RNA–Protein interactions for RNA: ENST00000396410.8

PDXDC1-202, Transcript of pyridoxal dependent decarboxylase domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDXDC1, Length 4,521 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDXDC1-202ENST00000396410 NISCHQ9Y2I1 1504 aa23.77■■□□□ 1.4
PDXDC1-202ENST00000396410 SHROOM4Q9ULL8 1493 aa20.51■□□□□ 0.87
PDXDC1-202ENST00000396410 DCAF8L2P0C7V8 631 aa20.47■□□□□ 0.87
PDXDC1-202ENST00000396410 CCDC180Q9P1Z9 1646 aa20.19■□□□□ 0.82
PDXDC1-202ENST00000396410 SUPT5HO00267 1087 aaKnown RBP20.15■□□□□ 0.82
PDXDC1-202ENST00000396410 ZCCHC6Q5VYS8 1495 aaKnown RBP20.01■□□□□ 0.79
PDXDC1-202ENST00000396410 DCAF1Q9Y4B6 1507 aa19.39■□□□□ 0.69
PDXDC1-202ENST00000396410 CHIC1Q5VXU3 224 aa19.22■□□□□ 0.67
PDXDC1-202ENST00000396410 ABCC9O60706 1549 aa19.21■□□□□ 0.67
PDXDC1-202ENST00000396410 SCRIBQ14160 1630 aa19.1■□□□□ 0.65
PDXDC1-202ENST00000396410 MYO15BQ96JP2 1530 aa18.89■□□□□ 0.61
PDXDC1-202ENST00000396410 NACADO15069 1562 aa18.86■□□□□ 0.61
PDXDC1-202ENST00000396410 TRIM41Q8WV44 630 aa18.78■□□□□ 0.6
PDXDC1-202ENST00000396410 RSF1Q96T23 1441 aaPredicted RBP18.77■□□□□ 0.6
PDXDC1-202ENST00000396410 LOC105371045A0A1W2PR82 267 aa18.72■□□□□ 0.59
PDXDC1-202ENST00000396410 FAM9AQ8IZU1 332 aaPredicted RBP18.68■□□□□ 0.58
PDXDC1-202ENST00000396410 RB1CC1Q8TDY2 1594 aa18.67■□□□□ 0.58
PDXDC1-202ENST00000396410 PCGF6Q9BYE7 350 aa18.66■□□□□ 0.58
PDXDC1-202ENST00000396410 EHMT2Q96KQ7 1210 aa18.63■□□□□ 0.57
PDXDC1-202ENST00000396410 CECR2Q9BXF3 1484 aa18.57■□□□□ 0.56
PDXDC1-202ENST00000396410 MROH2BQ7Z745 1585 aa18.46■□□□□ 0.55
PDXDC1-202ENST00000396410 PABPN1Q86U42 306 aaKnown RBP eCLIP18.45■□□□□ 0.548e-6■□□□□ 8.9
PDXDC1-202ENST00000396410 HRCP23327 699 aa18.35■□□□□ 0.53
PDXDC1-202ENST00000396410 BAZ1AQ9NRL2 1556 aaPredicted RBP18.35■□□□□ 0.53
PDXDC1-202ENST00000396410 WIZO95785 1651 aa18.33■□□□□ 0.53
PDXDC1-202ENST00000396410 TRIM26Q12899 539 aaPredicted RBP18.29■□□□□ 0.52
PDXDC1-202ENST00000396410 SMARCA4P51532 1647 aa18.12■□□□□ 0.49
PDXDC1-202ENST00000396410 TOP2AP11388 1531 aaKnown RBP18.09■□□□□ 0.49
PDXDC1-202ENST00000396410 PPARGC1BQ86YN6 1023 aaKnown RBP18.06■□□□□ 0.48
PDXDC1-202ENST00000396410 CCDC88BA6NC98 1476 aa18.05■□□□□ 0.48
PDXDC1-202ENST00000396410 UBTFP17480 764 aaKnown RBP18.02■□□□□ 0.48
PDXDC1-202ENST00000396410 UNC13AQ9UPW8 1703 aa18.01■□□□□ 0.47
PDXDC1-202ENST00000396410 TTBK1Q5TCY1 1321 aaPredicted RBP17.97■□□□□ 0.47
PDXDC1-202ENST00000396410 ABCC8Q09428 1581 aa17.94■□□□□ 0.46
PDXDC1-202ENST00000396410 ZEB1P37275 1124 aaPredicted RBP17.93■□□□□ 0.46
PDXDC1-202ENST00000396410 SMARCA2P51531 1590 aa17.92■□□□□ 0.46
PDXDC1-202ENST00000396410 BICRAQ9NZM4 1560 aa17.88■□□□□ 0.45
PDXDC1-202ENST00000396410 CSRNP3Q8WYN3 585 aa17.87■□□□□ 0.45
PDXDC1-202ENST00000396410 BAZ1BQ9UIG0 1483 aaKnown RBP17.86■□□□□ 0.45
PDXDC1-202ENST00000396410 RANGAP1P46060 587 aaPredicted RBP17.8■□□□□ 0.44
PDXDC1-202ENST00000396410 WRNQ14191 1432 aaPredicted RBP eCLIP17.8■□□□□ 0.44
PDXDC1-202ENST00000396410 SOGA1O94964 1423 aa17.78■□□□□ 0.44
PDXDC1-202ENST00000396410 ATAD2BQ9ULI0 1458 aa17.77■□□□□ 0.44
PDXDC1-202ENST00000396410 APLP2Q06481 763 aa17.75■□□□□ 0.43
PDXDC1-202ENST00000396410 EEA1Q15075 1411 aa17.75■□□□□ 0.43
PDXDC1-202ENST00000396410 CCER1Q8TC90 406 aaPredicted RBP17.74■□□□□ 0.43
PDXDC1-202ENST00000396410 EIF4G1Q04637 1599 aaKnown RBP17.73■□□□□ 0.43
PDXDC1-202ENST00000396410 CEP162Q5TB80 1403 aa17.69■□□□□ 0.42
PDXDC1-202ENST00000396410 TNIKQ9UKE5 1360 aa17.65■□□□□ 0.42
PDXDC1-202ENST00000396410 PEG3Q9GZU2 1588 aa17.63■□□□□ 0.41
PDXDC1-202ENST00000396410 GOLGA3Q08378 1498 aa17.63■□□□□ 0.41
PDXDC1-202ENST00000396410 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.63■□□□□ 0.41
PDXDC1-202ENST00000396410 RUSC2Q8N2Y8 1516 aa17.62■□□□□ 0.41
PDXDC1-202ENST00000396410 CEP164Q9UPV0 1460 aa17.54■□□□□ 0.4
PDXDC1-202ENST00000396410 SYNJ1O43426 1573 aa17.49■□□□□ 0.39
PDXDC1-202ENST00000396410 CLIP1P30622 1438 aa17.47■□□□□ 0.39
PDXDC1-202ENST00000396410 HNRNPUL2Q1KMD3 747 aaKnown RBP17.45■□□□□ 0.38
PDXDC1-202ENST00000396410 NCAPD3P42695 1498 aa17.44■□□□□ 0.38
PDXDC1-202ENST00000396410 HMGXB3Q12766 1538 aa17.37■□□□□ 0.37
PDXDC1-202ENST00000396410 RAPGEF2Q9Y4G8 1499 aa17.35■□□□□ 0.37
PDXDC1-202ENST00000396410 KIF27Q86VH2 1401 aa17.33■□□□□ 0.37
PDXDC1-202ENST00000396410 KIF21BO75037 1637 aa17.31■□□□□ 0.36
PDXDC1-202ENST00000396410 TOP2BQ02880 1626 aa17.31■□□□□ 0.36
PDXDC1-202ENST00000396410 VPS8Q8N3P4 1428 aa17.28■□□□□ 0.36
PDXDC1-202ENST00000396410 ATP1B4Q9UN42 357 aaPredicted RBP17.27■□□□□ 0.36
PDXDC1-202ENST00000396410 CFTRP13569 1480 aa17.24■□□□□ 0.35
PDXDC1-202ENST00000396410 CADPSQ9ULU8 1353 aa17.23■□□□□ 0.35
PDXDC1-202ENST00000396410 CUX1P39880 1505 aa17.2■□□□□ 0.34
PDXDC1-202ENST00000396410 CUX2O14529 1486 aa17.19■□□□□ 0.34
PDXDC1-202ENST00000396410 BIVM-ERCC5R4GMW8 1640 aa17.17■□□□□ 0.34
PDXDC1-202ENST00000396410 ITGAEP38570 1179 aa17.17■□□□□ 0.34
PDXDC1-202ENST00000396410 DIEXFQ68CQ4 756 aaKnown RBP17.15■□□□□ 0.34
PDXDC1-202ENST00000396410 ERICH3Q5RHP9 1530 aa17.11■□□□□ 0.33
PDXDC1-202ENST00000396410 CC2D2AQ9P2K1 1620 aa17.11■□□□□ 0.33
PDXDC1-202ENST00000396410 PRXQ9BXM0 1461 aa17.11■□□□□ 0.33
PDXDC1-202ENST00000396410 P3H3Q8IVL6 736 aa17.11■□□□□ 0.33
PDXDC1-202ENST00000396410 CARMIL1Q5VZK9 1371 aa17.08■□□□□ 0.33
PDXDC1-202ENST00000396410 FANCD2Q9BXW9 1451 aa17.05■□□□□ 0.32
PDXDC1-202ENST00000396410 FGD5Q6ZNL6 1462 aa17.04■□□□□ 0.32
PDXDC1-202ENST00000396410 ZNF316A6NFI3 1004 aaPredicted RBP17.04■□□□□ 0.32
PDXDC1-202ENST00000396410 KANK4Q5T7N3 995 aaPredicted RBP17.04■□□□□ 0.32
PDXDC1-202ENST00000396410 IGF1RP08069 1367 aa17.02■□□□□ 0.32
PDXDC1-202ENST00000396410 CENPBP07199 599 aaPredicted RBP17■□□□□ 0.31
PDXDC1-202ENST00000396410 FAM50AQ14320 339 aaKnown RBP16.98■□□□□ 0.31
PDXDC1-202ENST00000396410 ARAP1Q96P48 1450 aa16.98■□□□□ 0.31
PDXDC1-202ENST00000396410 NESP48681 1621 aa16.92■□□□□ 0.3
PDXDC1-202ENST00000396410 RAD54L2Q9Y4B4 1467 aa16.91■□□□□ 0.3
PDXDC1-202ENST00000396410 ARHGAP35Q9NRY4 1499 aa16.91■□□□□ 0.3
PDXDC1-202ENST00000396410 YTHDC1Q96MU7 727 aaKnown RBP16.9■□□□□ 0.3
PDXDC1-202ENST00000396410 PRDM2Q13029 1718 aa16.89■□□□□ 0.29
PDXDC1-202ENST00000396410 CCNB3Q8WWL7 1395 aa16.88■□□□□ 0.29
PDXDC1-202ENST00000396410 FHAD1B1AJZ9 1412 aa16.87■□□□□ 0.29
PDXDC1-202ENST00000396410 PDS5BQ9NTI5 1447 aa16.86■□□□□ 0.29
PDXDC1-202ENST00000396410 TOPBP1Q92547 1522 aa16.84■□□□□ 0.29
PDXDC1-202ENST00000396410 DNMBPQ6XZF7 1577 aa16.84■□□□□ 0.29
PDXDC1-202ENST00000396410 TDRD9Q8NDG6 1382 aaKnown RBP16.84■□□□□ 0.29
PDXDC1-202ENST00000396410 POLA1P09884 1462 aaPredicted RBP16.82■□□□□ 0.28
PDXDC1-202ENST00000396410 CLSPNQ9HAW4 1339 aa16.79■□□□□ 0.28
PDXDC1-202ENST00000396410 FHOD3Q2V2M9 1422 aa16.79■□□□□ 0.28
PDXDC1-202ENST00000396410 ACIN1Q9UKV3 1341 aaKnown RBP16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms