.54
CD46-201ENST00000322875 CLSPNQ9HAW4 1339 aa11.68□□□□□ -0.54
CD46-201ENST00000322875 EHMT2Q96KQ7 1210 aa11.66□□□□□ -0.54
CD46-201ENST00000322875 BICRAQ9NZM4 1560 aa11.66□□□□□ -0.54
CD46-201ENST00000322875 YTHDC1Q96MU7 727 aaKnown RBP11.65□□□□□ -0.54
CD46-201ENST00000322875 CEP162Q5TB80 1403 aa11.63□□□□□ -0.55
CD46-201ENST00000322875 MROH2BQ7Z745 1585 aa11.62□□□□□ -0.55
CD46-201ENST00000322875 ANP32EQ9BTT0 268 aa11.61□□□□□ -0.55
CD46-201ENST00000322875 TNIKQ9UKE5 1360 aa11.6□□□□□ -0.55
CD46-201ENST00000322875 WIZO95785 1651 aa11.6□□□□□ -0.55
CD46-201ENST00000322875 BAZ1AQ9NRL2 1556 aaPredicted RBP11.6□□□□□ -0.55
CD46-201ENST00000322875 SUPT16HQ9Y5B9 1047 aaKnown RBP11.6□□□□□ -0.55
CD46-201ENST00000322875 CECR2Q9BXF3 1484 aa11.59□□□□□ -0.55
CD46-201ENST00000322875 BCL11AQ9H165 835 aa11.59□□□□□ -0.55
CD46-201ENST00000322875 TSHZ2Q9NRE2 1034 aa11.57□□□□□ -0.56
CD46-201ENST00000322875 CCDC88BA6NC98 1476 aa11.53□□□□□ -0.56
CD46-201ENST00000322875 PABPN1Q86U42 306 aaKnown RBP eCLIP11.52□□□□□ -0.57
CD46-201ENST00000322875 ABCC8Q09428 1581 aa11.51□□□□□ -0.57
CD46-201ENST00000322875 DNAJC5BQ9UF47 199 aa11.5□□□□□ -0.57
CD46-201ENST00000322875 EEA1Q15075 1411 aa11.49□□□□□ -0.57
CD46-201ENST00000322875 SOGA1O94964 1423 aa11.46□□□□□ -0.57
CD46-201ENST00000322875 CSRNP3Q8WYN3 585 aa11.45□□□□□ -0.58
CD46-201ENST00000322875 GOLGA3Q08378 1498 aa11.42□□□□□ -0.58
CD46-201ENST00000322875 TOP2AP11388 1531 aaKnown RBP11.42□□□□□ -0.58
CD46-201ENST00000322875 RUSC2Q8N2Y8 1516 aa11.4□□□□□ -0.58
CD46-201ENST00000322875 SMARCA2P51531 1590 aa11.39□□□□□ -0.59
CD46-201ENST00000322875 KIF21BO75037 1637 aa11.38□□□□□ -0.59
CD46-201ENST00000322875 DHX57Q6P158 1386 aaKnown RBP11.36□□□□□ -0.59
CD46-201ENST00000322875 CC2D2AQ9P2K1 1620 aa11.35□□□□□ -0.59
CD46-201ENST00000322875 HNRNPUL2Q1KMD3 747 aaKnown RBP11.34□□□□□ -0.59
CD46-201ENST00000322875 VPS8Q8N3P4 1428 aa11.34□□□□□ -0.59
CD46-201ENST00000322875 CLIP1P30622 1438 aa11.33□□□□□ -0.6
CD46-201ENST00000322875 CEP164Q9UPV0 1460 aa11.31□□□□□ -0.6
CD46-201ENST00000322875 CUX2O14529 1486 aa11.29□□□□□ -0.6
CD46-201ENST00000322875 BAZ1BQ9UIG0 1483 aaKnown RBP11.29□□□□□ -0.6
CD46-201ENST00000322875 UBTFP17480 764 aaKnown RBP11.28□□□□□ -0.6
CD46-201ENST00000322875 SMARCA4P51532 1647 aa11.27□□□□□ -0.6
CD46-201ENST00000322875 RBM19Q9Y4C8 960 aaKnown RBP11.27□□□□□ -0.61
CD46-201ENST00000322875 KCNH8Q96L42 1107 aa11.22□□□□□ -0.61
CD46-201ENST00000322875 MSH5O43196 834 aa11.22□□□□□ -0.61
CD46-201ENST00000322875 RRBP1Q9P2E9 1410 aaKnown RBP11.21□□□□□ -0.62
CD46-201ENST00000322875 SYNJ1O43426 1573 aa11.2□□□□□ -0.62
CD46-201ENST00000322875 FKBP8Q14318 412 aa11.19□□□□□ -0.62
CD46-201ENST00000322875 FANCIQ9NVI1 1328 aa11.17□□□□□ -0.62
CD46-201ENST00000322875 RAPGEF2Q9Y4G8 1499 aa11.17□□□□□ -0.62
CD46-201ENST00000322875 MAPKBP1O60336 1514 aa11.16□□□□□ -0.62
CD46-201ENST00000322875 BCANQ96GW7 911 aa11.15□□□□□ -0.62
CD46-201ENST00000322875 PRKCSHP14314 528 aaPredicted RBP11.14□□□□□ -0.63
CD46-201ENST00000322875 ARAP1Q96P48 1450 aa11.13□□□□□ -0.63
CD46-201ENST00000322875 NCAPD3P42695 1498 aa11.11□□□□□ -0.63
CD46-201ENST00000322875 PPP1R15AO75807 674 aaPredicted RBP11.1□□□□□ -0.63
CD46-201ENST00000322875 ERICH3Q5RHP9 1530 aa11.1□□□□□ -0.63
CD46-201ENST00000322875 PEG3Q9GZU2 1588 aa11.1□□□□□ -0.63
CD46-201ENST00000322875 APLP2Q06481 763 aa11.1□□□□□ -0.63
CD46-201ENST00000322875 CCER2I3L3R5 266 aa11.08□□□□□ -0.64
CD46-201ENST00000322875 WDR97A6NE52 1622 aa11.08□□□□□ -0.64
CD46-201ENST00000322875 HMGXB3Q12766 1538 aa11.07□□□□□ -0.64
CD46-201ENST00000322875 KANK4Q5T7N3 995 aaPredicted RBP11.06□□□□□ -0.64
CD46-201ENST00000322875 MYT1LQ9UL68 1186 aa11.06□□□□□ -0.64
CD46-201ENST00000322875 PRXQ9BXM0 1461 aa11.05□□□□□ -0.64
CD46-201ENST00000322875 NEFLP07196 543 aa11.04□□□□□ -0.64
CD46-201ENST00000322875 CCNB3Q8WWL7 1395 aa11.04□□□□□ -0.64
CD46-201ENST00000322875 ITGAEP38570 1179 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms