RNA–Protein interactions for RNA: ENST00000553998.5

ABCD4-220, Transcript of ATP binding cassette subfamily D member 4, humanhuman

TSL 3

Gene ABCD4, Length 478 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD4-220ENST00000553998 NISCHQ9Y2I1 1504 aa19.66■□□□□ 0.74
ABCD4-220ENST00000553998 ABCC9O60706 1549 aa18■□□□□ 0.47
ABCD4-220ENST00000553998 CCDC180Q9P1Z9 1646 aa17.69■□□□□ 0.42
ABCD4-220ENST00000553998 DNAJC5BQ9UF47 199 aa17.26■□□□□ 0.35
ABCD4-220ENST00000553998 RB1CC1Q8TDY2 1594 aa17.01■□□□□ 0.31
ABCD4-220ENST00000553998 NACADO15069 1562 aa16.86■□□□□ 0.29
ABCD4-220ENST00000553998 PABPN1Q86U42 306 aaKnown RBP eCLIP16.75■□□□□ 0.27
ABCD4-220ENST00000553998 DCAF8L2P0C7V8 631 aa16.66■□□□□ 0.26
ABCD4-220ENST00000553998 MYO15BQ96JP2 1530 aa16.62■□□□□ 0.25
ABCD4-220ENST00000553998 BICRAQ9NZM4 1560 aa16.55■□□□□ 0.24
ABCD4-220ENST00000553998 UNC13AQ9UPW8 1703 aa16.48■□□□□ 0.23
ABCD4-220ENST00000553998 SHROOM4Q9ULL8 1493 aa16.36■□□□□ 0.21
ABCD4-220ENST00000553998 CECR2Q9BXF3 1484 aa16.28■□□□□ 0.2
ABCD4-220ENST00000553998 DCAF1Q9Y4B6 1507 aa16.27■□□□□ 0.2
ABCD4-220ENST00000553998 CC2D2AQ9P2K1 1620 aa16.23■□□□□ 0.19
ABCD4-220ENST00000553998 ZCCHC6Q5VYS8 1495 aaKnown RBP16.22■□□□□ 0.19
ABCD4-220ENST00000553998 EIF4G1Q04637 1599 aaKnown RBP16.15■□□□□ 0.18
ABCD4-220ENST00000553998 DNAJC5Q9H3Z4 198 aa16.09■□□□□ 0.17
ABCD4-220ENST00000553998 SCRIBQ14160 1630 aa16.05■□□□□ 0.16
ABCD4-220ENST00000553998 CUX2O14529 1486 aa15.7■□□□□ 0.1
ABCD4-220ENST00000553998 NCAPD3P42695 1498 aa15.65■□□□□ 0.1
ABCD4-220ENST00000553998 ERCC6Q03468 1493 aa15.54■□□□□ 0.08
ABCD4-220ENST00000553998 ATAD2BQ9ULI0 1458 aa15.51■□□□□ 0.07
ABCD4-220ENST00000553998 HMGXB3Q12766 1538 aa15.43■□□□□ 0.06
ABCD4-220ENST00000553998 SMARCA2P51531 1590 aa15.41■□□□□ 0.06
ABCD4-220ENST00000553998 NESP48681 1621 aa15.38■□□□□ 0.05
ABCD4-220ENST00000553998 SMARCA4P51532 1647 aa15.33■□□□□ 0.04
ABCD4-220ENST00000553998 BAZ1BQ9UIG0 1483 aaKnown RBP15.28■□□□□ 0.04
ABCD4-220ENST00000553998 PEG3Q9GZU2 1588 aa15.27■□□□□ 0.03
ABCD4-220ENST00000553998 THOC2Q8NI27 1593 aaKnown RBP15.26■□□□□ 0.03
ABCD4-220ENST00000553998 BAZ1AQ9NRL2 1556 aaPredicted RBP15.25■□□□□ 0.03
ABCD4-220ENST00000553998 LAMC3Q9Y6N6 1575 aa15.24■□□□□ 0.03
ABCD4-220ENST00000553998 PDS5BQ9NTI5 1447 aa15.22■□□□□ 0.03
ABCD4-220ENST00000553998 CADPSQ9ULU8 1353 aa15.13■□□□□ 0.01
ABCD4-220ENST00000553998 TRIM41Q8WV44 630 aa15.13■□□□□ 0.01
ABCD4-220ENST00000553998 MROH2BQ7Z745 1585 aa15.11■□□□□ 0.01
ABCD4-220ENST00000553998 KIF21AQ7Z4S6 1674 aa15.07■□□□□ 0
ABCD4-220ENST00000553998 MRC2Q9UBG0 1479 aa15.06■□□□□ 0
ABCD4-220ENST00000553998 WDR62O43379 1518 aa15.03■□□□□ -0
ABCD4-220ENST00000553998 OSCARQ8IYS5 282 aa14.96□□□□□ -0.01
ABCD4-220ENST00000553998 CEP164Q9UPV0 1460 aa14.92□□□□□ -0.02
ABCD4-220ENST00000553998 FANCD2Q9BXW9 1451 aa14.9□□□□□ -0.02
ABCD4-220ENST00000553998 CFTRP13569 1480 aa14.89□□□□□ -0.03
ABCD4-220ENST00000553998 WIZO95785 1651 aa14.84□□□□□ -0.03
ABCD4-220ENST00000553998 URB2Q14146 1524 aaKnown RBP14.8□□□□□ -0.04
ABCD4-220ENST00000553998 RSF1Q96T23 1441 aaPredicted RBP14.75□□□□□ -0.05
ABCD4-220ENST00000553998 TOP2AP11388 1531 aaKnown RBP14.7□□□□□ -0.06
ABCD4-220ENST00000553998 IFT140Q96RY7 1462 aa14.68□□□□□ -0.06
ABCD4-220ENST00000553998 RIMBP3CA6NJZ7 1639 aa14.67□□□□□ -0.06
ABCD4-220ENST00000553998 RIMBP3BA6NNM3 1639 aa14.67□□□□□ -0.06
ABCD4-220ENST00000553998 RIMBP3Q9UFD9 1639 aa14.67□□□□□ -0.06
ABCD4-220ENST00000553998 ZNF608Q9ULD9 1512 aaPredicted RBP14.66□□□□□ -0.06
ABCD4-220ENST00000553998 ARHGEF11O15085 1522 aa14.65□□□□□ -0.06
ABCD4-220ENST00000553998 CYB5RLQ6IPT4 315 aa14.59□□□□□ -0.07
ABCD4-220ENST00000553998 CCDC88BA6NC98 1476 aa14.58□□□□□ -0.08
ABCD4-220ENST00000553998 TOPBP1Q92547 1522 aa14.58□□□□□ -0.08
ABCD4-220ENST00000553998 ABCC8Q09428 1581 aa14.57□□□□□ -0.08
ABCD4-220ENST00000553998 AQRO60306 1485 aaKnown RBP eCLIP14.5□□□□□ -0.091e-7■■■■□ 23.6
ABCD4-220ENST00000553998 PRDM2Q13029 1718 aa14.5□□□□□ -0.09
ABCD4-220ENST00000553998 ARAP1Q96P48 1450 aa14.5□□□□□ -0.09
ABCD4-220ENST00000553998 EIF4G3O43432 1585 aaKnown RBP14.49□□□□□ -0.09
ABCD4-220ENST00000553998 DNMBPQ6XZF7 1577 aa14.48□□□□□ -0.09
ABCD4-220ENST00000553998 TRHP20396 242 aaPredicted RBP14.47□□□□□ -0.09
ABCD4-220ENST00000553998 TARBP1Q13395 1621 aaKnown RBP14.46□□□□□ -0.09
ABCD4-220ENST00000553998 FBLN2P98095 1184 aa14.43□□□□□ -0.1
ABCD4-220ENST00000553998 POLA1P09884 1462 aaPredicted RBP14.43□□□□□ -0.1
ABCD4-220ENST00000553998 SOGA1O94964 1423 aa14.38□□□□□ -0.11
ABCD4-220ENST00000553998 TDRD9Q8NDG6 1382 aaKnown RBP14.37□□□□□ -0.11
ABCD4-220ENST00000553998 CHD1O14646 1710 aa14.37□□□□□ -0.11
ABCD4-220ENST00000553998 RAD54L2Q9Y4B4 1467 aa14.36□□□□□ -0.11
ABCD4-220ENST00000553998 CLASP1Q7Z460 1538 aa14.34□□□□□ -0.11
ABCD4-220ENST00000553998 CHMP7Q8WUX9 453 aaPredicted RBP14.32□□□□□ -0.12
ABCD4-220ENST00000553998 WDR97A6NE52 1622 aa14.32□□□□□ -0.12
ABCD4-220ENST00000553998 SNAPC4Q5SXM2 1469 aa14.31□□□□□ -0.12
ABCD4-220ENST00000553998 MAGI1Q96QZ7 1491 aaPredicted RBP14.3□□□□□ -0.12
ABCD4-220ENST00000553998 GRIN2BQ13224 1484 aa14.27□□□□□ -0.12
ABCD4-220ENST00000553998 AEBP2Q6ZN18 517 aaPredicted RBP14.27□□□□□ -0.13
ABCD4-220ENST00000553998 SYNJ1O43426 1573 aa14.26□□□□□ -0.13
ABCD4-220ENST00000553998 SYNJ2O15056 1496 aa14.26□□□□□ -0.13
ABCD4-220ENST00000553998 FGD5Q6ZNL6 1462 aa14.26□□□□□ -0.13
ABCD4-220ENST00000553998 CUX1P39880 1505 aa14.21□□□□□ -0.13
ABCD4-220ENST00000553998 GAPVD1Q14C86 1478 aa14.21□□□□□ -0.13
ABCD4-220ENST00000553998 ABCA10Q8WWZ4 1543 aa14.14□□□□□ -0.15
ABCD4-220ENST00000553998 NUP160Q12769 1436 aa14.08□□□□□ -0.15
ABCD4-220ENST00000553998 ABCA5Q8WWZ7 1642 aa14.08□□□□□ -0.16
ABCD4-220ENST00000553998 GRIN2AQ12879 1464 aa14.07□□□□□ -0.16
ABCD4-220ENST00000553998 ERCC6L2Q5T890 1561 aa14.05□□□□□ -0.16
ABCD4-220ENST00000553998 PBRM1Q86U86 1689 aa14.04□□□□□ -0.16
ABCD4-220ENST00000553998 CEP170Q5SW79 1584 aa14.02□□□□□ -0.16
ABCD4-220ENST00000553998 WRNQ14191 1432 aaPredicted RBP eCLIP14.02□□□□□ -0.16
ABCD4-220ENST00000553998 FHAD1B1AJZ9 1412 aa14.01□□□□□ -0.17
ABCD4-220ENST00000553998 SHROOM2Q13796 1616 aa13.98□□□□□ -0.17
ABCD4-220ENST00000553998 ADAMTS12P58397 1594 aa13.98□□□□□ -0.17
ABCD4-220ENST00000553998 JPH4Q96JJ6 628 aa13.95□□□□□ -0.18
ABCD4-220ENST00000553998 ERICH3Q5RHP9 1530 aa13.94□□□□□ -0.18
ABCD4-220ENST00000553998 PRG4Q92954 1404 aaPredicted RBP13.93□□□□□ -0.18
ABCD4-220ENST00000553998 ABCC10Q5T3U5 1492 aa13.91□□□□□ -0.18
ABCD4-220ENST00000553998 FAM69CQ0P6D2 419 aa13.9□□□□□ -0.18
ABCD4-220ENST00000553998 TOP2BQ02880 1626 aa13.9□□□□□ -0.19
ABCD4-220ENST00000553998 NPM1P06748 294 aaKnown RBP eCLIP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms