RNA–Protein interactions for RNA: ENST00000469739.6

TOP3A-203, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 3,196 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-203ENST00000469739 NISCHQ9Y2I1 1504 aa19.94■□□□□ 0.78
TOP3A-203ENST00000469739 CCDC180Q9P1Z9 1646 aa17.26■□□□□ 0.35
TOP3A-203ENST00000469739 SHROOM4Q9ULL8 1493 aa17.14■□□□□ 0.33
TOP3A-203ENST00000469739 DCAF8L2P0C7V8 631 aa17.01■□□□□ 0.31
TOP3A-203ENST00000469739 ZCCHC6Q5VYS8 1495 aaKnown RBP16.83■□□□□ 0.28
TOP3A-203ENST00000469739 SUPT5HO00267 1087 aaKnown RBP16.74■□□□□ 0.27
TOP3A-203ENST00000469739 DCAF1Q9Y4B6 1507 aa16.44■□□□□ 0.22
TOP3A-203ENST00000469739 MYO15BQ96JP2 1530 aa16.11■□□□□ 0.17
TOP3A-203ENST00000469739 ABCC9O60706 1549 aa16.08■□□□□ 0.17
TOP3A-203ENST00000469739 SCRIBQ14160 1630 aa15.98■□□□□ 0.15
TOP3A-203ENST00000469739 NACADO15069 1562 aa15.96■□□□□ 0.15
TOP3A-203ENST00000469739 CHIC1Q5VXU3 224 aa15.91■□□□□ 0.14
TOP3A-203ENST00000469739 RB1CC1Q8TDY2 1594 aa15.78■□□□□ 0.12
TOP3A-203ENST00000469739 SLC24A1O60721 1099 aa15.7■□□□□ 0.1
TOP3A-203ENST00000469739 LOC105371045A0A1W2PR82 267 aa15.67■□□□□ 0.1
TOP3A-203ENST00000469739 EHMT2Q96KQ7 1210 aa15.66■□□□□ 0.1
TOP3A-203ENST00000469739 UNC13AQ9UPW8 1703 aa15.6■□□□□ 0.09
TOP3A-203ENST00000469739 RSF1Q96T23 1441 aaPredicted RBP15.59■□□□□ 0.09
TOP3A-203ENST00000469739 FAM9AQ8IZU1 332 aaPredicted RBP15.57■□□□□ 0.08
TOP3A-203ENST00000469739 CECR2Q9BXF3 1484 aa15.51■□□□□ 0.07
TOP3A-203ENST00000469739 MROH2BQ7Z745 1585 aa15.46■□□□□ 0.07
TOP3A-203ENST00000469739 PCGF6Q9BYE7 350 aa15.45■□□□□ 0.06
TOP3A-203ENST00000469739 TRIM41Q8WV44 630 aa15.44■□□□□ 0.06
TOP3A-203ENST00000469739 PABPN1Q86U42 306 aaKnown RBP eCLIP15.43■□□□□ 0.06
TOP3A-203ENST00000469739 WIZO95785 1651 aa15.38■□□□□ 0.05
TOP3A-203ENST00000469739 BAZ1AQ9NRL2 1556 aaPredicted RBP15.36■□□□□ 0.05
TOP3A-203ENST00000469739 BICRAQ9NZM4 1560 aa15.35■□□□□ 0.05
TOP3A-203ENST00000469739 SMARCA4P51532 1647 aa15.3■□□□□ 0.04
TOP3A-203ENST00000469739 TOP2AP11388 1531 aaKnown RBP15.18■□□□□ 0.02
TOP3A-203ENST00000469739 PPARGC1BQ86YN6 1023 aaKnown RBP15.17■□□□□ 0.02
TOP3A-203ENST00000469739 EIF4G1Q04637 1599 aaKnown RBP15.1■□□□□ 0.01
TOP3A-203ENST00000469739 SMARCA2P51531 1590 aa15.07■□□□□ 0
TOP3A-203ENST00000469739 HRCP23327 699 aa15.07■□□□□ 0
TOP3A-203ENST00000469739 PEG3Q9GZU2 1588 aa15.06■□□□□ 0
TOP3A-203ENST00000469739 TTBK1Q5TCY1 1321 aaPredicted RBP15.05■□□□□ -0
TOP3A-203ENST00000469739 CCDC88BA6NC98 1476 aa15.02■□□□□ -0
TOP3A-203ENST00000469739 TRIM26Q12899 539 aaPredicted RBP14.95□□□□□ -0.02
TOP3A-203ENST00000469739 PELP1Q8IZL8 1130 aaKnown RBP14.94□□□□□ -0.02
TOP3A-203ENST00000469739 ABCC8Q09428 1581 aa14.94□□□□□ -0.02
TOP3A-203ENST00000469739 ATAD2BQ9ULI0 1458 aa14.94□□□□□ -0.02
TOP3A-203ENST00000469739 BAZ1BQ9UIG0 1483 aaKnown RBP14.88□□□□□ -0.03
TOP3A-203ENST00000469739 PLPPR3Q6T4P5 718 aa14.87□□□□□ -0.03
TOP3A-203ENST00000469739 RANGAP1P46060 587 aaPredicted RBP14.87□□□□□ -0.03
TOP3A-203ENST00000469739 UBTFP17480 764 aaKnown RBP14.82□□□□□ -0.04
TOP3A-203ENST00000469739 SOGA1O94964 1423 aa14.79□□□□□ -0.04
TOP3A-203ENST00000469739 HMGXB3Q12766 1538 aa14.76□□□□□ -0.05
TOP3A-203ENST00000469739 RUSC2Q8N2Y8 1516 aa14.75□□□□□ -0.05
TOP3A-203ENST00000469739 NCAPD3P42695 1498 aa14.72□□□□□ -0.05
TOP3A-203ENST00000469739 CSRNP3Q8WYN3 585 aa14.69□□□□□ -0.06
TOP3A-203ENST00000469739 WRNQ14191 1432 aaPredicted RBP eCLIP14.65□□□□□ -0.06
TOP3A-203ENST00000469739 SYNJ1O43426 1573 aa14.65□□□□□ -0.06
TOP3A-203ENST00000469739 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.65□□□□□ -0.06
TOP3A-203ENST00000469739 CC2D2AQ9P2K1 1620 aa14.57□□□□□ -0.08
TOP3A-203ENST00000469739 CEP162Q5TB80 1403 aa14.56□□□□□ -0.08
TOP3A-203ENST00000469739 EEA1Q15075 1411 aa14.55□□□□□ -0.08
TOP3A-203ENST00000469739 PRDM2Q13029 1718 aa14.54□□□□□ -0.08
TOP3A-203ENST00000469739 CCER1Q8TC90 406 aaPredicted RBP14.53□□□□□ -0.08
TOP3A-203ENST00000469739 TOP2BQ02880 1626 aa14.53□□□□□ -0.08
TOP3A-203ENST00000469739 BIVM-ERCC5R4GMW8 1640 aa14.53□□□□□ -0.08
TOP3A-203ENST00000469739 CFTRP13569 1480 aa14.5□□□□□ -0.09
TOP3A-203ENST00000469739 MYT1Q01538 1121 aa14.46□□□□□ -0.09
TOP3A-203ENST00000469739 RTN4Q9NQC3 1192 aaKnown RBP14.45□□□□□ -0.1
TOP3A-203ENST00000469739 HNRNPUL2Q1KMD3 747 aaKnown RBP14.44□□□□□ -0.1
TOP3A-203ENST00000469739 TNIKQ9UKE5 1360 aa14.44□□□□□ -0.1
TOP3A-203ENST00000469739 CUX1P39880 1505 aa14.43□□□□□ -0.1
TOP3A-203ENST00000469739 KIF21BO75037 1637 aa14.43□□□□□ -0.1
TOP3A-203ENST00000469739 GOLGA3Q08378 1498 aa14.42□□□□□ -0.1
TOP3A-203ENST00000469739 ZEB1P37275 1124 aaPredicted RBP14.4□□□□□ -0.1
TOP3A-203ENST00000469739 RAPGEF2Q9Y4G8 1499 aa14.38□□□□□ -0.11
TOP3A-203ENST00000469739 CEP164Q9UPV0 1460 aa14.38□□□□□ -0.11
TOP3A-203ENST00000469739 APLP2Q06481 763 aa14.38□□□□□ -0.11
TOP3A-203ENST00000469739 CADPSQ9ULU8 1353 aa14.37□□□□□ -0.11
TOP3A-203ENST00000469739 SCAF1Q9H7N4 1312 aaKnown RBP14.35□□□□□ -0.11
TOP3A-203ENST00000469739 CLIP1P30622 1438 aa14.35□□□□□ -0.11
TOP3A-203ENST00000469739 DNAJC5BQ9UF47 199 aa14.29□□□□□ -0.12
TOP3A-203ENST00000469739 ATP1B4Q9UN42 357 aaPredicted RBP14.26□□□□□ -0.13
TOP3A-203ENST00000469739 FANCD2Q9BXW9 1451 aa14.25□□□□□ -0.13
TOP3A-203ENST00000469739 P3H3Q8IVL6 736 aa14.25□□□□□ -0.13
TOP3A-203ENST00000469739 ERICH3Q5RHP9 1530 aa14.25□□□□□ -0.13
TOP3A-203ENST00000469739 ITGAEP38570 1179 aa14.24□□□□□ -0.13
TOP3A-203ENST00000469739 PRXQ9BXM0 1461 aa14.24□□□□□ -0.13
TOP3A-203ENST00000469739 NESP48681 1621 aa14.24□□□□□ -0.13
TOP3A-203ENST00000469739 KIF27Q86VH2 1401 aa14.23□□□□□ -0.13
TOP3A-203ENST00000469739 FGD5Q6ZNL6 1462 aa14.21□□□□□ -0.13
TOP3A-203ENST00000469739 PRKCSHP14314 528 aaPredicted RBP14.21□□□□□ -0.14
TOP3A-203ENST00000469739 LAMC3Q9Y6N6 1575 aa14.2□□□□□ -0.14
TOP3A-203ENST00000469739 KANK4Q5T7N3 995 aaPredicted RBP14.2□□□□□ -0.14
TOP3A-203ENST00000469739 DNMBPQ6XZF7 1577 aa14.19□□□□□ -0.14
TOP3A-203ENST00000469739 CUX2O14529 1486 aa14.17□□□□□ -0.14
TOP3A-203ENST00000469739 VPS8Q8N3P4 1428 aa14.16□□□□□ -0.14
TOP3A-203ENST00000469739 TOPBP1Q92547 1522 aa14.14□□□□□ -0.15
TOP3A-203ENST00000469739 KIF21AQ7Z4S6 1674 aa14.1□□□□□ -0.15
TOP3A-203ENST00000469739 POLA1P09884 1462 aaPredicted RBP14.1□□□□□ -0.15
TOP3A-203ENST00000469739 URB2Q14146 1524 aaKnown RBP14.08□□□□□ -0.15
TOP3A-203ENST00000469739 IGF1RP08069 1367 aa14.08□□□□□ -0.16
TOP3A-203ENST00000469739 ARAP1Q96P48 1450 aa14.07□□□□□ -0.16
TOP3A-203ENST00000469739 RAD54L2Q9Y4B4 1467 aa14.07□□□□□ -0.16
TOP3A-203ENST00000469739 WDR97A6NE52 1622 aa14.07□□□□□ -0.16
TOP3A-203ENST00000469739 ABCA10Q8WWZ4 1543 aa14.07□□□□□ -0.16
TOP3A-203ENST00000469739 DIEXFQ68CQ4 756 aaKnown RBP14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 201.8 ms