RNA–Protein interactions for RNA: ENST00000524226.5

PCM1-222, Transcript of pericentriolar material 1, human

TSL 1 (best) BASIC

Gene PCM1, Length 5,955 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCM1-222	ENST00000524226	NISCH	Q9Y2I1	1504 aa		5.29	□□□□□ -1.56
PCM1-222	ENST00000524226	CCDC180	Q9P1Z9	1646 aa		4.6	□□□□□ -1.67
PCM1-222	ENST00000524226	DCAF8L2	P0C7V8	631 aa		4.58	□□□□□ -1.68
PCM1-222	ENST00000524226	ZCCHC6	Q5VYS8	1495 aa	Known RBP	4.45	□□□□□ -1.7
PCM1-222	ENST00000524226	SHROOM4	Q9ULL8	1493 aa		4.44	□□□□□ -1.7
PCM1-222	ENST00000524226	DCAF1	Q9Y4B6	1507 aa		4.36	□□□□□ -1.71
PCM1-222	ENST00000524226	ABCC9	O60706	1549 aa		4.33	□□□□□ -1.72
PCM1-222	ENST00000524226	SUPT5H	O00267	1087 aa	Known RBP	4.32	□□□□□ -1.72
PCM1-222	ENST00000524226	NACAD	O15069	1562 aa		4.28	□□□□□ -1.72
PCM1-222	ENST00000524226	MYO15B	Q96JP2	1530 aa		4.28	□□□□□ -1.72
PCM1-222	ENST00000524226	SCRIB	Q14160	1630 aa		4.27	□□□□□ -1.73
PCM1-222	ENST00000524226	FAM9A	Q8IZU1	332 aa	Predicted RBP	4.26	□□□□□ -1.73
PCM1-222	ENST00000524226	RB1CC1	Q8TDY2	1594 aa		4.26	□□□□□ -1.73
PCM1-222	ENST00000524226	PELP1	Q8IZL8	1130 aa	Known RBP	4.2	□□□□□ -1.74
PCM1-222	ENST00000524226	RSF1	Q96T23	1441 aa	Predicted RBP	4.12	□□□□□ -1.75
PCM1-222	ENST00000524226	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	4.11	□□□□□ -1.75
PCM1-222	ENST00000524226	PABPN1	Q86U42	306 aa	Known RBP eCLIP	4.11	□□□□□ -1.75
PCM1-222	ENST00000524226	CHIC1	Q5VXU3	224 aa		4.09	□□□□□ -1.75
PCM1-222	ENST00000524226	UNC13A	Q9UPW8	1703 aa		4.09	□□□□□ -1.76
PCM1-222	ENST00000524226	CECR2	Q9BXF3	1484 aa		4.08	□□□□□ -1.76
PCM1-222	ENST00000524226	MROH2B	Q7Z745	1585 aa		4.08	□□□□□ -1.76
PCM1-222	ENST00000524226	TRIM41	Q8WV44	630 aa		4.07	□□□□□ -1.76
PCM1-222	ENST00000524226	SMARCA4	P51532	1647 aa		4.07	□□□□□ -1.76
PCM1-222	ENST00000524226	WIZ	O95785	1651 aa		4.06	□□□□□ -1.76
PCM1-222	ENST00000524226	TOP2A	P11388	1531 aa	Known RBP	4.04	□□□□□ -1.76
PCM1-222	ENST00000524226	BICRA	Q9NZM4	1560 aa		4.03	□□□□□ -1.76
PCM1-222	ENST00000524226	SMARCA2	P51531	1590 aa		4.02	□□□□□ -1.77
PCM1-222	ENST00000524226	BAZ1B	Q9UIG0	1483 aa	Known RBP	4.01	□□□□□ -1.77
PCM1-222	ENST00000524226	MYT1	Q01538	1121 aa		4.01	□□□□□ -1.77
PCM1-222	ENST00000524226	CCER1	Q8TC90	406 aa	Predicted RBP	4	□□□□□ -1.77
PCM1-222	ENST00000524226	CCDC88B	A6NC98	1476 aa		3.99	□□□□□ -1.77
PCM1-222	ENST00000524226	ATAD2B	Q9ULI0	1458 aa		3.97	□□□□□ -1.77
PCM1-222	ENST00000524226	MYT1L	Q9UL68	1186 aa		3.97	□□□□□ -1.77
PCM1-222	ENST00000524226	PEG3	Q9GZU2	1588 aa		3.97	□□□□□ -1.77
PCM1-222	ENST00000524226	EHMT2	Q96KQ7	1210 aa		3.97	□□□□□ -1.77
PCM1-222	ENST00000524226	EIF4G1	Q04637	1599 aa	Known RBP	3.96	□□□□□ -1.78
PCM1-222	ENST00000524226	LOC105371045	A0A1W2PR82	267 aa		3.95	□□□□□ -1.78
PCM1-222	ENST00000524226	HMGXB3	Q12766	1538 aa		3.94	□□□□□ -1.78
PCM1-222	ENST00000524226	ERICH6	Q7L0X2	663 aa		3.94	□□□□□ -1.78
PCM1-222	ENST00000524226	ABCC8	Q09428	1581 aa		3.93	□□□□□ -1.78
PCM1-222	ENST00000524226	APLP2	Q06481	763 aa		3.93	□□□□□ -1.78
PCM1-222	ENST00000524226	WRN	Q14191	1432 aa	Predicted RBP eCLIP	3.93	□□□□□ -1.78
PCM1-222	ENST00000524226	NCAPD3	P42695	1498 aa		3.92	□□□□□ -1.78
PCM1-222	ENST00000524226	EEA1	Q15075	1411 aa		3.92	□□□□□ -1.78
PCM1-222	ENST00000524226	UBTF	P17480	764 aa	Known RBP	3.91	□□□□□ -1.78
PCM1-222	ENST00000524226	ATP1B4	Q9UN42	357 aa	Predicted RBP	3.9	□□□□□ -1.78
PCM1-222	ENST00000524226	CENPB	P07199	599 aa	Predicted RBP	3.9	□□□□□ -1.79
PCM1-222	ENST00000524226	CC2D2A	Q9P2K1	1620 aa		3.9	□□□□□ -1.79
PCM1-222	ENST00000524226	PCGF6	Q9BYE7	350 aa		3.89	□□□□□ -1.79
PCM1-222	ENST00000524226	TTBK1	Q5TCY1	1321 aa	Predicted RBP	3.89	□□□□□ -1.79
PCM1-222	ENST00000524226	CSRNP3	Q8WYN3	585 aa		3.88	□□□□□ -1.79
PCM1-222	ENST00000524226	TRIM26	Q12899	539 aa	Predicted RBP	3.88	□□□□□ -1.79
PCM1-222	ENST00000524226	GOLGA3	Q08378	1498 aa		3.88	□□□□□ -1.79
PCM1-222	ENST00000524226	AEBP2	Q6ZN18	517 aa	Predicted RBP	3.88	□□□□□ -1.79
PCM1-222	ENST00000524226	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	3.87	□□□□□ -1.79
PCM1-222	ENST00000524226	HNRNPUL2	Q1KMD3	747 aa	Known RBP	3.87	□□□□□ -1.79
PCM1-222	ENST00000524226	ZEB1	P37275	1124 aa	Predicted RBP	3.87	□□□□□ -1.79
PCM1-222	ENST00000524226	CEP164	Q9UPV0	1460 aa		3.86	□□□□□ -1.79
PCM1-222	ENST00000524226	SOGA1	O94964	1423 aa		3.86	□□□□□ -1.79
PCM1-222	ENST00000524226	SYNJ1	O43426	1573 aa		3.86	□□□□□ -1.79
PCM1-222	ENST00000524226	YTHDC1	Q96MU7	727 aa	Known RBP	3.86	□□□□□ -1.79
PCM1-222	ENST00000524226	TOP2B	Q02880	1626 aa		3.86	□□□□□ -1.79
PCM1-222	ENST00000524226	CFTR	P13569	1480 aa		3.86	□□□□□ -1.79
PCM1-222	ENST00000524226	CADPS	Q9ULU8	1353 aa		3.86	□□□□□ -1.79
PCM1-222	ENST00000524226	PRDM2	Q13029	1718 aa		3.86	□□□□□ -1.79
PCM1-222	ENST00000524226	FBLN2	P98095	1184 aa		3.86	□□□□□ -1.79
PCM1-222	ENST00000524226	TNIK	Q9UKE5	1360 aa		3.85	□□□□□ -1.79
PCM1-222	ENST00000524226	RANGAP1	P46060	587 aa	Predicted RBP	3.85	□□□□□ -1.79
PCM1-222	ENST00000524226	BIVM-ERCC5	R4GMW8	1640 aa		3.84	□□□□□ -1.79
PCM1-222	ENST00000524226	KIF27	Q86VH2	1401 aa		3.84	□□□□□ -1.79
PCM1-222	ENST00000524226	CEP162	Q5TB80	1403 aa		3.84	□□□□□ -1.79
PCM1-222	ENST00000524226	NPM1	P06748	294 aa	Known RBP eCLIP	3.84	□□□□□ -1.8
PCM1-222	ENST00000524226	KIF21B	O75037	1637 aa		3.83	□□□□□ -1.8
PCM1-222	ENST00000524226	FANCD2	Q9BXW9	1451 aa		3.83	□□□□□ -1.8
PCM1-222	ENST00000524226	NEFL	P07196	543 aa		3.83	□□□□□ -1.8
PCM1-222	ENST00000524226	PDS5B	Q9NTI5	1447 aa		3.82	□□□□□ -1.8
PCM1-222	ENST00000524226	CUX1	P39880	1505 aa		3.82	□□□□□ -1.8
PCM1-222	ENST00000524226	RUSC2	Q8N2Y8	1516 aa		3.82	□□□□□ -1.8
PCM1-222	ENST00000524226	LAMC3	Q9Y6N6	1575 aa		3.81	□□□□□ -1.8
PCM1-222	ENST00000524226	ESF1	Q9H501	851 aa	Known RBP	3.81	□□□□□ -1.8
PCM1-222	ENST00000524226	CLIP1	P30622	1438 aa		3.81	□□□□□ -1.8
PCM1-222	ENST00000524226	CUX2	O14529	1486 aa		3.81	□□□□□ -1.8
PCM1-222	ENST00000524226	PPARGC1B	Q86YN6	1023 aa	Known RBP	3.81	□□□□□ -1.8
PCM1-222	ENST00000524226	TRH	P20396	242 aa	Predicted RBP	3.81	□□□□□ -1.8
PCM1-222	ENST00000524226	HRC	P23327	699 aa		3.8	□□□□□ -1.8
PCM1-222	ENST00000524226	DNMBP	Q6XZF7	1577 aa		3.8	□□□□□ -1.8
PCM1-222	ENST00000524226	ERICH3	Q5RHP9	1530 aa		3.8	□□□□□ -1.8
PCM1-222	ENST00000524226	FGD5	Q6ZNL6	1462 aa		3.8	□□□□□ -1.8
PCM1-222	ENST00000524226	ERCC6	Q03468	1493 aa		3.79	□□□□□ -1.8
PCM1-222	ENST00000524226	RAPGEF2	Q9Y4G8	1499 aa		3.79	□□□□□ -1.8
PCM1-222	ENST00000524226	NES	P48681	1621 aa		3.78	□□□□□ -1.8
PCM1-222	ENST00000524226	TOPBP1	Q92547	1522 aa		3.77	□□□□□ -1.81
PCM1-222	ENST00000524226	CARMIL1	Q5VZK9	1371 aa		3.77	□□□□□ -1.81
PCM1-222	ENST00000524226	VPS8	Q8N3P4	1428 aa		3.76	□□□□□ -1.81
PCM1-222	ENST00000524226	DAXX	Q9UER7	740 aa	Predicted RBP	3.76	□□□□□ -1.81
PCM1-222	ENST00000524226	PRX	Q9BXM0	1461 aa		3.76	□□□□□ -1.81
PCM1-222	ENST00000524226	PLPPR3	Q6T4P5	718 aa		3.76	□□□□□ -1.81
PCM1-222	ENST00000524226	MRC2	Q9UBG0	1479 aa		3.76	□□□□□ -1.81
PCM1-222	ENST00000524226	CUL7	Q14999	1698 aa		3.75	□□□□□ -1.81
PCM1-222	ENST00000524226	BCAN	Q96GW7	911 aa		3.75	□□□□□ -1.81

Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms