RNA–Protein interactions for RNA: ENST00000504181.1

LSM6-204, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM6, Length 549 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-204ENST00000504181 NISCHQ9Y2I1 1504 aa32.82■■■□□ 2.85
LSM6-204ENST00000504181 ABCC9O60706 1549 aa30.86■■■□□ 2.53
LSM6-204ENST00000504181 CCDC180Q9P1Z9 1646 aa30.02■■■□□ 2.4
LSM6-204ENST00000504181 DNAJC5BQ9UF47 199 aa29.72■■■□□ 2.35
LSM6-204ENST00000504181 RB1CC1Q8TDY2 1594 aa28.96■■■□□ 2.23
LSM6-204ENST00000504181 UNC13AQ9UPW8 1703 aa28.57■■■□□ 2.16
LSM6-204ENST00000504181 PABPN1Q86U42 306 aaKnown RBP eCLIP28.51■■■□□ 2.15
LSM6-204ENST00000504181 NACADO15069 1562 aa28.49■■■□□ 2.15
LSM6-204ENST00000504181 BICRAQ9NZM4 1560 aa28.19■■■□□ 2.1
LSM6-204ENST00000504181 DCAF8L2P0C7V8 631 aa28.09■■■□□ 2.09
LSM6-204ENST00000504181 DNAJC5Q9H3Z4 198 aa27.95■■■□□ 2.06
LSM6-204ENST00000504181 CC2D2AQ9P2K1 1620 aa27.89■■■□□ 2.05
LSM6-204ENST00000504181 CECR2Q9BXF3 1484 aa27.86■■■□□ 2.05
LSM6-204ENST00000504181 MYO15BQ96JP2 1530 aa27.7■■■□□ 2.02
LSM6-204ENST00000504181 SHROOM4Q9ULL8 1493 aa27.57■■■□□ 2
LSM6-204ENST00000504181 EIF4G1Q04637 1599 aaKnown RBP27.56■■■□□ 2
LSM6-204ENST00000504181 SCRIBQ14160 1630 aa27.29■■□□□ 1.96
LSM6-204ENST00000504181 DCAF1Q9Y4B6 1507 aa27.01■■□□□ 1.91
LSM6-204ENST00000504181 ZCCHC6Q5VYS8 1495 aaKnown RBP27■■□□□ 1.91
LSM6-204ENST00000504181 CUX2O14529 1486 aa26.95■■□□□ 1.91
LSM6-204ENST00000504181 ERCC6Q03468 1493 aa26.7■■□□□ 1.87
LSM6-204ENST00000504181 TRIM41Q8WV44 630 aa26.42■■□□□ 1.82
LSM6-204ENST00000504181 NESP48681 1621 aa26.25■■□□□ 1.79
LSM6-204ENST00000504181 THOC2Q8NI27 1593 aaKnown RBP26.24■■□□□ 1.79
LSM6-204ENST00000504181 NCAPD3P42695 1498 aa26.23■■□□□ 1.79
LSM6-204ENST00000504181 AEBP2Q6ZN18 517 aaPredicted RBP26.06■■□□□ 1.76
LSM6-204ENST00000504181 ATAD2BQ9ULI0 1458 aa26.05■■□□□ 1.76
LSM6-204ENST00000504181 KIF21AQ7Z4S6 1674 aa26.05■■□□□ 1.76
LSM6-204ENST00000504181 HMGXB3Q12766 1538 aa26.04■■□□□ 1.76
LSM6-204ENST00000504181 SMARCA2P51531 1590 aa26.03■■□□□ 1.76
LSM6-204ENST00000504181 LAMC3Q9Y6N6 1575 aa25.91■■□□□ 1.74
LSM6-204ENST00000504181 SMARCA4P51532 1647 aa25.91■■□□□ 1.74
LSM6-204ENST00000504181 BAZ1BQ9UIG0 1483 aaKnown RBP25.79■■□□□ 1.72
LSM6-204ENST00000504181 BAZ1AQ9NRL2 1556 aaPredicted RBP25.78■■□□□ 1.72
LSM6-204ENST00000504181 PDS5BQ9NTI5 1447 aa25.69■■□□□ 1.7
LSM6-204ENST00000504181 PEG3Q9GZU2 1588 aa25.59■■□□□ 1.69
LSM6-204ENST00000504181 MRC2Q9UBG0 1479 aa25.59■■□□□ 1.69
LSM6-204ENST00000504181 WDR62O43379 1518 aa25.58■■□□□ 1.69
LSM6-204ENST00000504181 OSCARQ8IYS5 282 aa25.48■■□□□ 1.67
LSM6-204ENST00000504181 RIMBP3CA6NJZ7 1639 aa25.47■■□□□ 1.67
LSM6-204ENST00000504181 RIMBP3BA6NNM3 1639 aa25.47■■□□□ 1.67
LSM6-204ENST00000504181 RIMBP3Q9UFD9 1639 aa25.47■■□□□ 1.67
LSM6-204ENST00000504181 CADPSQ9ULU8 1353 aa25.38■■□□□ 1.65
LSM6-204ENST00000504181 MROH2BQ7Z745 1585 aa25.32■■□□□ 1.64
LSM6-204ENST00000504181 CEP164Q9UPV0 1460 aa25.31■■□□□ 1.64
LSM6-204ENST00000504181 ARHGEF11O15085 1522 aa25.2■■□□□ 1.62
LSM6-204ENST00000504181 FANCD2Q9BXW9 1451 aa25.17■■□□□ 1.62
LSM6-204ENST00000504181 WIZO95785 1651 aa25.07■■□□□ 1.6
LSM6-204ENST00000504181 URB2Q14146 1524 aaKnown RBP25.06■■□□□ 1.6
LSM6-204ENST00000504181 TRHP20396 242 aaPredicted RBP25.05■■□□□ 1.6
LSM6-204ENST00000504181 CHIC1Q5VXU3 224 aa24.99■■□□□ 1.59
LSM6-204ENST00000504181 CYB5RLQ6IPT4 315 aa24.99■■□□□ 1.59
LSM6-204ENST00000504181 CFTRP13569 1480 aa24.92■■□□□ 1.58
LSM6-204ENST00000504181 CHD1O14646 1710 aa24.92■■□□□ 1.58
LSM6-204ENST00000504181 PRDM2Q13029 1718 aa24.92■■□□□ 1.58
LSM6-204ENST00000504181 ZNF608Q9ULD9 1512 aaPredicted RBP24.9■■□□□ 1.58
LSM6-204ENST00000504181 ARAP1Q96P48 1450 aa24.88■■□□□ 1.57
LSM6-204ENST00000504181 EIF4G3O43432 1585 aaKnown RBP24.81■■□□□ 1.56
LSM6-204ENST00000504181 IFT140Q96RY7 1462 aa24.79■■□□□ 1.56
LSM6-204ENST00000504181 RSF1Q96T23 1441 aaPredicted RBP24.64■■□□□ 1.54
LSM6-204ENST00000504181 TOPBP1Q92547 1522 aa24.61■■□□□ 1.53
LSM6-204ENST00000504181 TOP2AP11388 1531 aaKnown RBP24.59■■□□□ 1.53
LSM6-204ENST00000504181 FBLN2P98095 1184 aa24.54■■□□□ 1.52
LSM6-204ENST00000504181 TARBP1Q13395 1621 aaKnown RBP24.53■■□□□ 1.52
LSM6-204ENST00000504181 AQRO60306 1485 aaKnown RBP eCLIP24.52■■□□□ 1.52
LSM6-204ENST00000504181 DNMBPQ6XZF7 1577 aa24.46■■□□□ 1.51
LSM6-204ENST00000504181 CLASP1Q7Z460 1538 aa24.44■■□□□ 1.5
LSM6-204ENST00000504181 ABCC8Q09428 1581 aa24.42■■□□□ 1.5
LSM6-204ENST00000504181 SYNJ1O43426 1573 aa24.33■■□□□ 1.49
LSM6-204ENST00000504181 CCDC88BA6NC98 1476 aa24.28■■□□□ 1.48
LSM6-204ENST00000504181 POLA1P09884 1462 aaPredicted RBP24.28■■□□□ 1.48
LSM6-204ENST00000504181 SNAPC4Q5SXM2 1469 aa24.28■■□□□ 1.48
LSM6-204ENST00000504181 RAD54L2Q9Y4B4 1467 aa24.22■■□□□ 1.47
LSM6-204ENST00000504181 GAPVD1Q14C86 1478 aa24.2■■□□□ 1.47
LSM6-204ENST00000504181 TDRD9Q8NDG6 1382 aaKnown RBP24.19■■□□□ 1.46
LSM6-204ENST00000504181 CHMP7Q8WUX9 453 aaPredicted RBP24.16■■□□□ 1.46
LSM6-204ENST00000504181 KIF13AQ9H1H9 1805 aa24.16■■□□□ 1.46
LSM6-204ENST00000504181 WDR97A6NE52 1622 aa24.16■■□□□ 1.46
LSM6-204ENST00000504181 MAGI1Q96QZ7 1491 aaPredicted RBP24.13■■□□□ 1.45
LSM6-204ENST00000504181 PBRM1Q86U86 1689 aa24.11■■□□□ 1.45
LSM6-204ENST00000504181 SOGA1O94964 1423 aa24.1■■□□□ 1.45
LSM6-204ENST00000504181 ILDR1Q86SU0 546 aaPredicted RBP24.09■■□□□ 1.45
LSM6-204ENST00000504181 SYNJ2O15056 1496 aa24.07■■□□□ 1.44
LSM6-204ENST00000504181 GRIN2BQ13224 1484 aa24.03■■□□□ 1.44
LSM6-204ENST00000504181 ERCC6L2Q5T890 1561 aa24.03■■□□□ 1.44
LSM6-204ENST00000504181 FGD5Q6ZNL6 1462 aa24.01■■□□□ 1.43
LSM6-204ENST00000504181 CEP170Q5SW79 1584 aa23.86■■□□□ 1.41
LSM6-204ENST00000504181 CUX1P39880 1505 aa23.84■■□□□ 1.41
LSM6-204ENST00000504181 KDM4FA0A1W2PPD8 638 aa23.8■■□□□ 1.4
LSM6-204ENST00000504181 ABCA5Q8WWZ7 1642 aa23.8■■□□□ 1.4
LSM6-204ENST00000504181 SHROOM2Q13796 1616 aa23.79■■□□□ 1.4
LSM6-204ENST00000504181 KDM6BO15054 1643 aa23.75■■□□□ 1.39
LSM6-204ENST00000504181 TSPOAP1O95153 1857 aa23.75■■□□□ 1.39
LSM6-204ENST00000504181 GRIN2AQ12879 1464 aa23.75■■□□□ 1.39
LSM6-204ENST00000504181 ADAMTS12P58397 1594 aa23.69■■□□□ 1.38
LSM6-204ENST00000504181 DIP2BQ9P265 1576 aa23.68■■□□□ 1.38
LSM6-204ENST00000504181 NUP160Q12769 1436 aa23.67■■□□□ 1.38
LSM6-204ENST00000504181 ABCC10Q5T3U5 1492 aa23.66■■□□□ 1.38
LSM6-204ENST00000504181 FAM69CQ0P6D2 419 aa23.65■■□□□ 1.38
LSM6-204ENST00000504181 ABCA10Q8WWZ4 1543 aa23.64■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms