Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.786e-20■■□□□ 12
DDX55Q8NHQ9 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.716e-20■■□□□ 12
DDX55Q8NHQ9 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.436e-20■■□□□ 12
DDX55Q8NHQ9 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.316e-20■■□□□ 12
DDX55Q8NHQ9 PLD3-212ENST00000486134 327 ntTSL 216.71■□□□□ 0.276e-20■■□□□ 12
DDX55Q8NHQ9 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC20.76■□□□□ 0.919e-9■■□□□ 12
DDX55Q8NHQ9 CSNK1D-224ENST00000584672 401 ntTSL 318.1■□□□□ 0.499e-9■■□□□ 12
DDX55Q8NHQ9 CSNK1D-217ENST00000581241 6094 ntTSL 216.24■□□□□ 0.199e-9■■□□□ 12
DDX55Q8NHQ9 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.019e-9■■□□□ 12
DDX55Q8NHQ9 ADGRG6-202ENST00000296932 6849 ntTSL 1 (best) BASIC14.83□□□□□ -0.036e-15■■□□□ 12
DDX55Q8NHQ9 ADGRG6-204ENST00000367609 6887 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.056e-15■■□□□ 12
DDX55Q8NHQ9 ADGRG6-203ENST00000367608 6879 ntAPPRIS ALT1 TSL 1 (best) BASIC10.9□□□□□ -0.666e-15■■□□□ 12
DDX55Q8NHQ9 ADGRG6-201ENST00000230173 7026 ntTSL 1 (best) BASIC9.75□□□□□ -0.856e-15■■□□□ 12
DDX55Q8NHQ9 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC26.1■■□□□ 1.774e-11■■□□□ 12
DDX55Q8NHQ9 CTBP1-204ENST00000503594 1108 ntTSL 224.33■■□□□ 1.494e-11■■□□□ 12
DDX55Q8NHQ9 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.424e-11■■□□□ 12
DDX55Q8NHQ9 TBC1D10B-203ENST00000475650 2484 ntTSL 217.26■□□□□ 0.352e-15■■□□□ 12
DDX55Q8NHQ9 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.312e-15■■□□□ 12
DDX55Q8NHQ9 TBC1D10B-205ENST00000478158 4614 ntTSL 214□□□□□ -0.172e-15■■□□□ 12
DDX55Q8NHQ9 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.864e-9■■□□□ 12
DDX55Q8NHQ9 DPM2-205ENST00000495270 1662 ntTSL 1 (best)18.34■□□□□ 0.534e-9■■□□□ 12
DDX55Q8NHQ9 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC24.16■■□□□ 1.463e-10■■□□□ 12
DDX55Q8NHQ9 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC19.17■□□□□ 0.662e-8■■□□□ 12
DDX55Q8NHQ9 GANAB-208ENST00000528503 608 ntTSL 212.8□□□□□ -0.368e-16■■□□□ 12
DDX55Q8NHQ9 ACTR1A-207ENST00000636707 1046 ntTSL 515.33■□□□□ 0.041e-17■■□□□ 12
DDX55Q8NHQ9 ACTR1A-201ENST00000369905 2829 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.421e-17■■□□□ 12
DDX55Q8NHQ9 ESYT1-201ENST00000267113 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.491e-7■■□□□ 12
DDX55Q8NHQ9 ACTR1A-205ENST00000487599 2726 ntTSL 5 BASIC11.72□□□□□ -0.531e-17■■□□□ 12
DDX55Q8NHQ9 ACTR1A-202ENST00000470322 3519 ntTSL 29.73□□□□□ -0.851e-17■■□□□ 12
DDX55Q8NHQ9 C2orf82-206ENST00000467665 2782 ntTSL 1 (best)20.35■□□□□ 0.854e-7■■□□□ 12
DDX55Q8NHQ9 PPP2R1A-202ENST00000391791 979 ntTSL 221■□□□□ 0.958e-16■■□□□ 12
DDX55Q8NHQ9 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.511e-17■■□□□ 12
DDX55Q8NHQ9 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.341e-17■■□□□ 12
DDX55Q8NHQ9 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.061e-17■■□□□ 12
DDX55Q8NHQ9 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.961e-17■■□□□ 12
DDX55Q8NHQ9 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.961e-17■■□□□ 12
DDX55Q8NHQ9 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.951e-17■■□□□ 12
DDX55Q8NHQ9 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.181e-17■■□□□ 12
DDX55Q8NHQ9 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.181e-17■■□□□ 12
DDX55Q8NHQ9 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.881e-12■■□□□ 12
DDX55Q8NHQ9 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.741e-12■■□□□ 12
DDX55Q8NHQ9 CXXC5-208ENST00000505812 353 ntTSL 214.11□□□□□ -0.151e-12■■□□□ 12
DDX55Q8NHQ9 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.729e-7■■□□□ 12
DDX55Q8NHQ9 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC20.2■□□□□ 0.829e-7■■□□□ 12
DDX55Q8NHQ9 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.88■□□□□ 0.931e-16■■□□□ 12
DDX55Q8NHQ9 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC19.38■□□□□ 0.691e-16■■□□□ 12
DDX55Q8NHQ9 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.681e-16■■□□□ 12
DDX55Q8NHQ9 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.35■□□□□ 0.371e-16■■□□□ 12
DDX55Q8NHQ9 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.22■□□□□ 0.351e-16■■□□□ 12
DDX55Q8NHQ9 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC15.46■□□□□ 0.071e-16■■□□□ 12
DDX55Q8NHQ9 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -01e-16■■□□□ 12
DDX55Q8NHQ9 MYL6-208ENST00000547703 675 ntTSL 515.13■□□□□ 0.012e-19■■□□□ 12
DDX55Q8NHQ9 DNAJB2-210ENST00000472019 1419 ntTSL 329.99■■■□□ 2.392e-6■■□□□ 12
DDX55Q8NHQ9 COPS9-203ENST00000489698 640 ntTSL 229.94■■■□□ 2.382e-6■■□□□ 12
DDX55Q8NHQ9 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC28.41■■■□□ 2.142e-6■■□□□ 12
DDX55Q8NHQ9 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC27.73■■■□□ 2.032e-6■■□□□ 12
DDX55Q8NHQ9 ZNF444-210ENST00000592171 688 ntTSL 327.62■■■□□ 2.012e-6■■□□□ 12
DDX55Q8NHQ9 CYHR1-212ENST00000533764 853 ntTSL 227.11■■□□□ 1.932e-6■■□□□ 12
DDX55Q8NHQ9 ASB1-202ENST00000409297 878 ntTSL 5 BASIC26.82■■□□□ 1.882e-6■■□□□ 12
DDX55Q8NHQ9 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC25.96■■□□□ 1.752e-6■■□□□ 12
DDX55Q8NHQ9 TRA2A-206ENST00000482395 661 ntTSL 225.48■■□□□ 1.675e-42■■□□□ 12
DDX55Q8NHQ9 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC25.13■■□□□ 1.612e-6■■□□□ 12
DDX55Q8NHQ9 USP13-202ENST00000482333 1966 ntTSL 524.31■■□□□ 1.482e-6■■□□□ 12
DDX55Q8NHQ9 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC23.89■■□□□ 1.422e-6■■□□□ 12
DDX55Q8NHQ9 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC23.88■■□□□ 1.412e-6■■□□□ 12
DDX55Q8NHQ9 ZNF444-206ENST00000587664 568 ntTSL 323.84■■□□□ 1.412e-6■■□□□ 12
DDX55Q8NHQ9 NDUFA3-213ENST00000484103 541 ntTSL 1 (best)23.81■■□□□ 1.41e-8■■□□□ 12
DDX55Q8NHQ9 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC23.57■■□□□ 1.362e-6■■□□□ 12
DDX55Q8NHQ9 ERF-203ENST00000593944 555 ntTSL 423.12■■□□□ 1.292e-6■■□□□ 12
DDX55Q8NHQ9 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC22.61■■□□□ 1.212e-6■■□□□ 12
DDX55Q8NHQ9 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC22.45■■□□□ 1.182e-6■■□□□ 12
DDX55Q8NHQ9 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.182e-6■■□□□ 12
DDX55Q8NHQ9 PTPRU-207ENST00000492954 625 ntTSL 222.24■■□□□ 1.152e-6■■□□□ 12
DDX55Q8NHQ9 ASB1-203ENST00000438264 1048 ntTSL 321.71■■□□□ 1.072e-6■■□□□ 12
DDX55Q8NHQ9 CYHR1-206ENST00000526887 1012 ntTSL 321.36■■□□□ 1.012e-6■■□□□ 12
DDX55Q8NHQ9 ERF-206ENST00000596818 566 ntTSL 320.52■□□□□ 0.882e-6■■□□□ 12
DDX55Q8NHQ9 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC20.5■□□□□ 0.871e-8■■□□□ 12
DDX55Q8NHQ9 PTPRU-206ENST00000465525 1650 ntTSL 220.15■□□□□ 0.822e-6■■□□□ 12
DDX55Q8NHQ9 TINAGL1-208ENST00000480586 926 ntTSL 220.09■□□□□ 0.812e-6■■□□□ 12
DDX55Q8NHQ9 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.795e-42■■□□□ 12
DDX55Q8NHQ9 SH3TC1-222ENST00000512966 514 ntTSL 419.82■□□□□ 0.762e-6■■□□□ 12
DDX55Q8NHQ9 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.66■□□□□ 0.743e-12■■□□□ 12
DDX55Q8NHQ9 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC19.52■□□□□ 0.721e-8■■□□□ 12
DDX55Q8NHQ9 NDUFA3-206ENST00000419113 654 ntTSL 319.42■□□□□ 0.71e-8■■□□□ 12
DDX55Q8NHQ9 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC19.39■□□□□ 0.692e-6■■□□□ 12
DDX55Q8NHQ9 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.672e-6■■□□□ 12
DDX55Q8NHQ9 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC19.19■□□□□ 0.662e-6■■□□□ 12
DDX55Q8NHQ9 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.17■□□□□ 0.663e-12■■□□□ 12
DDX55Q8NHQ9 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.635e-42■■□□□ 12
DDX55Q8NHQ9 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.65e-42■■□□□ 12
DDX55Q8NHQ9 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.562e-6■■□□□ 12
DDX55Q8NHQ9 SUN2-216ENST00000477262 914 ntTSL 318.49■□□□□ 0.555e-7■■□□□ 12
DDX55Q8NHQ9 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.552e-6■■□□□ 12
DDX55Q8NHQ9 NDUFA3-205ENST00000417903 666 ntTSL 318.44■□□□□ 0.541e-8■■□□□ 12
DDX55Q8NHQ9 TMEM214-206ENST00000435172 1480 ntTSL 518.4■□□□□ 0.542e-6■■□□□ 12
DDX55Q8NHQ9 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.532e-6■■□□□ 12
DDX55Q8NHQ9 SUN2-214ENST00000469086 1351 ntTSL 518.33■□□□□ 0.535e-7■■□□□ 12
DDX55Q8NHQ9 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.522e-6■■□□□ 12
DDX55Q8NHQ9 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC18.26■□□□□ 0.511e-8■■□□□ 12
DDX55Q8NHQ9 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.395e-42■■□□□ 12
Retrieved 100 of 15,504 protein–RNA pairs in 139.8 ms