Protein–RNA interactions for Protein: Q9H0D6

XRN2, 5'-3' exoribonuclease 2, humanhuman

Known RBP eCLIP

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRN2Q9H0D6 PDCD4-201ENST00000280154 3602 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.844e-6■■■■□ 22.2
XRN2Q9H0D6 TNPO1-211ENST00000518279 563 ntTSL 420.7■□□□□ 0.92e-7■■■■□ 22.2
XRN2Q9H0D6 TNPO1-212ENST00000520850 863 ntTSL 218.96■□□□□ 0.632e-7■■■■□ 22.2
XRN2Q9H0D6 TNPO1-210ENST00000515483 549 ntTSL 418.78■□□□□ 0.62e-7■■■■□ 22.2
XRN2Q9H0D6 TNPO1-213ENST00000523768 2632 ntTSL 2 BASIC11.34□□□□□ -0.592e-7■■■■□ 22.2
XRN2Q9H0D6 TNPO1-201ENST00000337273 11183 ntTSL 1 (best) BASIC8.04□□□□□ -1.122e-7■■■■□ 22.2
XRN2Q9H0D6 TNPO1-204ENST00000506351 3028 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.212e-7■■■■□ 22.2
XRN2Q9H0D6 TNPO1-209ENST00000513944 569 ntTSL 42.96□□□□□ -1.942e-7■■■■□ 22.2
XRN2Q9H0D6 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.531e-6■■■■□ 22.2
XRN2Q9H0D6 ZBED4-201ENST00000216268 6893 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.72e-6■■■■□ 22.2
XRN2Q9H0D6 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC19.41■□□□□ 0.74e-7■■■■□ 22.2
XRN2Q9H0D6 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.58■□□□□ 0.084e-7■■■■□ 22.2
XRN2Q9H0D6 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.34e-7■■■■□ 22.2
XRN2Q9H0D6 MLXIPL-210ENST00000476404 1921 ntTSL 217.23■□□□□ 0.351e-12■■■■□ 22.2
XRN2Q9H0D6 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.372e-6■■■■□ 22.1
XRN2Q9H0D6 CIRBP-231ENST00000591097 1507 ntTSL 1 (best)27.11■■□□□ 1.934e-7■■■■□ 22.1
XRN2Q9H0D6 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC26.97■■□□□ 1.914e-7■■■■□ 22.1
XRN2Q9H0D6 CIRBP-224ENST00000589686 532 ntTSL 224.85■■□□□ 1.574e-7■■■■□ 22.1
XRN2Q9H0D6 CIRBP-226ENST00000590171 905 ntTSL 324.55■■□□□ 1.524e-7■■■■□ 22.1
XRN2Q9H0D6 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC24.55■■□□□ 1.524e-7■■■■□ 22.1
XRN2Q9H0D6 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC24.28■■□□□ 1.484e-7■■■■□ 22.1
XRN2Q9H0D6 CIRBP-229ENST00000590704 1456 ntTSL 224.25■■□□□ 1.474e-7■■■■□ 22.1
XRN2Q9H0D6 CIRBP-208ENST00000586548 1734 ntTSL 323.33■■□□□ 1.334e-7■■■■□ 22.1
XRN2Q9H0D6 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC23.33■■□□□ 1.324e-7■■■■□ 22.1
XRN2Q9H0D6 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC23.12■■□□□ 1.294e-7■■■■□ 22.1
XRN2Q9H0D6 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC22.63■■□□□ 1.214e-7■■■■□ 22.1
XRN2Q9H0D6 CIRBP-238ENST00000592412 532 ntTSL 422.57■■□□□ 1.24e-7■■■■□ 22.1
XRN2Q9H0D6 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.074e-7■■■■□ 22.1
XRN2Q9H0D6 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC21.77■■□□□ 1.074e-7■■■■□ 22.1
XRN2Q9H0D6 CIRBP-243ENST00000593128 796 ntTSL 321.71■■□□□ 1.074e-7■■■■□ 22.1
XRN2Q9H0D6 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.62■■□□□ 1.054e-7■■■■□ 22.1
XRN2Q9H0D6 CIRBP-244ENST00000593283 758 ntTSL 521.13■□□□□ 0.974e-7■■■■□ 22.1
XRN2Q9H0D6 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC20.82■□□□□ 0.924e-7■■■■□ 22.1
XRN2Q9H0D6 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC19.66■□□□□ 0.744e-7■■■■□ 22.1
XRN2Q9H0D6 CIRBP-241ENST00000593048 650 ntTSL 319.45■□□□□ 0.74e-7■■■■□ 22.1
XRN2Q9H0D6 CIRBP-230ENST00000591055 928 ntTSL 219.2■□□□□ 0.664e-7■■■■□ 22.1
XRN2Q9H0D6 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC14.29□□□□□ -0.122e-7■■■■□ 22.1
XRN2Q9H0D6 ATXN10-201ENST00000252934 3329 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.592e-7■■■■□ 22.1
XRN2Q9H0D6 WDR20-209ENST00000556094 785 ntTSL 321.5■■□□□ 1.034e-6■■■■□ 22.1
XRN2Q9H0D6 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.4■□□□□ 0.224e-6■■■■□ 22.1
XRN2Q9H0D6 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC15.2■□□□□ 0.024e-6■■■■□ 22.1
XRN2Q9H0D6 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC14.52□□□□□ -0.084e-6■■■■□ 22.1
XRN2Q9H0D6 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.183e-6■■■■□ 22.1
XRN2Q9H0D6 TCF25-226ENST00000640279 2688 ntTSL 515.43■□□□□ 0.063e-6■■■■□ 22.1
XRN2Q9H0D6 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.32■□□□□ 0.043e-6■■■■□ 22.1
XRN2Q9H0D6 PITPNA-210ENST00000576722 793 ntTSL 332.91■■■□□ 2.869e-8■■■■□ 22.1
XRN2Q9H0D6 PITPNA-207ENST00000575288 1264 ntTSL 232.31■■■□□ 2.769e-8■■■■□ 22.1
XRN2Q9H0D6 PITPNA-209ENST00000576010 573 ntTSL 530.91■■■□□ 2.549e-8■■■■□ 22.1
XRN2Q9H0D6 PITPNA-211ENST00000576761 589 ntTSL 430.91■■■□□ 2.549e-8■■■■□ 22.1
XRN2Q9H0D6 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.279e-8■■■■□ 22.1
XRN2Q9H0D6 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.229e-8■■■■□ 22.1
XRN2Q9H0D6 PITPNA-205ENST00000573231 504 ntTSL 411.72□□□□□ -0.539e-8■■■■□ 22.1
XRN2Q9H0D6 ATXN7L3-205ENST00000587097 1341 ntTSL 536.35■■■■□ 3.412e-6■■■■□ 22.1
XRN2Q9H0D6 ANKRD10-210ENST00000494859 705 ntTSL 535.32■■■■□ 3.242e-6■■■■□ 22
XRN2Q9H0D6 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC24.66■■□□□ 1.542e-6■■■■□ 22
XRN2Q9H0D6 ANKRD10-206ENST00000465753 997 ntTSL 1 (best)23.25■■□□□ 1.312e-6■■■■□ 22
XRN2Q9H0D6 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.482e-6■■■■□ 22
XRN2Q9H0D6 ANKRD10-203ENST00000460846 535 ntTSL 315.69■□□□□ 0.12e-6■■■■□ 22
XRN2Q9H0D6 POLR2E-208ENST00000591709 685 ntTSL 221.19■□□□□ 0.981e-6■■■■□ 22
XRN2Q9H0D6 POLR2E-212ENST00000614705 589 ntTSL 418.77■□□□□ 0.61e-6■■■■□ 22
XRN2Q9H0D6 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.43e-6■■■■□ 22
XRN2Q9H0D6 RORA-206ENST00000557822 545 ntTSL 419.53■□□□□ 0.723e-6■■■■□ 22
XRN2Q9H0D6 RORA-210ENST00000559343 577 ntTSL 414.53□□□□□ -0.083e-6■■■■□ 22
XRN2Q9H0D6 RORA-207ENST00000558234 3910 ntTSL 1 (best)12.93□□□□□ -0.343e-6■■■■□ 22
XRN2Q9H0D6 RORA-212ENST00000560004 544 ntTSL 412.92□□□□□ -0.343e-6■■■■□ 22
XRN2Q9H0D6 RORA-205ENST00000551975 749 ntTSL 312□□□□□ -0.493e-6■■■■□ 22
XRN2Q9H0D6 RORA-202ENST00000309157 1908 ntTSL 1 (best) BASIC8.35□□□□□ -1.073e-6■■■■□ 22
XRN2Q9H0D6 RORA-201ENST00000261523 1951 ntTSL 1 (best) BASIC7.48□□□□□ -1.213e-6■■■■□ 22
XRN2Q9H0D6 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC6.66□□□□□ -1.343e-6■■■■□ 22
XRN2Q9H0D6 SF3A2-202ENST00000586396 543 ntAPPRIS ALT2 TSL 318.59■□□□□ 0.571e-6■■■■□ 22
XRN2Q9H0D6 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.095e-7■■■■□ 22
XRN2Q9H0D6 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.142e-12■■■■□ 22
XRN2Q9H0D6 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC27.54■■■□□ 22e-6■■■■□ 22
XRN2Q9H0D6 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC27.49■■□□□ 1.992e-6■■■■□ 22
XRN2Q9H0D6 AC008741.2-201ENST00000612792 3115 ntBASIC15.73■□□□□ 0.113e-7■■■■□ 22
XRN2Q9H0D6 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.464e-13■■■■□ 22
XRN2Q9H0D6 ATXN2-218ENST00000549455 568 ntTSL 417.81■□□□□ 0.444e-13■■■■□ 22
XRN2Q9H0D6 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.324e-13■■■■□ 22
XRN2Q9H0D6 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.24e-13■■■■□ 22
XRN2Q9H0D6 ATXN2-226ENST00000608853 4376 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.464e-13■■■■□ 22
XRN2Q9H0D6 ATXN2-210ENST00000483311 4159 ntTSL 1 (best)12.01□□□□□ -0.494e-13■■■■□ 22
XRN2Q9H0D6 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC7.9□□□□□ -1.154e-13■■■■□ 22
XRN2Q9H0D6 ATXN2-214ENST00000535949 3205 ntAPPRIS ALT2 TSL 1 (best) BASIC7.75□□□□□ -1.174e-13■■■■□ 22
XRN2Q9H0D6 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.394e-13■■■■□ 22
XRN2Q9H0D6 ALDH3A2-223ENST00000584332 573 ntTSL 524.39■■□□□ 1.493e-6■■■■□ 22
XRN2Q9H0D6 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC24.39■■□□□ 1.493e-6■■■■□ 22
XRN2Q9H0D6 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC19.1■□□□□ 0.653e-6■■■■□ 22
XRN2Q9H0D6 ALDH3A2-216ENST00000578614 527 ntTSL 417.92■□□□□ 0.463e-6■■■■□ 22
XRN2Q9H0D6 ALDH3A2-222ENST00000582991 2152 ntTSL 517.36■□□□□ 0.373e-6■■■■□ 22
XRN2Q9H0D6 ALDH3A2-204ENST00000446398 665 ntTSL 515.92■□□□□ 0.143e-6■■■■□ 22
XRN2Q9H0D6 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.013e-6■■■■□ 22
XRN2Q9H0D6 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC12.91□□□□□ -0.343e-6■■■■□ 22
XRN2Q9H0D6 ALDH3A2-201ENST00000176643 3928 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.373e-6■■■■□ 22
XRN2Q9H0D6 ALDH3A2-203ENST00000395575 3640 ntAPPRIS P3 TSL 5 BASIC12.05□□□□□ -0.483e-6■■■■□ 22
XRN2Q9H0D6 ALDH3A2-219ENST00000579855 3583 ntAPPRIS P3 TSL 5 BASIC11.36□□□□□ -0.593e-6■■■■□ 22
XRN2Q9H0D6 ALDH3A2-202ENST00000339618 3828 ntAPPRIS ALT1 TSL 1 (best) BASIC11.22□□□□□ -0.613e-6■■■■□ 22
XRN2Q9H0D6 ALDH3A2-206ENST00000472059 3710 ntTSL 211.13□□□□□ -0.633e-6■■■■□ 22
XRN2Q9H0D6 MIDN-203ENST00000586843 416 ntTSL 224.47■■□□□ 1.516e-7■■■■□ 22
XRN2Q9H0D6 SCART1-201ENST00000462252 3451 ntTSL 216.13■□□□□ 0.174e-7■■■■□ 22
XRN2Q9H0D6 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.08■□□□□ 0.659e-9■■■■□ 22
Retrieved 100 of 21,068 protein–RNA pairs in 176.1 ms