Protein–RNA interactions for Protein: Q07955

SRSF1, Serine/arginine-rich splicing factor 1, humanhuman

Known RBP eCLIP

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRSF1Q07955 PDXDC1-202ENST00000396410 4521 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -16e-7■■■□□ 17.9
SRSF1Q07955 PDXDC1-210ENST00000563679 2963 ntTSL 2 BASIC7.46□□□□□ -1.216e-7■■■□□ 17.9
SRSF1Q07955 TOP3A-202ENST00000461127 823 ntTSL 317.81■□□□□ 0.443e-7■■■□□ 17.9
SRSF1Q07955 TOP3A-217ENST00000584582 3661 ntTSL 58.6□□□□□ -1.033e-7■■■□□ 17.9
SRSF1Q07955 TOP3A-201ENST00000321105 4056 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.053e-7■■■□□ 17.9
SRSF1Q07955 TOP3A-214ENST00000582981 3239 ntTSL 28.15□□□□□ -1.13e-7■■■□□ 17.9
SRSF1Q07955 TOP3A-209ENST00000580095 2929 ntTSL 1 (best)7.87□□□□□ -1.153e-7■■■□□ 17.9
SRSF1Q07955 TOP3A-208ENST00000542570 4116 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.163e-7■■■□□ 17.9
SRSF1Q07955 TOP3A-203ENST00000469739 3196 ntTSL 27.17□□□□□ -1.263e-7■■■□□ 17.9
SRSF1Q07955 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC16.52■□□□□ 0.241e-6■■■□□ 17.9
SRSF1Q07955 BRWD1-212ENST00000470108 1176 ntTSL 35.95□□□□□ -1.461e-6■■■□□ 17.9
SRSF1Q07955 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.257e-7■■■□□ 17.9
SRSF1Q07955 C9orf3-207ENST00000445181 873 ntTSL 322.35■■□□□ 1.176e-7■■■□□ 17.9
SRSF1Q07955 C9orf3-215ENST00000478473 895 ntTSL 322.15■■□□□ 1.146e-7■■■□□ 17.9
SRSF1Q07955 C9orf3-213ENST00000471978 478 ntTSL 221.67■■□□□ 1.066e-7■■■□□ 17.9
SRSF1Q07955 C9orf3-211ENST00000463372 919 ntTSL 315.17■□□□□ 0.026e-7■■■□□ 17.9
SRSF1Q07955 C9orf3-217ENST00000479161 942 ntTSL 514.17□□□□□ -0.146e-7■■■□□ 17.9
SRSF1Q07955 C9orf3-206ENST00000428313 2288 ntTSL 1 (best)12.98□□□□□ -0.336e-7■■■□□ 17.9
SRSF1Q07955 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC11.49□□□□□ -0.576e-7■■■□□ 17.9
SRSF1Q07955 C9orf3-203ENST00000375315 3136 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.866e-7■■■□□ 17.9
SRSF1Q07955 MYH10-202ENST00000360416 7762 ntTSL 1 (best) BASIC8.86□□□□□ -0.992e-7■■■□□ 17.9
SRSF1Q07955 MYH10-201ENST00000269243 7662 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.12e-7■■■□□ 17.9
SRSF1Q07955 MYH10-203ENST00000379980 7694 ntTSL 1 (best) BASIC8.15□□□□□ -1.12e-7■■■□□ 17.9
SRSF1Q07955 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC11.56□□□□□ -0.568e-7■■■□□ 17.9
SRSF1Q07955 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.68e-7■■■□□ 17.9
SRSF1Q07955 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC4.71□□□□□ -1.668e-7■■■□□ 17.9
SRSF1Q07955 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.78e-7■■■□□ 17.9
SRSF1Q07955 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC3.87□□□□□ -1.798e-7■■■□□ 17.9
SRSF1Q07955 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC12.33□□□□□ -0.441e-6■■■□□ 17.9
SRSF1Q07955 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.461e-6■■■□□ 17.9
SRSF1Q07955 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.531e-6■■■□□ 17.9
SRSF1Q07955 GTPBP3-217ENST00000598493 808 ntTSL 520.18■□□□□ 0.823e-9■■■□□ 17.9
SRSF1Q07955 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC18.79■□□□□ 0.63e-9■■■□□ 17.9
SRSF1Q07955 GTPBP3-221ENST00000600610 1105 ntTSL 1 (best)18.72■□□□□ 0.593e-9■■■□□ 17.9
SRSF1Q07955 GTPBP3-223ENST00000600995 812 ntTSL 218.72■□□□□ 0.593e-9■■■□□ 17.9
SRSF1Q07955 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC18.5■□□□□ 0.553e-9■■■□□ 17.9
SRSF1Q07955 GTPBP3-205ENST00000594018 934 ntTSL 517.55■□□□□ 0.43e-9■■■□□ 17.9
SRSF1Q07955 GTPBP3-213ENST00000596166 1024 ntTSL 317.55■□□□□ 0.43e-9■■■□□ 17.9
SRSF1Q07955 GTPBP3-211ENST00000596001 1072 ntTSL 517.46■□□□□ 0.393e-9■■■□□ 17.9
SRSF1Q07955 GTPBP3-214ENST00000596218 897 ntTSL 317.4■□□□□ 0.383e-9■■■□□ 17.9
SRSF1Q07955 GTPBP3-225ENST00000601261 606 ntTSL 417.38■□□□□ 0.373e-9■■■□□ 17.9
SRSF1Q07955 GTPBP3-226ENST00000601983 541 ntTSL 417.38■□□□□ 0.373e-9■■■□□ 17.9
SRSF1Q07955 MED15-227ENST00000486656 577 ntTSL 417.36■□□□□ 0.373e-9■■■□□ 17.9
SRSF1Q07955 GTPBP3-228ENST00000602165 617 ntTSL 417.32■□□□□ 0.363e-9■■■□□ 17.9
SRSF1Q07955 GTPBP3-206ENST00000594345 1004 ntTSL 317.06■□□□□ 0.323e-9■■■□□ 17.9
SRSF1Q07955 GTPBP3-224ENST00000601213 584 ntTSL 416.59■□□□□ 0.253e-9■■■□□ 17.9
SRSF1Q07955 GTPBP3-215ENST00000596941 678 ntTSL 216.59■□□□□ 0.253e-9■■■□□ 17.9
SRSF1Q07955 GTPBP3-204ENST00000593297 555 ntTSL 416.41■□□□□ 0.223e-9■■■□□ 17.9
SRSF1Q07955 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC15.49■□□□□ 0.073e-9■■■□□ 17.9
SRSF1Q07955 MED15-213ENST00000438962 573 ntTSL 415.09■□□□□ 0.013e-9■■■□□ 17.9
SRSF1Q07955 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.293e-9■■■□□ 17.9
SRSF1Q07955 GTPBP3-216ENST00000598038 2917 ntTSL 512.82□□□□□ -0.363e-9■■■□□ 17.9
SRSF1Q07955 WASH3P-203ENST00000558686 561 ntTSL 417.33■□□□□ 0.363e-8■■■□□ 17.9
SRSF1Q07955 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC13.44□□□□□ -0.263e-8■■■□□ 17.9
SRSF1Q07955 WASH3P-207ENST00000560956 1394 ntBASIC12.75□□□□□ -0.373e-8■■■□□ 17.9
SRSF1Q07955 WASH3P-201ENST00000354296 955 ntTSL 211.99□□□□□ -0.493e-8■■■□□ 17.9
SRSF1Q07955 WASH3P-205ENST00000559163 772 ntTSL 511.99□□□□□ -0.493e-8■■■□□ 17.9
SRSF1Q07955 WASH3P-202ENST00000557932 1679 ntTSL 511.95□□□□□ -0.53e-8■■■□□ 17.9
SRSF1Q07955 WASH3P-206ENST00000559884 427 ntTSL 5 BASIC9.47□□□□□ -0.893e-8■■■□□ 17.9
SRSF1Q07955 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC15.9■□□□□ 0.142e-7■■■□□ 17.8
SRSF1Q07955 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.052e-7■■■□□ 17.8
SRSF1Q07955 SREBF2-202ENST00000424354 5699 ntTSL 1 (best)11.53□□□□□ -0.562e-7■■■□□ 17.8
SRSF1Q07955 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.022e-8■■■□□ 17.8
SRSF1Q07955 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC14.83□□□□□ -0.042e-8■■■□□ 17.8
SRSF1Q07955 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.252e-8■■■□□ 17.8
SRSF1Q07955 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC19.91■□□□□ 0.781e-6■■■□□ 17.8
SRSF1Q07955 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC17.16■□□□□ 0.341e-6■■■□□ 17.8
SRSF1Q07955 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.64■□□□□ 0.251e-6■■■□□ 17.8
SRSF1Q07955 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.21e-6■■■□□ 17.8
SRSF1Q07955 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC14.25□□□□□ -0.131e-6■■■□□ 17.8
SRSF1Q07955 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC13.89□□□□□ -0.191e-6■■■□□ 17.8
SRSF1Q07955 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21e-6■■■□□ 17.8
SRSF1Q07955 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC12.31□□□□□ -0.441e-6■■■□□ 17.8
SRSF1Q07955 PRMT2-205ENST00000397637 2880 ntAPPRIS P1 TSL 2 BASIC8.79□□□□□ -11e-6■■■□□ 17.8
SRSF1Q07955 ZCCHC2-206ENST00000588676 1877 nt22.44■■□□□ 1.181e-5■■■□□ 17.8
SRSF1Q07955 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.111e-5■■■□□ 17.8
SRSF1Q07955 DZIP1-205ENST00000466027 1580 ntTSL 221.7■■□□□ 1.061e-5■■■□□ 17.8
SRSF1Q07955 LIMK2-206ENST00000462625 1042 ntTSL 221.46■■□□□ 1.031e-5■■■□□ 17.8
SRSF1Q07955 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.681e-5■■■□□ 17.8
SRSF1Q07955 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.569e-7■■■□□ 17.8
SRSF1Q07955 RAD9A-205ENST00000538013 924 ntTSL 518.37■□□□□ 0.539e-7■■■□□ 17.8
SRSF1Q07955 RAD9A-206ENST00000541132 586 ntTSL 318.15■□□□□ 0.59e-7■■■□□ 17.8
SRSF1Q07955 RAD9A-209ENST00000544620 829 ntTSL 318.15■□□□□ 0.59e-7■■■□□ 17.8
SRSF1Q07955 POLE-205ENST00000503265 1501 ntTSL 417.88■□□□□ 0.451e-5■■■□□ 17.8
SRSF1Q07955 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.425e-7■■■□□ 17.8
SRSF1Q07955 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.341e-5■■■□□ 17.8
SRSF1Q07955 ZCCHC2-210ENST00000591632 608 ntTSL 317.06■□□□□ 0.321e-5■■■□□ 17.8
SRSF1Q07955 CTNNBL1-205ENST00000447935 778 ntTSL 517.06■□□□□ 0.321e-5■■■□□ 17.8
SRSF1Q07955 ITGB1BP1-206ENST00000460001 663 ntTSL 316.96■□□□□ 0.311e-5■■■□□ 17.8
SRSF1Q07955 ITGB1BP1-219ENST00000494563 699 ntTSL 316.96■□□□□ 0.311e-5■■■□□ 17.8
SRSF1Q07955 DZIP1-206ENST00000466569 1783 ntTSL 1 (best)16.95■□□□□ 0.31e-5■■■□□ 17.8
SRSF1Q07955 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC16.64■□□□□ 0.251e-5■■■□□ 17.8
SRSF1Q07955 DPH7-207ENST00000475100 919 ntTSL 316.44■□□□□ 0.225e-7■■■□□ 17.8
SRSF1Q07955 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.23■□□□□ 0.191e-5■■■□□ 17.8
SRSF1Q07955 POLG-208ENST00000530292 1326 ntTSL 516.19■□□□□ 0.181e-5■■■□□ 17.8
SRSF1Q07955 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.181e-5■■■□□ 17.8
SRSF1Q07955 MRPS25-204ENST00000447299 723 ntTSL 316.12■□□□□ 0.174e-13■■■□□ 17.8
SRSF1Q07955 POLG-209ENST00000530715 372 ntTSL 316.05■□□□□ 0.161e-5■■■□□ 17.8
SRSF1Q07955 ZCCHC2-202ENST00000585873 5652 ntTSL 1 (best)16.03■□□□□ 0.161e-5■■■□□ 17.8
SRSF1Q07955 RAD9A-207ENST00000542139 578 ntTSL 415.85■□□□□ 0.139e-7■■■□□ 17.8
Retrieved 100 of 14,836 protein–RNA pairs in 67.1 ms