RNA–Protein interactions for RNA: ENST00000156825.5

MBD3-201, Transcript of methyl-CpG binding domain protein 3, humanhuman

TSL 1 (best) BASIC

Gene MBD3, Length 5,518 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MBD3-201ENST00000156825 DCAF8L2P0C7V8 631 aa33.48■■■□□ 2.95
MBD3-201ENST00000156825 SUPT5HO00267 1087 aaKnown RBP31.73■■■□□ 2.67
MBD3-201ENST00000156825 NISCHQ9Y2I1 1504 aa31.43■■■□□ 2.62
MBD3-201ENST00000156825 SHROOM4Q9ULL8 1493 aa31.26■■■□□ 2.59
MBD3-201ENST00000156825 EHMT2Q96KQ7 1210 aa30.98■■■□□ 2.55
MBD3-201ENST00000156825 FAM9AQ8IZU1 332 aaPredicted RBP30.03■■■□□ 2.4
MBD3-201ENST00000156825 TTBK1Q5TCY1 1321 aaPredicted RBP29.85■■■□□ 2.37
MBD3-201ENST00000156825 APLP2Q06481 763 aa29.7■■■□□ 2.34
MBD3-201ENST00000156825 RANGAP1P46060 587 aaPredicted RBP29.52■■■□□ 2.32
MBD3-201ENST00000156825 PCGF6Q9BYE7 350 aa29.5■■■□□ 2.31
MBD3-201ENST00000156825 TRIM41Q8WV44 630 aa29.16■■■□□ 2.26
MBD3-201ENST00000156825 ATP1B4Q9UN42 357 aaPredicted RBP29.05■■■□□ 2.24
MBD3-201ENST00000156825 PELP1Q8IZL8 1130 aaKnown RBP29.01■■■□□ 2.23
MBD3-201ENST00000156825 UBTFP17480 764 aaKnown RBP28.87■■■□□ 2.21
MBD3-201ENST00000156825 CCER1Q8TC90 406 aaPredicted RBP28.83■■■□□ 2.21
MBD3-201ENST00000156825 PPARGC1BQ86YN6 1023 aaKnown RBP28.78■■■□□ 2.2
MBD3-201ENST00000156825 ZEB1P37275 1124 aaPredicted RBP28.4■■■□□ 2.14
MBD3-201ENST00000156825 CENPBP07199 599 aaPredicted RBP28.38■■■□□ 2.13
MBD3-201ENST00000156825 YTHDC1Q96MU7 727 aaKnown RBP28.33■■■□□ 2.13
MBD3-201ENST00000156825 LOC105371045A0A1W2PR82 267 aa28.22■■■□□ 2.11
MBD3-201ENST00000156825 ITGAEP38570 1179 aa28.15■■■□□ 2.1
MBD3-201ENST00000156825 ERICH6Q7L0X2 663 aa28.04■■■□□ 2.08
MBD3-201ENST00000156825 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.97■■■□□ 2.07
MBD3-201ENST00000156825 TRIM26Q12899 539 aaPredicted RBP27.97■■■□□ 2.07
MBD3-201ENST00000156825 HNRNPUL2Q1KMD3 747 aaKnown RBP27.97■■■□□ 2.07
MBD3-201ENST00000156825 CHIC1Q5VXU3 224 aa27.95■■■□□ 2.07
MBD3-201ENST00000156825 NEFLP07196 543 aa27.85■■■□□ 2.05
MBD3-201ENST00000156825 MYT1LQ9UL68 1186 aa27.82■■■□□ 2.04
MBD3-201ENST00000156825 POLR3GLQ9BT43 218 aa27.8■■■□□ 2.04
MBD3-201ENST00000156825 CNGB1Q14028 1251 aaPredicted RBP27.76■■■□□ 2.04
MBD3-201ENST00000156825 HRCP23327 699 aa27.7■■■□□ 2.03
MBD3-201ENST00000156825 PABPN1Q86U42 306 aaKnown RBP eCLIP27.65■■■□□ 2.023e-6■■■□□ 17.7
MBD3-201ENST00000156825 ABCC9O60706 1549 aa27.49■■□□□ 1.99
MBD3-201ENST00000156825 FAM50AQ14320 339 aaKnown RBP27.26■■□□□ 1.95
MBD3-201ENST00000156825 SLC4A1APQ9BWU0 796 aaKnown RBP27.19■■□□□ 1.94
MBD3-201ENST00000156825 NEUROD1Q13562 356 aa27.07■■□□□ 1.92
MBD3-201ENST00000156825 TRIM52Q96A61 297 aa27.06■■□□□ 1.92
MBD3-201ENST00000156825 DIEXFQ68CQ4 756 aaKnown RBP27.06■■□□□ 1.92
MBD3-201ENST00000156825 FBLN2P98095 1184 aa26.99■■□□□ 1.91
MBD3-201ENST00000156825 DAXXQ9UER7 740 aaPredicted RBP26.96■■□□□ 1.91
MBD3-201ENST00000156825 ARID3CA6NKF2 412 aa26.9■■□□□ 1.9
MBD3-201ENST00000156825 ZNF326Q5BKZ1 582 aaKnown RBP26.88■■□□□ 1.89
MBD3-201ENST00000156825 P3H3Q8IVL6 736 aa26.87■■□□□ 1.89
MBD3-201ENST00000156825 MYT1Q01538 1121 aa26.71■■□□□ 1.87
MBD3-201ENST00000156825 BCANQ96GW7 911 aa26.7■■□□□ 1.87
MBD3-201ENST00000156825 CLSPNQ9HAW4 1339 aa26.66■■□□□ 1.86
MBD3-201ENST00000156825 CSRNP3Q8WYN3 585 aa26.59■■□□□ 1.85
MBD3-201ENST00000156825 ZNF777Q9ULD5 760 aaPredicted RBP26.49■■□□□ 1.83
MBD3-201ENST00000156825 GTF3C3Q9Y5Q9 886 aa26.48■■□□□ 1.83
MBD3-201ENST00000156825 ANP32CO43423 234 aa26.47■■□□□ 1.83
MBD3-201ENST00000156825 BCL11AQ9H165 835 aa26.4■■□□□ 1.82
MBD3-201ENST00000156825 ZNF316A6NFI3 1004 aaPredicted RBP26.39■■□□□ 1.81
MBD3-201ENST00000156825 RTL5Q5HYW3 569 aaPredicted RBP26.28■■□□□ 1.8
MBD3-201ENST00000156825 SCRIBQ14160 1630 aa26.27■■□□□ 1.8
MBD3-201ENST00000156825 SLC24A1O60721 1099 aa26.26■■□□□ 1.79
MBD3-201ENST00000156825 CANXP27824 592 aaKnown RBP26.08■■□□□ 1.77
MBD3-201ENST00000156825 PLPPR3Q6T4P5 718 aa26.08■■□□□ 1.77
MBD3-201ENST00000156825 CHIC2Q9UKJ5 165 aa26.06■■□□□ 1.76
MBD3-201ENST00000156825 CDK11AQ9UQ88 783 aaPredicted RBP26.06■■□□□ 1.76
MBD3-201ENST00000156825 CHGAP10645 457 aaKnown RBP26.05■■□□□ 1.76
MBD3-201ENST00000156825 ZBTB47Q9UFB7 747 aaPredicted RBP26.01■■□□□ 1.75
MBD3-201ENST00000156825 ACIN1Q9UKV3 1341 aaKnown RBP25.97■■□□□ 1.75
MBD3-201ENST00000156825 DDX10Q13206 875 aaKnown RBP25.96■■□□□ 1.75
MBD3-201ENST00000156825 ZCCHC6Q5VYS8 1495 aaKnown RBP25.92■■□□□ 1.74
MBD3-201ENST00000156825 SALL2Q9Y467 1007 aaPredicted RBP25.92■■□□□ 1.74
MBD3-201ENST00000156825 TONSLQ96HA7 1378 aa25.92■■□□□ 1.74
MBD3-201ENST00000156825 NEFMP07197 916 aa25.91■■□□□ 1.74
MBD3-201ENST00000156825 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.91■■□□□ 1.742e-7■□□□□ 9.9
MBD3-201ENST00000156825 FAM9BQ8IZU0 186 aa25.85■■□□□ 1.73
MBD3-201ENST00000156825 ESF1Q9H501 851 aaKnown RBP25.85■■□□□ 1.73
MBD3-201ENST00000156825 STAG3Q9UJ98 1225 aa25.83■■□□□ 1.73
MBD3-201ENST00000156825 HIRIP3Q9BW71 556 aaPredicted RBP25.82■■□□□ 1.72
MBD3-201ENST00000156825 HNRNPUQ00839 825 aaKnown RBP eCLIP25.81■■□□□ 1.72
MBD3-201ENST00000156825 NPM2Q86SE8 214 aaKnown RBP25.81■■□□□ 1.72
MBD3-201ENST00000156825 FKBP8Q14318 412 aa25.8■■□□□ 1.72
MBD3-201ENST00000156825 SENP3Q9H4L4 574 aaPredicted RBP25.77■■□□□ 1.72
MBD3-201ENST00000156825 KDM2AQ9Y2K7 1162 aa25.76■■□□□ 1.71
MBD3-201ENST00000156825 NPM1P06748 294 aaKnown RBP eCLIP25.75■■□□□ 1.71
MBD3-201ENST00000156825 CHMP7Q8WUX9 453 aaPredicted RBP25.66■■□□□ 1.7
MBD3-201ENST00000156825 MTUS2Q5JR59 1369 aa25.64■■□□□ 1.69
MBD3-201ENST00000156825 DCAF1Q9Y4B6 1507 aa25.62■■□□□ 1.69
MBD3-201ENST00000156825 TSPY4P0CV99 314 aa25.62■■□□□ 1.69
MBD3-201ENST00000156825 TSPY10P0CW01 314 aa25.62■■□□□ 1.69
MBD3-201ENST00000156825 RRP7BPQ9NSQ0 103 aa25.62■■□□□ 1.69
MBD3-201ENST00000156825 ANP32AP39687 249 aaKnown RBP25.59■■□□□ 1.69
MBD3-201ENST00000156825 TMC1Q8TDI8 760 aa25.57■■□□□ 1.68
MBD3-201ENST00000156825 CLIP1P30622 1438 aa25.56■■□□□ 1.68
MBD3-201ENST00000156825 KCNH8Q96L42 1107 aa25.55■■□□□ 1.68
MBD3-201ENST00000156825 SENP3-EIF4A1A0A087X0R7 540 aa25.53■■□□□ 1.68
MBD3-201ENST00000156825 MIER1Q8N108 512 aa25.52■■□□□ 1.68
MBD3-201ENST00000156825 IRX6P78412 446 aaPredicted RBP25.5■■□□□ 1.67
MBD3-201ENST00000156825 MRS2Q9HD23 443 aa25.5■■□□□ 1.67
MBD3-201ENST00000156825 MYO15BQ96JP2 1530 aa25.5■■□□□ 1.67
MBD3-201ENST00000156825 PLEKHG5O94827 1062 aa25.47■■□□□ 1.67
MBD3-201ENST00000156825 RSF1Q96T23 1441 aaPredicted RBP25.43■■□□□ 1.66
MBD3-201ENST00000156825 RGL3Q3MIN7 710 aa25.41■■□□□ 1.66
MBD3-201ENST00000156825 CCDC136Q96JN2 1154 aa25.38■■□□□ 1.65
MBD3-201ENST00000156825 WDR43Q15061 677 aaKnown RBP eCLIP25.36■■□□□ 1.65
MBD3-201ENST00000156825 HSP90AA1P07900 732 aaKnown RBP25.35■■□□□ 1.65
MBD3-201ENST00000156825 SCAF1Q9H7N4 1312 aaKnown RBP25.33■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms