RNA–Protein interactions for RNA: ENST00000557588.5

ABCD4-228, Transcript of ATP binding cassette subfamily D member 4, humanhuman

TSL 3 BASIC

Gene ABCD4, Length 763 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD4-228ENST00000557588 NISCHQ9Y2I1 1504 aa46.99■■■■■ 5.11
ABCD4-228ENST00000557588 ABCC9O60706 1549 aa42.76■■■■■ 4.44
ABCD4-228ENST00000557588 CCDC180Q9P1Z9 1646 aa42.47■■■■■ 4.39
ABCD4-228ENST00000557588 RB1CC1Q8TDY2 1594 aa40.58■■■■■ 4.09
ABCD4-228ENST00000557588 DNAJC5BQ9UF47 199 aa40.45■■■■■ 4.07
ABCD4-228ENST00000557588 NACADO15069 1562 aa40.2■■■■■ 4.03
ABCD4-228ENST00000557588 UNC13AQ9UPW8 1703 aa39.69■■■■□ 3.94
ABCD4-228ENST00000557588 PABPN1Q86U42 306 aaKnown RBP eCLIP39.63■■■■□ 3.93
ABCD4-228ENST00000557588 DCAF8L2P0C7V8 631 aa39.57■■■■□ 3.93
ABCD4-228ENST00000557588 MYO15BQ96JP2 1530 aa39.55■■■■□ 3.92
ABCD4-228ENST00000557588 BICRAQ9NZM4 1560 aa39.43■■■■□ 3.9
ABCD4-228ENST00000557588 SHROOM4Q9ULL8 1493 aa38.94■■■■□ 3.82
ABCD4-228ENST00000557588 ZCCHC6Q5VYS8 1495 aaKnown RBP38.89■■■■□ 3.82
ABCD4-228ENST00000557588 DCAF1Q9Y4B6 1507 aa38.86■■■■□ 3.81
ABCD4-228ENST00000557588 CC2D2AQ9P2K1 1620 aa38.67■■■■□ 3.78
ABCD4-228ENST00000557588 CECR2Q9BXF3 1484 aa38.6■■■■□ 3.77
ABCD4-228ENST00000557588 SCRIBQ14160 1630 aa38.56■■■■□ 3.76
ABCD4-228ENST00000557588 EIF4G1Q04637 1599 aaKnown RBP38.49■■■■□ 3.75
ABCD4-228ENST00000557588 DNAJC5Q9H3Z4 198 aa37.51■■■■□ 3.6
ABCD4-228ENST00000557588 CUX2O14529 1486 aa37.13■■■■□ 3.54
ABCD4-228ENST00000557588 NCAPD3P42695 1498 aa37.08■■■■□ 3.53
ABCD4-228ENST00000557588 ERCC6Q03468 1493 aa36.95■■■■□ 3.51
ABCD4-228ENST00000557588 ATAD2BQ9ULI0 1458 aa36.89■■■■□ 3.5
ABCD4-228ENST00000557588 HMGXB3Q12766 1538 aa36.84■■■■□ 3.49
ABCD4-228ENST00000557588 SMARCA2P51531 1590 aa36.8■■■■□ 3.48
ABCD4-228ENST00000557588 SMARCA4P51532 1647 aa36.78■■■■□ 3.48
ABCD4-228ENST00000557588 NESP48681 1621 aa36.6■■■■□ 3.45
ABCD4-228ENST00000557588 BAZ1AQ9NRL2 1556 aaPredicted RBP36.53■■■■□ 3.44
ABCD4-228ENST00000557588 BAZ1BQ9UIG0 1483 aaKnown RBP36.5■■■■□ 3.43
ABCD4-228ENST00000557588 PEG3Q9GZU2 1588 aa36.49■■■■□ 3.43
ABCD4-228ENST00000557588 THOC2Q8NI27 1593 aaKnown RBP36.44■■■■□ 3.42
ABCD4-228ENST00000557588 LAMC3Q9Y6N6 1575 aa36.36■■■■□ 3.41
ABCD4-228ENST00000557588 KIF21AQ7Z4S6 1674 aa36.19■■■■□ 3.38
ABCD4-228ENST00000557588 MROH2BQ7Z745 1585 aa36.17■■■■□ 3.38
ABCD4-228ENST00000557588 PDS5BQ9NTI5 1447 aa36.09■■■■□ 3.37
ABCD4-228ENST00000557588 CADPSQ9ULU8 1353 aa35.89■■■■□ 3.34
ABCD4-228ENST00000557588 MRC2Q9UBG0 1479 aa35.86■■■■□ 3.33
ABCD4-228ENST00000557588 WDR62O43379 1518 aa35.83■■■■□ 3.33
ABCD4-228ENST00000557588 WIZO95785 1651 aa35.72■■■■□ 3.31
ABCD4-228ENST00000557588 CEP164Q9UPV0 1460 aa35.61■■■■□ 3.29
ABCD4-228ENST00000557588 TRIM41Q8WV44 630 aa35.59■■■■□ 3.29
ABCD4-228ENST00000557588 FANCD2Q9BXW9 1451 aa35.51■■■■□ 3.28
ABCD4-228ENST00000557588 CFTRP13569 1480 aa35.43■■■■□ 3.26
ABCD4-228ENST00000557588 TOP2AP11388 1531 aaKnown RBP35.29■■■■□ 3.24
ABCD4-228ENST00000557588 URB2Q14146 1524 aaKnown RBP35.27■■■■□ 3.24
ABCD4-228ENST00000557588 RSF1Q96T23 1441 aaPredicted RBP35.23■■■■□ 3.23
ABCD4-228ENST00000557588 OSCARQ8IYS5 282 aa35.2■■■■□ 3.23
ABCD4-228ENST00000557588 PRDM2Q13029 1718 aa35.13■■■■□ 3.21
ABCD4-228ENST00000557588 RIMBP3CA6NJZ7 1639 aa34.93■■■■□ 3.18
ABCD4-228ENST00000557588 RIMBP3BA6NNM3 1639 aa34.93■■■■□ 3.18
ABCD4-228ENST00000557588 RIMBP3Q9UFD9 1639 aa34.93■■■■□ 3.18
ABCD4-228ENST00000557588 IFT140Q96RY7 1462 aa34.91■■■■□ 3.18
ABCD4-228ENST00000557588 ZNF608Q9ULD9 1512 aaPredicted RBP34.88■■■■□ 3.17
ABCD4-228ENST00000557588 CCDC88BA6NC98 1476 aa34.81■■■■□ 3.16
ABCD4-228ENST00000557588 TOPBP1Q92547 1522 aa34.8■■■■□ 3.16
ABCD4-228ENST00000557588 ARHGEF11O15085 1522 aa34.77■■■■□ 3.16
ABCD4-228ENST00000557588 EIF4G3O43432 1585 aaKnown RBP34.74■■■■□ 3.15
ABCD4-228ENST00000557588 ABCC8Q09428 1581 aa34.7■■■■□ 3.14
ABCD4-228ENST00000557588 DNMBPQ6XZF7 1577 aa34.66■■■■□ 3.14
ABCD4-228ENST00000557588 TARBP1Q13395 1621 aaKnown RBP34.57■■■■□ 3.12
ABCD4-228ENST00000557588 CHD1O14646 1710 aa34.55■■■■□ 3.12
ABCD4-228ENST00000557588 AQRO60306 1485 aaKnown RBP eCLIP34.46■■■■□ 3.117e-8■■■■■ 35.6
ABCD4-228ENST00000557588 POLA1P09884 1462 aaPredicted RBP34.42■■■■□ 3.1
ABCD4-228ENST00000557588 ARAP1Q96P48 1450 aa34.39■■■■□ 3.1
ABCD4-228ENST00000557588 CYB5RLQ6IPT4 315 aa34.37■■■■□ 3.09
ABCD4-228ENST00000557588 WDR97A6NE52 1622 aa34.25■■■■□ 3.07
ABCD4-228ENST00000557588 RAD54L2Q9Y4B4 1467 aa34.24■■■■□ 3.07
ABCD4-228ENST00000557588 FBLN2P98095 1184 aa34.21■■■■□ 3.07
ABCD4-228ENST00000557588 SOGA1O94964 1423 aa34.18■■■■□ 3.06
ABCD4-228ENST00000557588 CLASP1Q7Z460 1538 aa34.17■■■■□ 3.06
ABCD4-228ENST00000557588 SNAPC4Q5SXM2 1469 aa34.15■■■■□ 3.06
ABCD4-228ENST00000557588 TDRD9Q8NDG6 1382 aaKnown RBP34.14■■■■□ 3.06
ABCD4-228ENST00000557588 FGD5Q6ZNL6 1462 aa34.12■■■■□ 3.05
ABCD4-228ENST00000557588 TRHP20396 242 aaPredicted RBP34.11■■■■□ 3.05
ABCD4-228ENST00000557588 MAGI1Q96QZ7 1491 aaPredicted RBP34.08■■■■□ 3.05
ABCD4-228ENST00000557588 SYNJ1O43426 1573 aa34.07■■■■□ 3.05
ABCD4-228ENST00000557588 CUX1P39880 1505 aa34.03■■■■□ 3.04
ABCD4-228ENST00000557588 GRIN2BQ13224 1484 aa34■■■■□ 3.03
ABCD4-228ENST00000557588 SYNJ2O15056 1496 aa33.95■■■■□ 3.03
ABCD4-228ENST00000557588 CHMP7Q8WUX9 453 aaPredicted RBP33.93■■■■□ 3.02
ABCD4-228ENST00000557588 PBRM1Q86U86 1689 aa33.89■■■■□ 3.02
ABCD4-228ENST00000557588 GAPVD1Q14C86 1478 aa33.79■■■■□ 3
ABCD4-228ENST00000557588 ABCA5Q8WWZ7 1642 aa33.79■■■■□ 3
ABCD4-228ENST00000557588 ABCA10Q8WWZ4 1543 aa33.74■■■□□ 2.99
ABCD4-228ENST00000557588 GRIN2AQ12879 1464 aa33.57■■■□□ 2.97
ABCD4-228ENST00000557588 ADAMTS12P58397 1594 aa33.55■■■□□ 2.96
ABCD4-228ENST00000557588 ERCC6L2Q5T890 1561 aa33.54■■■□□ 2.96
ABCD4-228ENST00000557588 NUP160Q12769 1436 aa33.5■■■□□ 2.95
ABCD4-228ENST00000557588 CEP170Q5SW79 1584 aa33.5■■■□□ 2.95
ABCD4-228ENST00000557588 AEBP2Q6ZN18 517 aaPredicted RBP33.46■■■□□ 2.95
ABCD4-228ENST00000557588 SHROOM2Q13796 1616 aa33.46■■■□□ 2.95
ABCD4-228ENST00000557588 WRNQ14191 1432 aaPredicted RBP eCLIP33.45■■■□□ 2.95
ABCD4-228ENST00000557588 BIVM-ERCC5R4GMW8 1640 aa33.42■■■□□ 2.94
ABCD4-228ENST00000557588 TOP2BQ02880 1626 aa33.39■■■□□ 2.93
ABCD4-228ENST00000557588 FHAD1B1AJZ9 1412 aa33.36■■■□□ 2.93
ABCD4-228ENST00000557588 ERICH3Q5RHP9 1530 aa33.32■■■□□ 2.92
ABCD4-228ENST00000557588 KIF13AQ9H1H9 1805 aa33.23■■■□□ 2.91
ABCD4-228ENST00000557588 SUPT5HO00267 1087 aaKnown RBP33.14■■■□□ 2.9
ABCD4-228ENST00000557588 PRG4Q92954 1404 aaPredicted RBP33.13■■■□□ 2.89
ABCD4-228ENST00000557588 RUSC2Q8N2Y8 1516 aa33.11■■■□□ 2.89
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms