RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 DCAF8L2P0C7V8 631 aa31.94■■■□□ 2.7
COL18A1-204ENST00000400337 NISCHQ9Y2I1 1504 aa30.81■■■□□ 2.52
COL18A1-204ENST00000400337 SUPT5HO00267 1087 aaKnown RBP30.39■■■□□ 2.46
COL18A1-204ENST00000400337 SHROOM4Q9ULL8 1493 aa29.95■■■□□ 2.38
COL18A1-204ENST00000400337 EHMT2Q96KQ7 1210 aa29.35■■■□□ 2.29
COL18A1-204ENST00000400337 FAM9AQ8IZU1 332 aaPredicted RBP28.65■■■□□ 2.18
COL18A1-204ENST00000400337 APLP2Q06481 763 aa28.62■■■□□ 2.17
COL18A1-204ENST00000400337 TTBK1Q5TCY1 1321 aaPredicted RBP28.34■■■□□ 2.13
COL18A1-204ENST00000400337 PCGF6Q9BYE7 350 aa28.28■■■□□ 2.12
COL18A1-204ENST00000400337 PELP1Q8IZL8 1130 aaKnown RBP28.15■■■□□ 2.1
COL18A1-204ENST00000400337 TRIM41Q8WV44 630 aa28.12■■■□□ 2.09
COL18A1-204ENST00000400337 RANGAP1P46060 587 aaPredicted RBP28.08■■■□□ 2.09
COL18A1-204ENST00000400337 UBTFP17480 764 aaKnown RBP27.74■■■□□ 2.03
COL18A1-204ENST00000400337 ATP1B4Q9UN42 357 aaPredicted RBP27.74■■■□□ 2.03
COL18A1-204ENST00000400337 CCER1Q8TC90 406 aaPredicted RBP27.71■■■□□ 2.03
COL18A1-204ENST00000400337 ZEB1P37275 1124 aaPredicted RBP27.64■■■□□ 2.01
COL18A1-204ENST00000400337 CENPBP07199 599 aaPredicted RBP27.43■■□□□ 1.98
COL18A1-204ENST00000400337 PPARGC1BQ86YN6 1023 aaKnown RBP27.37■■□□□ 1.97
COL18A1-204ENST00000400337 TRIM26Q12899 539 aaPredicted RBP27.08■■□□□ 1.93
COL18A1-204ENST00000400337 YTHDC1Q96MU7 727 aaKnown RBP27.04■■□□□ 1.92
COL18A1-204ENST00000400337 LOC105371045A0A1W2PR82 267 aa27.03■■□□□ 1.92
COL18A1-204ENST00000400337 CHIC1Q5VXU3 224 aa27.02■■□□□ 1.92
COL18A1-204ENST00000400337 ERICH6Q7L0X2 663 aa27■■□□□ 1.91
COL18A1-204ENST00000400337 ITGAEP38570 1179 aa26.87■■□□□ 1.89
COL18A1-204ENST00000400337 NEFLP07196 543 aa26.85■■□□□ 1.89
COL18A1-204ENST00000400337 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.77■■□□□ 1.88
COL18A1-204ENST00000400337 HNRNPUL2Q1KMD3 747 aaKnown RBP26.77■■□□□ 1.88
COL18A1-204ENST00000400337 HRCP23327 699 aa26.74■■□□□ 1.87
COL18A1-204ENST00000400337 MYT1LQ9UL68 1186 aa26.58■■□□□ 1.85
COL18A1-204ENST00000400337 ABCC9O60706 1549 aa26.56■■□□□ 1.84
COL18A1-204ENST00000400337 PABPN1Q86U42 306 aaKnown RBP eCLIP26.52■■□□□ 1.844e-11■■■□□ 17.3
COL18A1-204ENST00000400337 POLR3GLQ9BT43 218 aa26.51■■□□□ 1.83
COL18A1-204ENST00000400337 CNGB1Q14028 1251 aaPredicted RBP26.3■■□□□ 1.8
COL18A1-204ENST00000400337 FAM50AQ14320 339 aaKnown RBP26.19■■□□□ 1.78
COL18A1-204ENST00000400337 MYT1Q01538 1121 aa26.15■■□□□ 1.78
COL18A1-204ENST00000400337 DIEXFQ68CQ4 756 aaKnown RBP26.08■■□□□ 1.76
COL18A1-204ENST00000400337 TRIM52Q96A61 297 aa26■■□□□ 1.75
COL18A1-204ENST00000400337 SLC4A1APQ9BWU0 796 aaKnown RBP25.95■■□□□ 1.75
COL18A1-204ENST00000400337 DAXXQ9UER7 740 aaPredicted RBP25.95■■□□□ 1.75
COL18A1-204ENST00000400337 NEUROD1Q13562 356 aa25.94■■□□□ 1.74
COL18A1-204ENST00000400337 FBLN2P98095 1184 aa25.81■■□□□ 1.72
COL18A1-204ENST00000400337 CSRNP3Q8WYN3 585 aa25.74■■□□□ 1.71
COL18A1-204ENST00000400337 P3H3Q8IVL6 736 aa25.7■■□□□ 1.71
COL18A1-204ENST00000400337 ZNF326Q5BKZ1 582 aaKnown RBP25.7■■□□□ 1.7
COL18A1-204ENST00000400337 ARID3CA6NKF2 412 aa25.61■■□□□ 1.69
COL18A1-204ENST00000400337 CLSPNQ9HAW4 1339 aa25.56■■□□□ 1.68
COL18A1-204ENST00000400337 ANP32CO43423 234 aa25.56■■□□□ 1.68
COL18A1-204ENST00000400337 SCRIBQ14160 1630 aa25.54■■□□□ 1.68
COL18A1-204ENST00000400337 ZNF316A6NFI3 1004 aaPredicted RBP25.52■■□□□ 1.68
COL18A1-204ENST00000400337 ZCCHC6Q5VYS8 1495 aaKnown RBP25.49■■□□□ 1.67
COL18A1-204ENST00000400337 BCANQ96GW7 911 aa25.48■■□□□ 1.67
COL18A1-204ENST00000400337 GTF3C3Q9Y5Q9 886 aa25.45■■□□□ 1.66
COL18A1-204ENST00000400337 ZNF777Q9ULD5 760 aaPredicted RBP25.38■■□□□ 1.65
COL18A1-204ENST00000400337 RTL5Q5HYW3 569 aaPredicted RBP25.34■■□□□ 1.65
COL18A1-204ENST00000400337 CDK11AQ9UQ88 783 aaPredicted RBP25.27■■□□□ 1.64
COL18A1-204ENST00000400337 ACIN1Q9UKV3 1341 aaKnown RBP25.09■■□□□ 1.61
COL18A1-204ENST00000400337 DCAF1Q9Y4B6 1507 aa25.09■■□□□ 1.61
COL18A1-204ENST00000400337 CANXP27824 592 aaKnown RBP25.07■■□□□ 1.6
COL18A1-204ENST00000400337 TONSLQ96HA7 1378 aa25.06■■□□□ 1.6
COL18A1-204ENST00000400337 ZBTB47Q9UFB7 747 aaPredicted RBP25.05■■□□□ 1.6
COL18A1-204ENST00000400337 CCDC180Q9P1Z9 1646 aa25.03■■□□□ 1.6
COL18A1-204ENST00000400337 SLC24A1O60721 1099 aa25.02■■□□□ 1.6
COL18A1-204ENST00000400337 NEFMP07197 916 aa25■■□□□ 1.59
COL18A1-204ENST00000400337 BCL11AQ9H165 835 aa24.99■■□□□ 1.59
COL18A1-204ENST00000400337 CHIC2Q9UKJ5 165 aa24.97■■□□□ 1.59
COL18A1-204ENST00000400337 CHGAP10645 457 aaKnown RBP24.92■■□□□ 1.58
COL18A1-204ENST00000400337 DDX10Q13206 875 aaKnown RBP24.92■■□□□ 1.58
COL18A1-204ENST00000400337 ESF1Q9H501 851 aaKnown RBP24.85■■□□□ 1.57
COL18A1-204ENST00000400337 NPM1P06748 294 aaKnown RBP eCLIP24.83■■□□□ 1.57
COL18A1-204ENST00000400337 CLIP1P30622 1438 aa24.82■■□□□ 1.56
COL18A1-204ENST00000400337 HNRNPUQ00839 825 aaKnown RBP eCLIP24.81■■□□□ 1.56
COL18A1-204ENST00000400337 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.81■■□□□ 1.567e-9■□□□□ 11.2
COL18A1-204ENST00000400337 MTUS2Q5JR59 1369 aa24.8■■□□□ 1.56
COL18A1-204ENST00000400337 STAG3Q9UJ98 1225 aa24.8■■□□□ 1.56
COL18A1-204ENST00000400337 RSF1Q96T23 1441 aaPredicted RBP24.8■■□□□ 1.56
COL18A1-204ENST00000400337 FAM9BQ8IZU0 186 aa24.79■■□□□ 1.56
COL18A1-204ENST00000400337 FKBP8Q14318 412 aa24.79■■□□□ 1.56
COL18A1-204ENST00000400337 CHMP7Q8WUX9 453 aaPredicted RBP24.75■■□□□ 1.55
COL18A1-204ENST00000400337 RB1CC1Q8TDY2 1594 aa24.74■■□□□ 1.55
COL18A1-204ENST00000400337 TSPY4P0CV99 314 aa24.74■■□□□ 1.55
COL18A1-204ENST00000400337 TSPY10P0CW01 314 aa24.74■■□□□ 1.55
COL18A1-204ENST00000400337 ANP32AP39687 249 aaKnown RBP24.71■■□□□ 1.55
COL18A1-204ENST00000400337 SALL2Q9Y467 1007 aaPredicted RBP24.69■■□□□ 1.54
COL18A1-204ENST00000400337 PLPPR3Q6T4P5 718 aa24.69■■□□□ 1.54
COL18A1-204ENST00000400337 MYO15BQ96JP2 1530 aa24.69■■□□□ 1.54
COL18A1-204ENST00000400337 NPM2Q86SE8 214 aaKnown RBP24.69■■□□□ 1.54
COL18A1-204ENST00000400337 KDM2AQ9Y2K7 1162 aa24.67■■□□□ 1.54
COL18A1-204ENST00000400337 TMC1Q8TDI8 760 aa24.63■■□□□ 1.53
COL18A1-204ENST00000400337 HIRIP3Q9BW71 556 aaPredicted RBP24.62■■□□□ 1.53
COL18A1-204ENST00000400337 CEP162Q5TB80 1403 aa24.61■■□□□ 1.53
COL18A1-204ENST00000400337 RRP7BPQ9NSQ0 103 aa24.61■■□□□ 1.53
COL18A1-204ENST00000400337 GOLGA3Q08378 1498 aa24.6■■□□□ 1.53
COL18A1-204ENST00000400337 EEA1Q15075 1411 aa24.59■■□□□ 1.53
COL18A1-204ENST00000400337 WRNQ14191 1432 aaPredicted RBP eCLIP24.58■■□□□ 1.52
COL18A1-204ENST00000400337 MRS2Q9HD23 443 aa24.55■■□□□ 1.52
COL18A1-204ENST00000400337 MIER1Q8N108 512 aa24.54■■□□□ 1.52
COL18A1-204ENST00000400337 BAZ1BQ9UIG0 1483 aaKnown RBP24.51■■□□□ 1.51
COL18A1-204ENST00000400337 NACADO15069 1562 aa24.5■■□□□ 1.51
COL18A1-204ENST00000400337 KCNH8Q96L42 1107 aa24.47■■□□□ 1.51
COL18A1-204ENST00000400337 EIF4G2P78344 907 aaKnown RBP eCLIP24.46■■□□□ 1.512e-6■■■■□ 22.8
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms