RNA–Protein interactions for RNA: ENST00000484103.1

NDUFA3-213, Transcript of NADH:ubiquinone oxidoreductase subunit A3, humanhuman

TSL 1 (best)

Gene NDUFA3, Length 541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDUFA3-213ENST00000484103 NISCHQ9Y2I1 1504 aa47.58■■■■■ 5.21
NDUFA3-213ENST00000484103 CCDC180Q9P1Z9 1646 aa42.52■■■■■ 4.4
NDUFA3-213ENST00000484103 ABCC9O60706 1549 aa42.51■■■■■ 4.39
NDUFA3-213ENST00000484103 RB1CC1Q8TDY2 1594 aa40.41■■■■■ 4.06
NDUFA3-213ENST00000484103 DCAF8L2P0C7V8 631 aa40.35■■■■■ 4.05
NDUFA3-213ENST00000484103 NACADO15069 1562 aa40.14■■■■■ 4.02
NDUFA3-213ENST00000484103 PABPN1Q86U42 306 aaKnown RBP eCLIP39.67■■■■□ 3.94
NDUFA3-213ENST00000484103 DNAJC5BQ9UF47 199 aa39.6■■■■□ 3.93
NDUFA3-213ENST00000484103 UNC13AQ9UPW8 1703 aa39.55■■■■□ 3.92
NDUFA3-213ENST00000484103 MYO15BQ96JP2 1530 aa39.53■■■■□ 3.92
NDUFA3-213ENST00000484103 ZCCHC6Q5VYS8 1495 aaKnown RBP39.48■■■■□ 3.91
NDUFA3-213ENST00000484103 BICRAQ9NZM4 1560 aa39.23■■■■□ 3.87
NDUFA3-213ENST00000484103 DCAF1Q9Y4B6 1507 aa39.17■■■■□ 3.86
NDUFA3-213ENST00000484103 SCRIBQ14160 1630 aa39■■■■□ 3.83
NDUFA3-213ENST00000484103 SHROOM4Q9ULL8 1493 aa38.54■■■■□ 3.76
NDUFA3-213ENST00000484103 CC2D2AQ9P2K1 1620 aa38.32■■■■□ 3.73
NDUFA3-213ENST00000484103 EIF4G1Q04637 1599 aaKnown RBP38.27■■■■□ 3.72
NDUFA3-213ENST00000484103 CECR2Q9BXF3 1484 aa38.18■■■■□ 3.7
NDUFA3-213ENST00000484103 SMARCA4P51532 1647 aa37.1■■■■□ 3.53
NDUFA3-213ENST00000484103 NCAPD3P42695 1498 aa37.04■■■■□ 3.52
NDUFA3-213ENST00000484103 ATAD2BQ9ULI0 1458 aa37.04■■■■□ 3.52
NDUFA3-213ENST00000484103 SMARCA2P51531 1590 aa36.92■■■■□ 3.5
NDUFA3-213ENST00000484103 BAZ1AQ9NRL2 1556 aaPredicted RBP36.91■■■■□ 3.5
NDUFA3-213ENST00000484103 HMGXB3Q12766 1538 aa36.8■■■■□ 3.48
NDUFA3-213ENST00000484103 BAZ1BQ9UIG0 1483 aaKnown RBP36.75■■■■□ 3.47
NDUFA3-213ENST00000484103 MROH2BQ7Z745 1585 aa36.74■■■■□ 3.47
NDUFA3-213ENST00000484103 ERCC6Q03468 1493 aa36.68■■■■□ 3.46
NDUFA3-213ENST00000484103 PEG3Q9GZU2 1588 aa36.59■■■■□ 3.45
NDUFA3-213ENST00000484103 NESP48681 1621 aa36.58■■■■□ 3.45
NDUFA3-213ENST00000484103 WIZO95785 1651 aa36.35■■■■□ 3.41
NDUFA3-213ENST00000484103 CUX2O14529 1486 aa36.35■■■■□ 3.41
NDUFA3-213ENST00000484103 LAMC3Q9Y6N6 1575 aa36.21■■■■□ 3.39
NDUFA3-213ENST00000484103 KIF21AQ7Z4S6 1674 aa36.08■■■■□ 3.37
NDUFA3-213ENST00000484103 DNAJC5Q9H3Z4 198 aa36.07■■■■□ 3.36
NDUFA3-213ENST00000484103 THOC2Q8NI27 1593 aaKnown RBP36.06■■■■□ 3.36
NDUFA3-213ENST00000484103 RSF1Q96T23 1441 aaPredicted RBP36.03■■■■□ 3.36
NDUFA3-213ENST00000484103 PDS5BQ9NTI5 1447 aa36.02■■■■□ 3.36
NDUFA3-213ENST00000484103 CADPSQ9ULU8 1353 aa35.99■■■■□ 3.35
NDUFA3-213ENST00000484103 TOP2AP11388 1531 aaKnown RBP35.83■■■■□ 3.33
NDUFA3-213ENST00000484103 MRC2Q9UBG0 1479 aa35.73■■■■□ 3.31
NDUFA3-213ENST00000484103 CEP164Q9UPV0 1460 aa35.66■■■■□ 3.3
NDUFA3-213ENST00000484103 FANCD2Q9BXW9 1451 aa35.65■■■■□ 3.3
NDUFA3-213ENST00000484103 CFTRP13569 1480 aa35.6■■■■□ 3.29
NDUFA3-213ENST00000484103 WDR62O43379 1518 aa35.58■■■■□ 3.29
NDUFA3-213ENST00000484103 CCDC88BA6NC98 1476 aa35.45■■■■□ 3.27
NDUFA3-213ENST00000484103 URB2Q14146 1524 aaKnown RBP35.34■■■■□ 3.25
NDUFA3-213ENST00000484103 PRDM2Q13029 1718 aa35.29■■■■□ 3.24
NDUFA3-213ENST00000484103 TOPBP1Q92547 1522 aa34.98■■■■□ 3.19
NDUFA3-213ENST00000484103 ZNF608Q9ULD9 1512 aaPredicted RBP34.91■■■■□ 3.18
NDUFA3-213ENST00000484103 IFT140Q96RY7 1462 aa34.89■■■■□ 3.18
NDUFA3-213ENST00000484103 SUPT5HO00267 1087 aaKnown RBP34.87■■■■□ 3.17
NDUFA3-213ENST00000484103 TRIM41Q8WV44 630 aa34.86■■■■□ 3.17
NDUFA3-213ENST00000484103 DNMBPQ6XZF7 1577 aa34.86■■■■□ 3.17
NDUFA3-213ENST00000484103 OSCARQ8IYS5 282 aa34.81■■■■□ 3.16
NDUFA3-213ENST00000484103 ABCC8Q09428 1581 aa34.81■■■■□ 3.16
NDUFA3-213ENST00000484103 EIF4G3O43432 1585 aaKnown RBP34.7■■■■□ 3.15
NDUFA3-213ENST00000484103 POLA1P09884 1462 aaPredicted RBP34.65■■■■□ 3.14
NDUFA3-213ENST00000484103 AQRO60306 1485 aaKnown RBP eCLIP34.63■■■■□ 3.13
NDUFA3-213ENST00000484103 TARBP1Q13395 1621 aaKnown RBP34.63■■■■□ 3.13
NDUFA3-213ENST00000484103 RAD54L2Q9Y4B4 1467 aa34.59■■■■□ 3.13
NDUFA3-213ENST00000484103 SOGA1O94964 1423 aa34.51■■■■□ 3.12
NDUFA3-213ENST00000484103 FGD5Q6ZNL6 1462 aa34.51■■■■□ 3.11
NDUFA3-213ENST00000484103 CUX1P39880 1505 aa34.5■■■■□ 3.11
NDUFA3-213ENST00000484103 FBLN2P98095 1184 aa34.47■■■■□ 3.11
NDUFA3-213ENST00000484103 TDRD9Q8NDG6 1382 aaKnown RBP34.47■■■■□ 3.11
NDUFA3-213ENST00000484103 CHD1O14646 1710 aa34.41■■■■□ 3.1
NDUFA3-213ENST00000484103 RIMBP3CA6NJZ7 1639 aa34.37■■■■□ 3.09
NDUFA3-213ENST00000484103 RIMBP3BA6NNM3 1639 aa34.37■■■■□ 3.09
NDUFA3-213ENST00000484103 RIMBP3Q9UFD9 1639 aa34.37■■■■□ 3.09
NDUFA3-213ENST00000484103 SNAPC4Q5SXM2 1469 aa34.28■■■■□ 3.08
NDUFA3-213ENST00000484103 ARHGEF11O15085 1522 aa34.26■■■■□ 3.08
NDUFA3-213ENST00000484103 WDR97A6NE52 1622 aa34.17■■■■□ 3.06
NDUFA3-213ENST00000484103 GRIN2BQ13224 1484 aa34.14■■■■□ 3.06
NDUFA3-213ENST00000484103 CHMP7Q8WUX9 453 aaPredicted RBP34.14■■■■□ 3.06
NDUFA3-213ENST00000484103 GAPVD1Q14C86 1478 aa34.09■■■■□ 3.05
NDUFA3-213ENST00000484103 CYB5RLQ6IPT4 315 aa34.09■■■■□ 3.05
NDUFA3-213ENST00000484103 PBRM1Q86U86 1689 aa34.09■■■■□ 3.05
NDUFA3-213ENST00000484103 MAGI1Q96QZ7 1491 aaPredicted RBP34.08■■■■□ 3.05
NDUFA3-213ENST00000484103 ABCA10Q8WWZ4 1543 aa34.04■■■■□ 3.04
NDUFA3-213ENST00000484103 WRNQ14191 1432 aaPredicted RBP eCLIP34.02■■■■□ 3.04
NDUFA3-213ENST00000484103 SYNJ1O43426 1573 aa34.02■■■■□ 3.04
NDUFA3-213ENST00000484103 SYNJ2O15056 1496 aa34■■■■□ 3.03
NDUFA3-213ENST00000484103 ABCA5Q8WWZ7 1642 aa33.99■■■■□ 3.03
NDUFA3-213ENST00000484103 TOP2BQ02880 1626 aa33.97■■■■□ 3.03
NDUFA3-213ENST00000484103 BIVM-ERCC5R4GMW8 1640 aa33.96■■■■□ 3.03
NDUFA3-213ENST00000484103 ARAP1Q96P48 1450 aa33.95■■■■□ 3.03
NDUFA3-213ENST00000484103 CLASP1Q7Z460 1538 aa33.94■■■■□ 3.02
NDUFA3-213ENST00000484103 ADAMTS12P58397 1594 aa33.75■■■□□ 2.99
NDUFA3-213ENST00000484103 GRIN2AQ12879 1464 aa33.72■■■□□ 2.99
NDUFA3-213ENST00000484103 TRHP20396 242 aaPredicted RBP33.7■■■□□ 2.99
NDUFA3-213ENST00000484103 FHAD1B1AJZ9 1412 aa33.63■■■□□ 2.97
NDUFA3-213ENST00000484103 CEP170Q5SW79 1584 aa33.63■■■□□ 2.97
NDUFA3-213ENST00000484103 ERICH3Q5RHP9 1530 aa33.6■■■□□ 2.97
NDUFA3-213ENST00000484103 ERCC6L2Q5T890 1561 aa33.55■■■□□ 2.96
NDUFA3-213ENST00000484103 NUP160Q12769 1436 aa33.53■■■□□ 2.96
NDUFA3-213ENST00000484103 SHROOM2Q13796 1616 aa33.35■■■□□ 2.93
NDUFA3-213ENST00000484103 KIF27Q86VH2 1401 aa33.33■■■□□ 2.93
NDUFA3-213ENST00000484103 PRG4Q92954 1404 aaPredicted RBP33.3■■■□□ 2.92
NDUFA3-213ENST00000484103 IGF1RP08069 1367 aa33.27■■■□□ 2.92
NDUFA3-213ENST00000484103 JPH4Q96JJ6 628 aa33.27■■■□□ 2.92
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms