RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 DCAF8L2P0C7V8 631 aa27.27■■□□□ 1.96
COL18A1-203ENST00000359759 SUPT5HO00267 1087 aaKnown RBP26.01■■□□□ 1.75
COL18A1-203ENST00000359759 EHMT2Q96KQ7 1210 aa25.92■■□□□ 1.74
COL18A1-203ENST00000359759 PELP1Q8IZL8 1130 aaKnown RBP25.87■■□□□ 1.73
COL18A1-203ENST00000359759 SHROOM4Q9ULL8 1493 aa25.34■■□□□ 1.65
COL18A1-203ENST00000359759 ERICH6Q7L0X2 663 aa25.17■■□□□ 1.62
COL18A1-203ENST00000359759 TTBK1Q5TCY1 1321 aaPredicted RBP25.09■■□□□ 1.61
COL18A1-203ENST00000359759 APLP2Q06481 763 aa25■■□□□ 1.59
COL18A1-203ENST00000359759 PCGF6Q9BYE7 350 aa24.79■■□□□ 1.56
COL18A1-203ENST00000359759 FAM9AQ8IZU1 332 aaPredicted RBP24.76■■□□□ 1.55
COL18A1-203ENST00000359759 CCER1Q8TC90 406 aaPredicted RBP24.72■■□□□ 1.55
COL18A1-203ENST00000359759 CENPBP07199 599 aaPredicted RBP24.68■■□□□ 1.54
COL18A1-203ENST00000359759 RANGAP1P46060 587 aaPredicted RBP24.54■■□□□ 1.52
COL18A1-203ENST00000359759 YTHDC1Q96MU7 727 aaKnown RBP24.46■■□□□ 1.51
COL18A1-203ENST00000359759 MYT1Q01538 1121 aa24.39■■□□□ 1.49
COL18A1-203ENST00000359759 ATP1B4Q9UN42 357 aaPredicted RBP24.28■■□□□ 1.48
COL18A1-203ENST00000359759 NEFLP07196 543 aa24.27■■□□□ 1.48
COL18A1-203ENST00000359759 ZEB1P37275 1124 aaPredicted RBP24.18■■□□□ 1.46
COL18A1-203ENST00000359759 NISCHQ9Y2I1 1504 aa24.01■■□□□ 1.43
COL18A1-203ENST00000359759 PPARGC1BQ86YN6 1023 aaKnown RBP23.88■■□□□ 1.41
COL18A1-203ENST00000359759 TRIM41Q8WV44 630 aa23.85■■□□□ 1.41
COL18A1-203ENST00000359759 DAXXQ9UER7 740 aaPredicted RBP23.84■■□□□ 1.41
COL18A1-203ENST00000359759 UBTFP17480 764 aaKnown RBP23.8■■□□□ 1.4
COL18A1-203ENST00000359759 POLR3GLQ9BT43 218 aa23.67■■□□□ 1.38
COL18A1-203ENST00000359759 CNGB1Q14028 1251 aaPredicted RBP23.6■■□□□ 1.37
COL18A1-203ENST00000359759 ITGAEP38570 1179 aa23.44■■□□□ 1.34
COL18A1-203ENST00000359759 HRCP23327 699 aa23.35■■□□□ 1.33
COL18A1-203ENST00000359759 MYT1LQ9UL68 1186 aa23.33■■□□□ 1.33
COL18A1-203ENST00000359759 TRIM26Q12899 539 aaPredicted RBP23.3■■□□□ 1.32
COL18A1-203ENST00000359759 ZNF316A6NFI3 1004 aaPredicted RBP23.3■■□□□ 1.32
COL18A1-203ENST00000359759 RTL5Q5HYW3 569 aaPredicted RBP23.28■■□□□ 1.32
COL18A1-203ENST00000359759 CHIC1Q5VXU3 224 aa23.22■■□□□ 1.31
COL18A1-203ENST00000359759 SLC4A1APQ9BWU0 796 aaKnown RBP23.19■■□□□ 1.3
COL18A1-203ENST00000359759 CLSPNQ9HAW4 1339 aa23.19■■□□□ 1.3
COL18A1-203ENST00000359759 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.15■■□□□ 1.3
COL18A1-203ENST00000359759 HNRNPUL2Q1KMD3 747 aaKnown RBP23.15■■□□□ 1.3
COL18A1-203ENST00000359759 BCANQ96GW7 911 aa23■■□□□ 1.27
COL18A1-203ENST00000359759 LOC105371045A0A1W2PR82 267 aa22.95■■□□□ 1.26
COL18A1-203ENST00000359759 DIEXFQ68CQ4 756 aaKnown RBP22.9■■□□□ 1.26
COL18A1-203ENST00000359759 BCL11AQ9H165 835 aa22.76■■□□□ 1.23
COL18A1-203ENST00000359759 GTF3C3Q9Y5Q9 886 aa22.73■■□□□ 1.23
COL18A1-203ENST00000359759 NEUROD1Q13562 356 aa22.64■■□□□ 1.22
COL18A1-203ENST00000359759 CDK11AQ9UQ88 783 aaPredicted RBP22.63■■□□□ 1.21
COL18A1-203ENST00000359759 FAM50AQ14320 339 aaKnown RBP22.61■■□□□ 1.21
COL18A1-203ENST00000359759 TRIM52Q96A61 297 aa22.57■■□□□ 1.2
COL18A1-203ENST00000359759 ZBTB47Q9UFB7 747 aaPredicted RBP22.54■■□□□ 1.2
COL18A1-203ENST00000359759 SLC24A1O60721 1099 aa22.51■■□□□ 1.19
COL18A1-203ENST00000359759 ZNF326Q5BKZ1 582 aaKnown RBP22.49■■□□□ 1.19
COL18A1-203ENST00000359759 EIF5BO60841 1220 aaKnown RBP22.45■■□□□ 1.18
COL18A1-203ENST00000359759 CANXP27824 592 aaKnown RBP22.44■■□□□ 1.18
COL18A1-203ENST00000359759 ANP32CO43423 234 aa22.44■■□□□ 1.18
COL18A1-203ENST00000359759 NPM2Q86SE8 214 aaKnown RBP22.42■■□□□ 1.18
COL18A1-203ENST00000359759 ANP32AP39687 249 aaKnown RBP22.3■■□□□ 1.16
COL18A1-203ENST00000359759 ACIN1Q9UKV3 1341 aaKnown RBP22.11■■□□□ 1.13
COL18A1-203ENST00000359759 ANP32BQ92688 251 aaKnown RBP22.09■■□□□ 1.13
COL18A1-203ENST00000359759 ARXQ96QS3 562 aa22.06■■□□□ 1.12
COL18A1-203ENST00000359759 NEFMP07197 916 aa22.05■■□□□ 1.12
COL18A1-203ENST00000359759 PABPN1Q86U42 306 aaKnown RBP eCLIP22.05■■□□□ 1.124e-11■■■□□ 17.5
COL18A1-203ENST00000359759 HSP90AA1P07900 732 aaKnown RBP22.04■■□□□ 1.12
COL18A1-203ENST00000359759 FKBP8Q14318 412 aa22.03■■□□□ 1.12
COL18A1-203ENST00000359759 NBR1Q14596 966 aa22.03■■□□□ 1.12
COL18A1-203ENST00000359759 ABCC9O60706 1549 aa22.02■■□□□ 1.12
COL18A1-203ENST00000359759 GLIPR1L2Q4G1C9 344 aa21.94■■□□□ 1.1
COL18A1-203ENST00000359759 ARID3CA6NKF2 412 aa21.92■■□□□ 1.1
COL18A1-203ENST00000359759 SALL2Q9Y467 1007 aaPredicted RBP21.87■■□□□ 1.09
COL18A1-203ENST00000359759 FBLN2P98095 1184 aa21.83■■□□□ 1.09
COL18A1-203ENST00000359759 UPF2Q9HAU5 1272 aaKnown RBP21.81■■□□□ 1.08
COL18A1-203ENST00000359759 P3H3Q8IVL6 736 aa21.8■■□□□ 1.08
COL18A1-203ENST00000359759 FAM9BQ8IZU0 186 aa21.79■■□□□ 1.08
COL18A1-203ENST00000359759 HNRNPUQ00839 825 aaKnown RBP eCLIP21.77■■□□□ 1.08
COL18A1-203ENST00000359759 ZNF777Q9ULD5 760 aaPredicted RBP21.73■■□□□ 1.07
COL18A1-203ENST00000359759 PLPPR3Q6T4P5 718 aa21.65■■□□□ 1.06
COL18A1-203ENST00000359759 IRX6P78412 446 aaPredicted RBP21.65■■□□□ 1.06
COL18A1-203ENST00000359759 CCDC136Q96JN2 1154 aa21.64■■□□□ 1.06
COL18A1-203ENST00000359759 DDX10Q13206 875 aaKnown RBP21.63■■□□□ 1.05
COL18A1-203ENST00000359759 CHGAP10645 457 aaKnown RBP21.61■■□□□ 1.05
COL18A1-203ENST00000359759 TONSLQ96HA7 1378 aa21.51■■□□□ 1.03
COL18A1-203ENST00000359759 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.5■■□□□ 1.03
COL18A1-203ENST00000359759 STAG3Q9UJ98 1225 aa21.48■■□□□ 1.03
COL18A1-203ENST00000359759 TMC1Q8TDI8 760 aa21.46■■□□□ 1.03
COL18A1-203ENST00000359759 CDK11BP21127 795 aaKnown RBP21.46■■□□□ 1.03
COL18A1-203ENST00000359759 TPRNQ4KMQ1 711 aa21.43■■□□□ 1.02
COL18A1-203ENST00000359759 WDR43Q15061 677 aaKnown RBP eCLIP21.41■■□□□ 1.023e-6■■□□□ 12.1
COL18A1-203ENST00000359759 SCAF1Q9H7N4 1312 aaKnown RBP21.41■■□□□ 1.02
COL18A1-203ENST00000359759 TRIM44Q96DX7 344 aaPredicted RBP21.4■■□□□ 1.02
COL18A1-203ENST00000359759 ESF1Q9H501 851 aaKnown RBP21.39■■□□□ 1.02
COL18A1-203ENST00000359759 NCLP19338 710 aaKnown RBP21.35■■□□□ 1.01
COL18A1-203ENST00000359759 HIRIP3Q9BW71 556 aaPredicted RBP21.35■■□□□ 1.01
COL18A1-203ENST00000359759 MRS2Q9HD23 443 aa21.35■■□□□ 1.01
COL18A1-203ENST00000359759 RTN4Q9NQC3 1192 aaKnown RBP21.34■■□□□ 1.01
COL18A1-203ENST00000359759 A0A0G2JS52 829 aa21.33■■□□□ 1.01
COL18A1-203ENST00000359759 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.33■■□□□ 17e-9■□□□□ 11.2
COL18A1-203ENST00000359759 SENP3-EIF4A1A0A087X0R7 540 aa21.33■■□□□ 1
COL18A1-203ENST00000359759 SENP3Q9H4L4 574 aaPredicted RBP21.33■■□□□ 1
COL18A1-203ENST00000359759 PLEKHG5O94827 1062 aa21.32■■□□□ 1
COL18A1-203ENST00000359759 MYH16Q9H6N6 1097 aa21.31■■□□□ 1
COL18A1-203ENST00000359759 KDM2AQ9Y2K7 1162 aa21.31■■□□□ 1
COL18A1-203ENST00000359759 CHIC2Q9UKJ5 165 aa21.3■■□□□ 1
COL18A1-203ENST00000359759 ZBTB7CA1YPR0 619 aa21.28■■□□□ 1
COL18A1-203ENST00000359759 TULP1O00294 542 aaPredicted RBP21.27■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms