Protein–RNA interactions for Protein: Q9H0D6

XRN2, 5'-3' exoribonuclease 2, humanhuman

Known RBP eCLIP

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRN2Q9H0D6 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.432e-130■■■■■ 717.4
XRN2Q9H0D6 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.717e-89■■■■■ 490.3
XRN2Q9H0D6 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.42■□□□□ 0.868e-11■■■■■ 464.6
XRN2Q9H0D6 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC22.2■■□□□ 1.142e-70■■■■■ 389.3
XRN2Q9H0D6 HOXD11-202ENST00000498438 1259 ntTSL 1 (best)21.82■■□□□ 1.082e-70■■■■■ 389.3
XRN2Q9H0D6 SMC4-221ENST00000489573 1553 ntTSL 1 (best)23.57■■□□□ 1.361e-147■■■■■ 345.5
XRN2Q9H0D6 SMC4-209ENST00000468653 1756 ntTSL 220.32■□□□□ 0.841e-147■■■■■ 345.5
XRN2Q9H0D6 SMC4-211ENST00000469858 1971 ntTSL 219.31■□□□□ 0.681e-147■■■■■ 345.5
XRN2Q9H0D6 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.421e-147■■■■■ 345.5
XRN2Q9H0D6 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.46■□□□□ 0.071e-147■■■■■ 345.5
XRN2Q9H0D6 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.361e-147■■■■■ 345.5
XRN2Q9H0D6 SMC4-213ENST00000472282 667 ntTSL 310.88□□□□□ -0.671e-147■■■■■ 345.5
XRN2Q9H0D6 SMC4-214ENST00000472991 582 ntTSL 510.41□□□□□ -0.741e-147■■■■■ 345.5
XRN2Q9H0D6 SMC4-210ENST00000469762 3998 ntTSL 2 BASIC9.92□□□□□ -0.821e-147■■■■■ 345.5
XRN2Q9H0D6 SMC4-212ENST00000470240 724 ntTSL 38.08□□□□□ -1.121e-147■■■■■ 345.5
XRN2Q9H0D6 SMC4-219ENST00000487747 637 ntTSL 54.49□□□□□ -1.691e-147■■■■■ 345.5
XRN2Q9H0D6 SMC4-208ENST00000467468 566 ntTSL 44.37□□□□□ -1.711e-147■■■■■ 345.5
XRN2Q9H0D6 SMC4-227ENST00000497984 563 ntTSL 54.07□□□□□ -1.761e-147■■■■■ 345.5
XRN2Q9H0D6 MIR15B-201ENST00000385045 98 ntBASIC1.53□□□□□ -2.161e-147■■■■■ 345.5
XRN2Q9H0D6 REEP4-203ENST00000518664 996 ntTSL 223.14■■□□□ 1.292e-45■■■■■ 252.3
XRN2Q9H0D6 REEP4-206ENST00000521744 635 ntTSL 320.74■□□□□ 0.912e-45■■■■■ 252.3
XRN2Q9H0D6 REEP4-204ENST00000519074 1212 ntTSL 220.71■□□□□ 0.912e-45■■■■■ 252.3
XRN2Q9H0D6 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC20.62■□□□□ 0.892e-45■■■■■ 252.3
XRN2Q9H0D6 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.812e-45■■■■■ 252.3
XRN2Q9H0D6 REEP4-205ENST00000519875 732 ntTSL 320.04■□□□□ 0.82e-45■■■■■ 252.3
XRN2Q9H0D6 REEP4-207ENST00000523293 913 ntTSL 3 BASIC19.01■□□□□ 0.632e-45■■■■■ 252.3
XRN2Q9H0D6 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.661e-13■■■■■ 246.4
XRN2Q9H0D6 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.231e-13■■■■■ 246.4
XRN2Q9H0D6 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.231e-13■■■■■ 246.4
XRN2Q9H0D6 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC5.2□□□□□ -1.583e-36■■■■■ 201.9
XRN2Q9H0D6 SNORD3B-1-201ENST00000577988 758 ntBASIC16.07■□□□□ 0.162e-12■■■■■ 172.7
XRN2Q9H0D6 SNORD3B-1-203ENST00000631292 217 nt12.62□□□□□ -0.392e-12■■■■■ 172.7
XRN2Q9H0D6 SNORD3B-1-202ENST00000617128 218 nt12.31□□□□□ -0.442e-12■■■■■ 172.7
XRN2Q9H0D6 MIR3648-1-201ENST00000615959 180 ntBASIC30.83■■■□□ 2.539e-13■■■■■ 142.1
XRN2Q9H0D6 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.183e-21■■■■■ 119
XRN2Q9H0D6 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC15.71■□□□□ 0.113e-21■■■■■ 119
XRN2Q9H0D6 PCK1-204ENST00000475833 1037 ntTSL 215.06■□□□□ 07e-20■■■■■ 111.7
XRN2Q9H0D6 CKB-205ENST00000553878 856 ntTSL 234.24■■■■□ 3.073e-19■■■■■ 108.1
XRN2Q9H0D6 CKB-206ENST00000553994 746 ntTSL 234.24■■■■□ 3.073e-19■■■■■ 108.1
XRN2Q9H0D6 CKB-208ENST00000554426 775 ntTSL 532.63■■■□□ 2.813e-19■■■■■ 108.1
XRN2Q9H0D6 CKB-214ENST00000555770 816 ntTSL 432.56■■■□□ 2.83e-19■■■■■ 108.1
XRN2Q9H0D6 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.783e-19■■■■■ 108.1
XRN2Q9H0D6 CKB-213ENST00000555659 755 ntTSL 223.45■■□□□ 1.343e-19■■■■■ 108.1
XRN2Q9H0D6 CKB-209ENST00000554705 803 ntTSL 223.45■■□□□ 1.343e-19■■■■■ 108.1
XRN2Q9H0D6 CKB-204ENST00000553652 1239 ntTSL 520.53■□□□□ 0.883e-19■■■■■ 108.1
XRN2Q9H0D6 CKB-216ENST00000557530 523 ntTSL 415.22■□□□□ 0.033e-19■■■■■ 108.1
XRN2Q9H0D6 CHTF8-209ENST00000522497 831 ntTSL 228.99■■■□□ 2.233e-16■■■■■ 104.5
XRN2Q9H0D6 CHTF8-211ENST00000567763 734 ntTSL 228.99■■■□□ 2.233e-16■■■■■ 104.5
XRN2Q9H0D6 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC27.72■■■□□ 2.033e-16■■■■■ 104.5
XRN2Q9H0D6 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC27.24■■□□□ 1.953e-16■■■■■ 104.5
XRN2Q9H0D6 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC24.75■■□□□ 1.553e-16■■■■■ 104.5
XRN2Q9H0D6 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.73e-16■■■■■ 104.5
XRN2Q9H0D6 RNU6-9-201ENST00000384776 107 ntBASIC3.04□□□□□ -1.921e-323■■■■■ 100.4
XRN2Q9H0D6 STAU2-208ENST00000520872 560 ntTSL 322.55■■□□□ 1.23e-16■■■■■ 95.5
XRN2Q9H0D6 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC21.03■□□□□ 0.963e-16■■■■■ 95.5
XRN2Q9H0D6 STAU2-204ENST00000518767 1146 ntTSL 1 (best)17.77■□□□□ 0.443e-16■■■■■ 95.5
XRN2Q9H0D6 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC16.69■□□□□ 0.263e-16■■■■■ 95.5
XRN2Q9H0D6 STAU2-203ENST00000518502 687 ntTSL 314.94□□□□□ -0.023e-16■■■■■ 95.5
XRN2Q9H0D6 STAU2-212ENST00000521419 972 ntTSL 1 (best) BASIC14.94□□□□□ -0.023e-16■■■■■ 95.5
XRN2Q9H0D6 STAU2-228ENST00000524191 808 ntTSL 314.8□□□□□ -0.043e-16■■■■■ 95.5
XRN2Q9H0D6 STAU2-202ENST00000517542 1695 ntTSL 2 BASIC13.48□□□□□ -0.253e-16■■■■■ 95.5
XRN2Q9H0D6 STAU2-214ENST00000521451 2712 ntTSL 1 (best) BASIC13.34□□□□□ -0.273e-16■■■■■ 95.5
XRN2Q9H0D6 STAU2-215ENST00000521727 3953 ntTSL 5 BASIC10.07□□□□□ -0.83e-16■■■■■ 95.5
XRN2Q9H0D6 STAU2-226ENST00000524104 2173 ntTSL 1 (best) BASIC8.21□□□□□ -1.13e-16■■■■■ 95.5
XRN2Q9H0D6 STAU2-205ENST00000518981 1746 ntTSL 27.18□□□□□ -1.263e-16■■■■■ 95.5
XRN2Q9H0D6 STAU2-206ENST00000519818 590 ntTSL 46.72□□□□□ -1.333e-16■■■■■ 95.5
XRN2Q9H0D6 STAU2-216ENST00000521736 550 ntTSL 56.6□□□□□ -1.353e-16■■■■■ 95.5
XRN2Q9H0D6 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC6.17□□□□□ -1.423e-16■■■■■ 95.5
XRN2Q9H0D6 STAU2-218ENST00000522061 564 ntTSL 46.15□□□□□ -1.423e-16■■■■■ 95.5
XRN2Q9H0D6 STAU2-213ENST00000521447 727 ntTSL 56.01□□□□□ -1.453e-16■■■■■ 95.5
XRN2Q9H0D6 STAU2-227ENST00000524113 658 ntTSL 25.82□□□□□ -1.483e-16■■■■■ 95.5
XRN2Q9H0D6 STAU2-222ENST00000522962 1041 ntTSL 35.66□□□□□ -1.53e-16■■■■■ 95.5
XRN2Q9H0D6 STAU2-223ENST00000523160 227 ntTSL 34.76□□□□□ -1.653e-16■■■■■ 95.5
XRN2Q9H0D6 STAU2-217ENST00000521845 546 ntTSL 54.43□□□□□ -1.73e-16■■■■■ 95.5
XRN2Q9H0D6 STAU2-211ENST00000521293 552 ntTSL 44.33□□□□□ -1.723e-16■■■■■ 95.5
XRN2Q9H0D6 STAU2-209ENST00000520945 472 ntTSL 43.71□□□□□ -1.823e-16■■■■■ 95.5
XRN2Q9H0D6 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.66□□□□□ -1.823e-16■■■■■ 95.5
XRN2Q9H0D6 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.31□□□□□ -1.883e-16■■■■■ 95.5
XRN2Q9H0D6 TFDP1-203ENST00000453989 792 ntTSL 328.24■■■□□ 2.111e-16■■■■■ 93.7
XRN2Q9H0D6 TFDP1-202ENST00000408980 866 ntTSL 527.85■■■□□ 2.051e-16■■■■■ 93.7
XRN2Q9H0D6 TFDP1-208ENST00000544902 1571 ntTSL 225.58■■□□□ 1.691e-16■■■■■ 93.7
XRN2Q9H0D6 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.136e-21■■■■■ 91.9
XRN2Q9H0D6 TMEM120A-202ENST00000431867 872 ntTSL 522.34■■□□□ 1.176e-21■■■■■ 91.9
XRN2Q9H0D6 TMEM120A-204ENST00000440632 1352 ntTSL 521.82■■□□□ 1.086e-21■■■■■ 91.9
XRN2Q9H0D6 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC18.84■□□□□ 0.616e-21■■■■■ 91.9
XRN2Q9H0D6 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC18.53■□□□□ 0.566e-21■■■■■ 91.9
XRN2Q9H0D6 TMEM120A-211ENST00000485200 590 ntTSL 312.19□□□□□ -0.466e-21■■■■■ 91.9
XRN2Q9H0D6 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.755e-16■■■■■ 90.1
XRN2Q9H0D6 SRM-206ENST00000490101 461 ntTSL 221.21■□□□□ 0.995e-16■■■■■ 90.1
XRN2Q9H0D6 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC19.81■□□□□ 0.765e-16■■■■■ 90.1
XRN2Q9H0D6 SRM-204ENST00000475189 545 ntTSL 218.9■□□□□ 0.625e-16■■■■■ 90.1
XRN2Q9H0D6 BID-214ENST00000617586 542 ntTSL 5 BASIC25.24■■□□□ 1.631e-6■■■■■ 88
XRN2Q9H0D6 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC25.01■■□□□ 1.591e-6■■■■■ 88
XRN2Q9H0D6 BID-208ENST00000550946 1394 ntTSL 1 (best)22.74■■□□□ 1.231e-6■■■■■ 88
XRN2Q9H0D6 BID-206ENST00000473439 638 ntTSL 222.66■■□□□ 1.221e-6■■■■■ 88
XRN2Q9H0D6 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.79■■□□□ 1.081e-6■■■■■ 88
XRN2Q9H0D6 BID-203ENST00000399765 1879 ntTSL 2 BASIC21.56■■□□□ 1.041e-6■■■■■ 88
XRN2Q9H0D6 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.961e-6■■■■■ 88
XRN2Q9H0D6 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.02■□□□□ 0.791e-6■■■■■ 88
XRN2Q9H0D6 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.581e-6■■■■■ 88
Retrieved 100 of 21,068 protein–RNA pairs in 65.5 ms