Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 COL9A2-206ENST00000466267 835 ntTSL 523.6■■□□□ 1.372e-6■■■□□ 15.6
DDX55Q8NHQ9 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.372e-18■■■□□ 15.6
DDX55Q8NHQ9 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC23.34■■□□□ 1.332e-6■■■□□ 15.6
DDX55Q8NHQ9 TMED4-202ENST00000444131 545 ntTSL 423.3■■□□□ 1.322e-6■■■□□ 15.6
DDX55Q8NHQ9 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.262e-6■■■□□ 15.6
DDX55Q8NHQ9 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.229e-8■■■□□ 15.6
DDX55Q8NHQ9 SLC39A4-203ENST00000526658 583 ntTSL 322.44■■□□□ 1.182e-6■■■□□ 15.6
DDX55Q8NHQ9 C6orf136-204ENST00000446773 1496 ntTSL 1 (best)22.41■■□□□ 1.182e-6■■■□□ 15.6
DDX55Q8NHQ9 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.172e-6■■■□□ 15.6
DDX55Q8NHQ9 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC22.01■■□□□ 1.119e-8■■■□□ 15.6
DDX55Q8NHQ9 TMED4-204ENST00000477639 1950 ntTSL 221.95■■□□□ 1.12e-6■■■□□ 15.6
DDX55Q8NHQ9 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.052e-6■■■□□ 15.6
DDX55Q8NHQ9 UNG-203ENST00000446767 2016 ntTSL 1 (best)21.33■■□□□ 1.016e-22■■■□□ 15.6
DDX55Q8NHQ9 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 16e-22■■■□□ 15.6
DDX55Q8NHQ9 FSCN1-205ENST00000473330 2215 ntTSL 221.01■□□□□ 0.952e-6■■■□□ 15.6
DDX55Q8NHQ9 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.892e-6■■■□□ 15.6
DDX55Q8NHQ9 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.44■□□□□ 0.862e-6■■■□□ 15.6
DDX55Q8NHQ9 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.842e-6■■■□□ 15.6
DDX55Q8NHQ9 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC19.75■□□□□ 0.752e-18■■■□□ 15.6
DDX55Q8NHQ9 C6orf136-212ENST00000488383 1337 ntTSL 519.63■□□□□ 0.732e-6■■■□□ 15.6
DDX55Q8NHQ9 ADD1-222ENST00000536424 594 ntTSL 519.57■□□□□ 0.722e-6■■■□□ 15.6
DDX55Q8NHQ9 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.727e-15■■■□□ 15.6
DDX55Q8NHQ9 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.711e-6■■■□□ 15.6
DDX55Q8NHQ9 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.72e-6■■■□□ 15.6
DDX55Q8NHQ9 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.682e-6■■■□□ 15.6
DDX55Q8NHQ9 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC19.22■□□□□ 0.672e-6■■■□□ 15.6
DDX55Q8NHQ9 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC19.07■□□□□ 0.642e-6■■■□□ 15.6
DDX55Q8NHQ9 UNG-204ENST00000539287 2234 ntTSL 518.64■□□□□ 0.576e-22■■■□□ 15.6
DDX55Q8NHQ9 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC18.46■□□□□ 0.552e-18■■■□□ 15.6
DDX55Q8NHQ9 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.542e-6■■■□□ 15.6
DDX55Q8NHQ9 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.526e-22■■■□□ 15.6
DDX55Q8NHQ9 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.482e-6■■■□□ 15.6
DDX55Q8NHQ9 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC17.79■□□□□ 0.442e-6■■■□□ 15.6
DDX55Q8NHQ9 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.412e-6■■■□□ 15.6
DDX55Q8NHQ9 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.42e-6■■■□□ 15.6
DDX55Q8NHQ9 DBN1-206ENST00000472831 2667 ntTSL 217.52■□□□□ 0.392e-6■■■□□ 15.6
DDX55Q8NHQ9 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.362e-6■■■□□ 15.6
DDX55Q8NHQ9 ABCD4-218ENST00000553486 1842 ntTSL 1 (best)17.19■□□□□ 0.342e-6■■■□□ 15.6
DDX55Q8NHQ9 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.342e-6■■■□□ 15.6
DDX55Q8NHQ9 ABCD4-224ENST00000556119 838 ntTSL 517.17■□□□□ 0.342e-6■■■□□ 15.6
DDX55Q8NHQ9 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC16.91■□□□□ 0.32e-6■■■□□ 15.6
DDX55Q8NHQ9 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.32e-6■■■□□ 15.6
DDX55Q8NHQ9 EI24-205ENST00000527520 452 ntTSL 316.85■□□□□ 0.292e-6■■■□□ 15.6
DDX55Q8NHQ9 ABCD4-217ENST00000496015 1248 ntTSL 516.83■□□□□ 0.282e-6■■■□□ 15.6
DDX55Q8NHQ9 C6orf136-208ENST00000467801 583 ntTSL 216.79■□□□□ 0.282e-6■■■□□ 15.6
DDX55Q8NHQ9 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.262e-6■■■□□ 15.6
DDX55Q8NHQ9 LSM6-204ENST00000504181 549 ntTSL 216.31■□□□□ 0.22e-6■■■□□ 15.6
DDX55Q8NHQ9 ABCD4-219ENST00000553745 1770 ntTSL 216.24■□□□□ 0.192e-6■■■□□ 15.6
DDX55Q8NHQ9 ABCD4-226ENST00000556971 637 ntTSL 316.21■□□□□ 0.192e-6■■■□□ 15.6
DDX55Q8NHQ9 ABCD4-205ENST00000469672 966 ntTSL 1 (best)16.02■□□□□ 0.162e-6■■■□□ 15.6
DDX55Q8NHQ9 UBB-207ENST00000578649 477 ntTSL 515.98■□□□□ 0.157e-15■■■□□ 15.6
DDX55Q8NHQ9 AC005519.2-201ENST00000554532 1367 ntTSL 4 BASIC15.6■□□□□ 0.092e-6■■■□□ 15.6
DDX55Q8NHQ9 ABCD4-222ENST00000555617 542 ntTSL 415.31■□□□□ 0.042e-6■■■□□ 15.6
DDX55Q8NHQ9 C6orf136-207ENST00000465699 692 ntTSL 315.27■□□□□ 0.042e-6■■■□□ 15.6
DDX55Q8NHQ9 EI24-203ENST00000527131 534 ntTSL 415.17■□□□□ 0.022e-6■■■□□ 15.6
DDX55Q8NHQ9 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -02e-6■■■□□ 15.6
DDX55Q8NHQ9 NOP16-210ENST00000619979 963 ntTSL 5 BASIC14.76□□□□□ -0.052e-6■■■□□ 15.6
DDX55Q8NHQ9 FAM49B-220ENST00000522250 1647 ntTSL 5 BASIC14.52□□□□□ -0.092e-6■■■□□ 15.6
DDX55Q8NHQ9 ABCD4-211ENST00000481935 2336 ntTSL 514.41□□□□□ -0.12e-6■■■□□ 15.6
DDX55Q8NHQ9 NOP16-207ENST00000614830 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.142e-6■■■□□ 15.6
DDX55Q8NHQ9 ABCD4-221ENST00000554453 736 ntTSL 513.78□□□□□ -0.22e-6■■■□□ 15.6
DDX55Q8NHQ9 NOP16-202ENST00000502663 551 ntTSL 313.75□□□□□ -0.212e-6■■■□□ 15.6
DDX55Q8NHQ9 TSPYL2-201ENST00000375442 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.242e-6■■■□□ 15.6
DDX55Q8NHQ9 FAM49B-215ENST00000519824 3798 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.312e-6■■■□□ 15.6
DDX55Q8NHQ9 ABCD4-227ENST00000557554 523 ntTSL 413.04□□□□□ -0.322e-6■■■□□ 15.6
DDX55Q8NHQ9 NOP16-208ENST00000616685 472 ntTSL 3 BASIC12.9□□□□□ -0.342e-6■■■□□ 15.6
DDX55Q8NHQ9 C6orf136-205ENST00000460172 253 ntTSL 212.81□□□□□ -0.362e-6■■■□□ 15.6
DDX55Q8NHQ9 C6orf136-209ENST00000468785 492 ntTSL 212.62□□□□□ -0.392e-6■■■□□ 15.6
DDX55Q8NHQ9 TNRC18-209ENST00000464852 418 ntTSL 312.56□□□□□ -0.42e-6■■■□□ 15.6
DDX55Q8NHQ9 ABCD4-201ENST00000356924 3003 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.42e-6■■■□□ 15.6
DDX55Q8NHQ9 UBB-202ENST00000395837 1014 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.447e-15■■■□□ 15.6
DDX55Q8NHQ9 NFRKB-201ENST00000446488 5093 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.52e-6■■■□□ 15.6
DDX55Q8NHQ9 UBB-204ENST00000535788 704 ntTSL 2 BASIC11.21□□□□□ -0.617e-15■■■□□ 15.6
DDX55Q8NHQ9 UBB-209ENST00000614404 1056 ntAPPRIS P1 TSL 3 BASIC10.82□□□□□ -0.687e-15■■■□□ 15.6
DDX55Q8NHQ9 TSPYL2-204ENST00000556808 4178 ntTSL 210.62□□□□□ -0.712e-6■■■□□ 15.6
DDX55Q8NHQ9 ABCD4-220ENST00000553998 478 ntTSL 39.82□□□□□ -0.842e-6■■■□□ 15.6
DDX55Q8NHQ9 TRRAP-205ENST00000456197 11654 ntAPPRIS ALT2 TSL 1 (best)8.85□□□□□ -0.992e-6■■■□□ 15.6
DDX55Q8NHQ9 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC8.38□□□□□ -1.072e-6■■■□□ 15.6
DDX55Q8NHQ9 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC8.36□□□□□ -1.072e-6■■■□□ 15.6
DDX55Q8NHQ9 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC8.25□□□□□ -1.092e-6■■■□□ 15.6
DDX55Q8NHQ9 FAM49B-226ENST00000523509 1968 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.172e-6■■■□□ 15.6
DDX55Q8NHQ9 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.232e-6■■■□□ 15.6
DDX55Q8NHQ9 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC7.07□□□□□ -1.282e-6■■■□□ 15.6
DDX55Q8NHQ9 RAD23B-205ENST00000457811 811 ntTSL 36.89□□□□□ -1.312e-6■■■□□ 15.6
DDX55Q8NHQ9 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC6.64□□□□□ -1.352e-6■■■□□ 15.6
DDX55Q8NHQ9 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.62e-6■■■□□ 15.6
DDX55Q8NHQ9 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC4.34□□□□□ -1.712e-6■■■□□ 15.6
DDX55Q8NHQ9 FAM49B-225ENST00000523288 4552 ntTSL 24.15□□□□□ -1.752e-6■■■□□ 15.6
DDX55Q8NHQ9 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC28.06■■■□□ 2.082e-7■■■□□ 15.6
DDX55Q8NHQ9 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC17.49■□□□□ 0.391e-26■■■□□ 15.6
DDX55Q8NHQ9 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.822e-6■■■□□ 15.6
DDX55Q8NHQ9 LYPLA2-203ENST00000374503 868 ntTSL 2 BASIC15.98■□□□□ 0.152e-6■■■□□ 15.6
DDX55Q8NHQ9 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC26.26■■□□□ 1.794e-7■■■□□ 15.5
DDX55Q8NHQ9 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC22.71■■□□□ 1.234e-7■■■□□ 15.5
DDX55Q8NHQ9 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.894e-7■■■□□ 15.5
DDX55Q8NHQ9 GPR35-205ENST00000438013 3821 ntAPPRIS P3 BASIC14.28□□□□□ -0.124e-7■■■□□ 15.5
DDX55Q8NHQ9 C6orf62-202ENST00000378119 4134 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.081e-6■■■□□ 15.5
DDX55Q8NHQ9 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC24.4■■□□□ 1.53e-7■■■□□ 15.5
DDX55Q8NHQ9 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.218e-8■■■□□ 15.5
DDX55Q8NHQ9 TMEM129-204ENST00000476253 958 ntTSL 222.35■■□□□ 1.178e-8■■■□□ 15.5
Retrieved 100 of 15,504 protein–RNA pairs in 134 ms