RNA–Protein interactions for RNA: ENST00000554453.5

ABCD4-221, Transcript of ATP binding cassette subfamily D member 4, humanhuman

TSL 5

Gene ABCD4, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD4-221ENST00000554453 NISCHQ9Y2I1 1504 aa27.48■■□□□ 1.99
ABCD4-221ENST00000554453 CCDC180Q9P1Z9 1646 aa24.5■■□□□ 1.51
ABCD4-221ENST00000554453 ABCC9O60706 1549 aa24.4■■□□□ 1.5
ABCD4-221ENST00000554453 RB1CC1Q8TDY2 1594 aa23.28■■□□□ 1.32
ABCD4-221ENST00000554453 DCAF8L2P0C7V8 631 aa23.24■■□□□ 1.31
ABCD4-221ENST00000554453 NACADO15069 1562 aa23.19■■□□□ 1.3
ABCD4-221ENST00000554453 MYO15BQ96JP2 1530 aa22.97■■□□□ 1.27
ABCD4-221ENST00000554453 DNAJC5BQ9UF47 199 aa22.87■■□□□ 1.25
ABCD4-221ENST00000554453 PABPN1Q86U42 306 aaKnown RBP eCLIP22.83■■□□□ 1.25
ABCD4-221ENST00000554453 ZCCHC6Q5VYS8 1495 aaKnown RBP22.77■■□□□ 1.24
ABCD4-221ENST00000554453 DCAF1Q9Y4B6 1507 aa22.72■■□□□ 1.23
ABCD4-221ENST00000554453 UNC13AQ9UPW8 1703 aa22.7■■□□□ 1.22
ABCD4-221ENST00000554453 BICRAQ9NZM4 1560 aa22.6■■□□□ 1.21
ABCD4-221ENST00000554453 SHROOM4Q9ULL8 1493 aa22.32■■□□□ 1.16
ABCD4-221ENST00000554453 SCRIBQ14160 1630 aa22.31■■□□□ 1.16
ABCD4-221ENST00000554453 CC2D2AQ9P2K1 1620 aa22.02■■□□□ 1.12
ABCD4-221ENST00000554453 EIF4G1Q04637 1599 aaKnown RBP22.02■■□□□ 1.12
ABCD4-221ENST00000554453 CECR2Q9BXF3 1484 aa21.97■■□□□ 1.11
ABCD4-221ENST00000554453 NCAPD3P42695 1498 aa21.47■■□□□ 1.03
ABCD4-221ENST00000554453 ATAD2BQ9ULI0 1458 aa21.39■■□□□ 1.02
ABCD4-221ENST00000554453 SMARCA4P51532 1647 aa21.34■■□□□ 1.01
ABCD4-221ENST00000554453 SMARCA2P51531 1590 aa21.31■■□□□ 1
ABCD4-221ENST00000554453 BAZ1AQ9NRL2 1556 aaPredicted RBP21.29■■□□□ 1
ABCD4-221ENST00000554453 HMGXB3Q12766 1538 aa21.23■□□□□ 0.99
ABCD4-221ENST00000554453 MROH2BQ7Z745 1585 aa21.17■□□□□ 0.98
ABCD4-221ENST00000554453 PEG3Q9GZU2 1588 aa21.16■□□□□ 0.98
ABCD4-221ENST00000554453 BAZ1BQ9UIG0 1483 aaKnown RBP21.15■□□□□ 0.98
ABCD4-221ENST00000554453 ERCC6Q03468 1493 aa21.04■□□□□ 0.96
ABCD4-221ENST00000554453 NESP48681 1621 aa21.01■□□□□ 0.95
ABCD4-221ENST00000554453 CUX2O14529 1486 aa20.97■□□□□ 0.95
ABCD4-221ENST00000554453 DNAJC5Q9H3Z4 198 aa20.9■□□□□ 0.94
ABCD4-221ENST00000554453 WIZO95785 1651 aa20.88■□□□□ 0.93
ABCD4-221ENST00000554453 LAMC3Q9Y6N6 1575 aa20.88■□□□□ 0.93
ABCD4-221ENST00000554453 CADPSQ9ULU8 1353 aa20.85■□□□□ 0.93
ABCD4-221ENST00000554453 RSF1Q96T23 1441 aaPredicted RBP20.84■□□□□ 0.93
ABCD4-221ENST00000554453 PDS5BQ9NTI5 1447 aa20.82■□□□□ 0.92
ABCD4-221ENST00000554453 THOC2Q8NI27 1593 aaKnown RBP20.68■□□□□ 0.9
ABCD4-221ENST00000554453 KIF21AQ7Z4S6 1674 aa20.67■□□□□ 0.9
ABCD4-221ENST00000554453 TOP2AP11388 1531 aaKnown RBP20.63■□□□□ 0.89
ABCD4-221ENST00000554453 CFTRP13569 1480 aa20.6■□□□□ 0.89
ABCD4-221ENST00000554453 MRC2Q9UBG0 1479 aa20.56■□□□□ 0.88
ABCD4-221ENST00000554453 FANCD2Q9BXW9 1451 aa20.53■□□□□ 0.88
ABCD4-221ENST00000554453 CEP164Q9UPV0 1460 aa20.51■□□□□ 0.87
ABCD4-221ENST00000554453 WDR62O43379 1518 aa20.48■□□□□ 0.87
ABCD4-221ENST00000554453 CCDC88BA6NC98 1476 aa20.47■□□□□ 0.87
ABCD4-221ENST00000554453 URB2Q14146 1524 aaKnown RBP20.34■□□□□ 0.85
ABCD4-221ENST00000554453 PRDM2Q13029 1718 aa20.27■□□□□ 0.83
ABCD4-221ENST00000554453 ABCC8Q09428 1581 aa20.18■□□□□ 0.82
ABCD4-221ENST00000554453 OSCARQ8IYS5 282 aa20.18■□□□□ 0.82
ABCD4-221ENST00000554453 TOPBP1Q92547 1522 aa20.16■□□□□ 0.82
ABCD4-221ENST00000554453 IFT140Q96RY7 1462 aa20.13■□□□□ 0.81
ABCD4-221ENST00000554453 SUPT5HO00267 1087 aaKnown RBP20.09■□□□□ 0.81
ABCD4-221ENST00000554453 ZNF608Q9ULD9 1512 aaPredicted RBP20.07■□□□□ 0.8
ABCD4-221ENST00000554453 DNMBPQ6XZF7 1577 aa20.07■□□□□ 0.8
ABCD4-221ENST00000554453 TRIM41Q8WV44 630 aa19.97■□□□□ 0.79
ABCD4-221ENST00000554453 POLA1P09884 1462 aaPredicted RBP19.96■□□□□ 0.79
ABCD4-221ENST00000554453 AQRO60306 1485 aaKnown RBP eCLIP19.95■□□□□ 0.787e-8■■■■■ 35.6
ABCD4-221ENST00000554453 SOGA1O94964 1423 aa19.94■□□□□ 0.78
ABCD4-221ENST00000554453 TARBP1Q13395 1621 aaKnown RBP19.94■□□□□ 0.78
ABCD4-221ENST00000554453 RAD54L2Q9Y4B4 1467 aa19.91■□□□□ 0.78
ABCD4-221ENST00000554453 TDRD9Q8NDG6 1382 aaKnown RBP19.88■□□□□ 0.77
ABCD4-221ENST00000554453 EIF4G3O43432 1585 aaKnown RBP19.87■□□□□ 0.77
ABCD4-221ENST00000554453 CUX1P39880 1505 aa19.86■□□□□ 0.77
ABCD4-221ENST00000554453 FGD5Q6ZNL6 1462 aa19.85■□□□□ 0.77
ABCD4-221ENST00000554453 FBLN2P98095 1184 aa19.83■□□□□ 0.77
ABCD4-221ENST00000554453 WDR97A6NE52 1622 aa19.74■□□□□ 0.75
ABCD4-221ENST00000554453 CHMP7Q8WUX9 453 aaPredicted RBP19.73■□□□□ 0.75
ABCD4-221ENST00000554453 RIMBP3CA6NJZ7 1639 aa19.71■□□□□ 0.75
ABCD4-221ENST00000554453 RIMBP3BA6NNM3 1639 aa19.71■□□□□ 0.75
ABCD4-221ENST00000554453 RIMBP3Q9UFD9 1639 aa19.71■□□□□ 0.75
ABCD4-221ENST00000554453 GRIN2BQ13224 1484 aa19.71■□□□□ 0.75
ABCD4-221ENST00000554453 CHD1O14646 1710 aa19.71■□□□□ 0.75
ABCD4-221ENST00000554453 ARHGEF11O15085 1522 aa19.69■□□□□ 0.74
ABCD4-221ENST00000554453 SNAPC4Q5SXM2 1469 aa19.68■□□□□ 0.74
ABCD4-221ENST00000554453 MAGI1Q96QZ7 1491 aaPredicted RBP19.67■□□□□ 0.74
ABCD4-221ENST00000554453 CYB5RLQ6IPT4 315 aa19.67■□□□□ 0.74
ABCD4-221ENST00000554453 GAPVD1Q14C86 1478 aa19.67■□□□□ 0.74
ABCD4-221ENST00000554453 ABCA10Q8WWZ4 1543 aa19.66■□□□□ 0.74
ABCD4-221ENST00000554453 WRNQ14191 1432 aaPredicted RBP eCLIP19.65■□□□□ 0.74
ABCD4-221ENST00000554453 SYNJ2O15056 1496 aa19.6■□□□□ 0.73
ABCD4-221ENST00000554453 TOP2BQ02880 1626 aa19.58■□□□□ 0.72
ABCD4-221ENST00000554453 BIVM-ERCC5R4GMW8 1640 aa19.54■□□□□ 0.72
ABCD4-221ENST00000554453 ABCA5Q8WWZ7 1642 aa19.54■□□□□ 0.72
ABCD4-221ENST00000554453 SYNJ1O43426 1573 aa19.53■□□□□ 0.72
ABCD4-221ENST00000554453 CLASP1Q7Z460 1538 aa19.52■□□□□ 0.72
ABCD4-221ENST00000554453 ARAP1Q96P48 1450 aa19.52■□□□□ 0.72
ABCD4-221ENST00000554453 PBRM1Q86U86 1689 aa19.52■□□□□ 0.71
ABCD4-221ENST00000554453 FHAD1B1AJZ9 1412 aa19.43■□□□□ 0.7
ABCD4-221ENST00000554453 GRIN2AQ12879 1464 aa19.41■□□□□ 0.7
ABCD4-221ENST00000554453 ERICH3Q5RHP9 1530 aa19.41■□□□□ 0.7
ABCD4-221ENST00000554453 NUP160Q12769 1436 aa19.38■□□□□ 0.69
ABCD4-221ENST00000554453 ADAMTS12P58397 1594 aa19.36■□□□□ 0.69
ABCD4-221ENST00000554453 TRHP20396 242 aaPredicted RBP19.36■□□□□ 0.69
ABCD4-221ENST00000554453 CEP170Q5SW79 1584 aa19.31■□□□□ 0.68
ABCD4-221ENST00000554453 IGF1RP08069 1367 aa19.31■□□□□ 0.68
ABCD4-221ENST00000554453 JPH4Q96JJ6 628 aa19.3■□□□□ 0.68
ABCD4-221ENST00000554453 KIF27Q86VH2 1401 aa19.26■□□□□ 0.67
ABCD4-221ENST00000554453 ERCC6L2Q5T890 1561 aa19.23■□□□□ 0.67
ABCD4-221ENST00000554453 SHROOM2Q13796 1616 aa19.22■□□□□ 0.67
ABCD4-221ENST00000554453 PRG4Q92954 1404 aaPredicted RBP19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms