RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 NISCHQ9Y2I1 1504 aa35.22■■■■□ 3.23
LSM6-201ENST00000296581 CCDC180Q9P1Z9 1646 aa30.72■■■□□ 2.51
LSM6-201ENST00000296581 ZCCHC6Q5VYS8 1495 aaKnown RBP29.61■■■□□ 2.33
LSM6-201ENST00000296581 DCAF1Q9Y4B6 1507 aa29.16■■■□□ 2.26
LSM6-201ENST00000296581 DCAF8L2P0C7V8 631 aa28.93■■■□□ 2.22
LSM6-201ENST00000296581 ABCC9O60706 1549 aa28.92■■■□□ 2.22
LSM6-201ENST00000296581 MYO15BQ96JP2 1530 aa28.8■■■□□ 2.2
LSM6-201ENST00000296581 SHROOM4Q9ULL8 1493 aa28.66■■■□□ 2.18
LSM6-201ENST00000296581 NACADO15069 1562 aa28.58■■■□□ 2.17
LSM6-201ENST00000296581 RB1CC1Q8TDY2 1594 aa28.31■■■□□ 2.12
LSM6-201ENST00000296581 SCRIBQ14160 1630 aa28.2■■■□□ 2.1
LSM6-201ENST00000296581 UNC13AQ9UPW8 1703 aa27.78■■■□□ 2.04
LSM6-201ENST00000296581 SUPT5HO00267 1087 aaKnown RBP27.6■■■□□ 2.01
LSM6-201ENST00000296581 BICRAQ9NZM4 1560 aa27.48■■□□□ 1.99
LSM6-201ENST00000296581 CECR2Q9BXF3 1484 aa27.34■■□□□ 1.97
LSM6-201ENST00000296581 RSF1Q96T23 1441 aaPredicted RBP27.33■■□□□ 1.97
LSM6-201ENST00000296581 PABPN1Q86U42 306 aaKnown RBP eCLIP27.25■■□□□ 1.95
LSM6-201ENST00000296581 MROH2BQ7Z745 1585 aa27.2■■□□□ 1.94
LSM6-201ENST00000296581 BAZ1AQ9NRL2 1556 aaPredicted RBP27.19■■□□□ 1.94
LSM6-201ENST00000296581 SMARCA4P51532 1647 aa27.07■■□□□ 1.92
LSM6-201ENST00000296581 WIZO95785 1651 aa26.98■■□□□ 1.91
LSM6-201ENST00000296581 PEG3Q9GZU2 1588 aa26.77■■□□□ 1.88
LSM6-201ENST00000296581 TOP2AP11388 1531 aaKnown RBP26.72■■□□□ 1.87
LSM6-201ENST00000296581 EIF4G1Q04637 1599 aaKnown RBP26.62■■□□□ 1.85
LSM6-201ENST00000296581 ATAD2BQ9ULI0 1458 aa26.6■■□□□ 1.85
LSM6-201ENST00000296581 SMARCA2P51531 1590 aa26.59■■□□□ 1.85
LSM6-201ENST00000296581 CHIC1Q5VXU3 224 aa26.5■■□□□ 1.83
LSM6-201ENST00000296581 BAZ1BQ9UIG0 1483 aaKnown RBP26.44■■□□□ 1.82
LSM6-201ENST00000296581 CCDC88BA6NC98 1476 aa26.43■■□□□ 1.82
LSM6-201ENST00000296581 NCAPD3P42695 1498 aa26.37■■□□□ 1.81
LSM6-201ENST00000296581 HMGXB3Q12766 1538 aa26.35■■□□□ 1.81
LSM6-201ENST00000296581 CC2D2AQ9P2K1 1620 aa26.21■■□□□ 1.79
LSM6-201ENST00000296581 TRIM41Q8WV44 630 aa25.97■■□□□ 1.75
LSM6-201ENST00000296581 ABCC8Q09428 1581 aa25.87■■□□□ 1.73
LSM6-201ENST00000296581 CFTRP13569 1480 aa25.8■■□□□ 1.72
LSM6-201ENST00000296581 PRDM2Q13029 1718 aa25.71■■□□□ 1.71
LSM6-201ENST00000296581 WRNQ14191 1432 aaPredicted RBP eCLIP25.71■■□□□ 1.71
LSM6-201ENST00000296581 CADPSQ9ULU8 1353 aa25.68■■□□□ 1.7
LSM6-201ENST00000296581 SYNJ1O43426 1573 aa25.62■■□□□ 1.69
LSM6-201ENST00000296581 TOP2BQ02880 1626 aa25.53■■□□□ 1.68
LSM6-201ENST00000296581 BIVM-ERCC5R4GMW8 1640 aa25.52■■□□□ 1.68
LSM6-201ENST00000296581 DNAJC5BQ9UF47 199 aa25.49■■□□□ 1.67
LSM6-201ENST00000296581 LAMC3Q9Y6N6 1575 aa25.47■■□□□ 1.67
LSM6-201ENST00000296581 FAM9AQ8IZU1 332 aaPredicted RBP25.46■■□□□ 1.67
LSM6-201ENST00000296581 LOC105371045A0A1W2PR82 267 aa25.45■■□□□ 1.66
LSM6-201ENST00000296581 CUX1P39880 1505 aa25.43■■□□□ 1.66
LSM6-201ENST00000296581 NESP48681 1621 aa25.42■■□□□ 1.66
LSM6-201ENST00000296581 SOGA1O94964 1423 aa25.39■■□□□ 1.66
LSM6-201ENST00000296581 FANCD2Q9BXW9 1451 aa25.39■■□□□ 1.66
LSM6-201ENST00000296581 EEA1Q15075 1411 aa25.39■■□□□ 1.65
LSM6-201ENST00000296581 RUSC2Q8N2Y8 1516 aa25.3■■□□□ 1.64
LSM6-201ENST00000296581 PDS5BQ9NTI5 1447 aa25.24■■□□□ 1.63
LSM6-201ENST00000296581 CEP164Q9UPV0 1460 aa25.23■■□□□ 1.63
LSM6-201ENST00000296581 CSRNP3Q8WYN3 585 aa25.2■■□□□ 1.63
LSM6-201ENST00000296581 DNMBPQ6XZF7 1577 aa25.2■■□□□ 1.62
LSM6-201ENST00000296581 KIF21AQ7Z4S6 1674 aa25.15■■□□□ 1.62
LSM6-201ENST00000296581 TOPBP1Q92547 1522 aa25.14■■□□□ 1.61
LSM6-201ENST00000296581 FGD5Q6ZNL6 1462 aa25.14■■□□□ 1.61
LSM6-201ENST00000296581 URB2Q14146 1524 aaKnown RBP25.09■■□□□ 1.61
LSM6-201ENST00000296581 KIF21BO75037 1637 aa25.07■■□□□ 1.6
LSM6-201ENST00000296581 EHMT2Q96KQ7 1210 aa25.06■■□□□ 1.6
LSM6-201ENST00000296581 KIF27Q86VH2 1401 aa25.05■■□□□ 1.6
LSM6-201ENST00000296581 GOLGA3Q08378 1498 aa25.03■■□□□ 1.6
LSM6-201ENST00000296581 POLA1P09884 1462 aaPredicted RBP25.02■■□□□ 1.6
LSM6-201ENST00000296581 CUX2O14529 1486 aa24.97■■□□□ 1.59
LSM6-201ENST00000296581 TNIKQ9UKE5 1360 aa24.96■■□□□ 1.59
LSM6-201ENST00000296581 ABCA10Q8WWZ4 1543 aa24.94■■□□□ 1.58
LSM6-201ENST00000296581 PRXQ9BXM0 1461 aa24.92■■□□□ 1.58
LSM6-201ENST00000296581 MRC2Q9UBG0 1479 aa24.92■■□□□ 1.58
LSM6-201ENST00000296581 RAD54L2Q9Y4B4 1467 aa24.91■■□□□ 1.58
LSM6-201ENST00000296581 ERICH3Q5RHP9 1530 aa24.89■■□□□ 1.58
LSM6-201ENST00000296581 RAPGEF2Q9Y4G8 1499 aa24.89■■□□□ 1.57
LSM6-201ENST00000296581 WDR97A6NE52 1622 aa24.88■■□□□ 1.57
LSM6-201ENST00000296581 UBTFP17480 764 aaKnown RBP24.84■■□□□ 1.57
LSM6-201ENST00000296581 IGF1RP08069 1367 aa24.83■■□□□ 1.56
LSM6-201ENST00000296581 WDR62O43379 1518 aa24.82■■□□□ 1.56
LSM6-201ENST00000296581 CEP162Q5TB80 1403 aa24.81■■□□□ 1.56
LSM6-201ENST00000296581 ERCC6Q03468 1493 aa24.78■■□□□ 1.56
LSM6-201ENST00000296581 TARBP1Q13395 1621 aaKnown RBP24.78■■□□□ 1.56
LSM6-201ENST00000296581 ABCA5Q8WWZ7 1642 aa24.75■■□□□ 1.55
LSM6-201ENST00000296581 THOC2Q8NI27 1593 aaKnown RBP24.74■■□□□ 1.55
LSM6-201ENST00000296581 CARMIL1Q5VZK9 1371 aa24.69■■□□□ 1.54
LSM6-201ENST00000296581 CUL7Q14999 1698 aa24.67■■□□□ 1.54
LSM6-201ENST00000296581 GAPVD1Q14C86 1478 aa24.65■■□□□ 1.54
LSM6-201ENST00000296581 TDRD9Q8NDG6 1382 aaKnown RBP24.65■■□□□ 1.54
LSM6-201ENST00000296581 IFT140Q96RY7 1462 aa24.63■■□□□ 1.53
LSM6-201ENST00000296581 CLIP1P30622 1438 aa24.61■■□□□ 1.53
LSM6-201ENST00000296581 PBRM1Q86U86 1689 aa24.54■■□□□ 1.52
LSM6-201ENST00000296581 AQRO60306 1485 aaKnown RBP eCLIP24.49■■□□□ 1.51
LSM6-201ENST00000296581 ZNF608Q9ULD9 1512 aaPredicted RBP24.48■■□□□ 1.51
LSM6-201ENST00000296581 GRIN2BQ13224 1484 aa24.45■■□□□ 1.51
LSM6-201ENST00000296581 EIF4G3O43432 1585 aaKnown RBP24.42■■□□□ 1.5
LSM6-201ENST00000296581 VPS8Q8N3P4 1428 aa24.42■■□□□ 1.5
LSM6-201ENST00000296581 ADAMTS12P58397 1594 aa24.41■■□□□ 1.5
LSM6-201ENST00000296581 CTTNBP2Q8WZ74 1663 aa24.4■■□□□ 1.5
LSM6-201ENST00000296581 FHAD1B1AJZ9 1412 aa24.4■■□□□ 1.5
LSM6-201ENST00000296581 ARAP1Q96P48 1450 aa24.39■■□□□ 1.5
LSM6-201ENST00000296581 RANGAP1P46060 587 aaPredicted RBP24.38■■□□□ 1.49
LSM6-201ENST00000296581 ARHGAP35Q9NRY4 1499 aa24.37■■□□□ 1.49
LSM6-201ENST00000296581 TRIM26Q12899 539 aaPredicted RBP24.35■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms